Wall clock time and date at job start Wed Apr 1 2020 00:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39650 * 120.14826 * 116.44771 * 3 2 1 5 5 C 1.37929 * 119.84334 * 179.97438 * 4 3 2 6 6 C 1.38385 * 120.15425 * 0.02562 * 5 4 3 7 7 C 1.38341 * 120.29954 * 359.70623 * 6 5 4 8 8 C 1.50707 * 119.92289 * 180.27827 * 7 6 5 9 9 N 1.46905 * 109.46893 * 270.27533 * 8 7 6 10 10 C 1.46854 * 111.00054 * 45.78956 * 9 8 7 11 11 C 1.53029 * 109.52110 * 185.84131 * 10 9 8 12 12 C 1.53123 * 109.27798 * 300.81611 * 11 10 9 13 13 N 1.46504 * 109.57409 * 177.59180 * 12 11 10 14 14 C 1.34782 * 119.99529 * 85.28862 * 13 12 11 15 15 O 1.21281 * 120.00109 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99607 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47231 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47560 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99294 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00066 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00221 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99773 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47182 * 59.99624 * 22 20 18 24 24 H 1.48500 * 109.46980 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47098 * 299.99550 * 22 20 18 26 26 C 1.53116 * 109.15980 * 57.65912 * 12 11 10 27 27 C 1.46845 * 110.99921 * 169.99861 * 9 8 7 28 28 C 1.37965 * 120.15708 * 0.55481 * 7 6 5 29 29 H 1.07996 * 120.07902 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.92132 * 179.97438 * 5 4 3 31 31 H 1.07989 * 119.85002 * 180.02562 * 6 5 4 32 32 H 1.09006 * 109.46877 * 30.27144 * 8 7 6 33 33 H 1.08995 * 109.47320 * 150.27676 * 8 7 6 34 34 H 1.08999 * 109.45783 * 305.85316 * 10 9 8 35 35 H 1.08999 * 109.46182 * 65.81756 * 10 9 8 36 36 H 1.09003 * 109.50003 * 180.88213 * 11 10 9 37 37 H 1.08992 * 109.54028 * 60.77971 * 11 10 9 38 38 H 1.08998 * 109.52697 * 297.75373 * 12 11 10 39 39 H 0.96998 * 120.00094 * 265.28430 * 13 12 11 40 40 H 1.08996 * 109.47646 * 300.00399 * 16 14 13 41 41 H 1.09002 * 109.47132 * 60.00233 * 16 14 13 42 42 H 1.09003 * 109.46919 * 300.00552 * 17 16 14 43 43 H 1.09002 * 109.46774 * 60.00134 * 17 16 14 44 44 H 0.96998 * 120.00467 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.50816 * 182.40502 * 26 12 11 46 46 H 1.09001 * 109.53873 * 62.30651 * 26 12 11 47 47 H 1.09002 * 109.46309 * 294.17484 * 27 9 8 48 48 H 1.08996 * 109.46216 * 54.15140 * 27 9 8 49 49 H 1.08002 * 120.08297 * 179.75061 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.5388 -1.0812 5 6 4.6484 0.5366 -1.0744 6 6 5.3374 0.0024 0.0003 7 6 4.6491 -0.5273 1.0770 8 6 5.4080 -1.1013 2.2457 9 7 5.6611 -2.5293 2.0114 10 6 6.1484 -2.7603 0.6454 11 6 6.2618 -4.2649 0.3906 12 6 7.2281 -4.8785 1.4077 13 7 7.2976 -6.3279 1.2062 14 6 8.1464 -6.8415 0.2939 15 8 8.8529 -6.1038 -0.3599 16 6 8.2182 -8.3325 0.0871 17 6 9.2513 -8.6479 -0.9965 18 6 9.3227 -10.1389 -1.2039 19 1 8.6944 -10.7958 -0.6207 20 6 10.1909 -10.6643 -2.1372 21 7 10.9563 -9.8643 -2.8470 22 14 10.2800 -12.5125 -2.3937 23 1 8.9493 -13.0183 -2.8166 24 1 11.2826 -12.8186 -3.4455 25 1 10.6784 -13.1699 -1.1231 26 6 6.7233 -4.5822 2.8225 27 6 6.5964 -3.0683 3.0070 28 6 3.2695 -0.5366 1.0810 29 1 2.7327 0.9557 -1.9207 30 1 5.1919 0.9521 -1.9101 31 1 6.4173 0.0036 0.0006 32 1 6.3575 -0.5772 2.3550 33 1 4.8197 -0.9811 3.1553 34 1 5.4501 -2.3227 -0.0680 35 1 7.1276 -2.2967 0.5259 36 1 6.6384 -4.4357 -0.6180 37 1 5.2806 -4.7275 0.4959 38 1 8.2193 -4.4445 1.2763 39 1 6.7328 -6.9179 1.7295 40 1 8.5105 -8.8151 1.0196 41 1 7.2416 -8.7037 -0.2236 42 1 8.9585 -8.1653 -1.9291 43 1 10.2280 -8.2766 -0.6864 44 1 11.5668 -10.2339 -3.5039 45 1 7.4295 -4.9796 3.5516 46 1 5.7492 -5.0494 2.9674 47 1 7.5736 -2.6033 2.8764 48 1 6.2235 -2.8545 4.0086 49 1 2.7333 -0.9541 1.9205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593348288.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:41:09 Heat of formation + Delta-G solvation = -16.167901 kcal Electronic energy + Delta-G solvation = -28171.380250 eV Core-core repulsion = 24289.599907 eV Total energy + Delta-G solvation = -3881.780343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21462 -40.62707 -39.31076 -37.58291 -36.21453 -35.51573 -33.74123 -32.90198 -32.30909 -31.80621 -31.17903 -27.98675 -26.77966 -24.91464 -24.38851 -24.18704 -23.09946 -22.24736 -21.28024 -20.60758 -19.26861 -18.77605 -17.62354 -17.35572 -17.19823 -16.69061 -16.51144 -16.41709 -16.28700 -15.97861 -15.27078 -15.09770 -15.07771 -14.87342 -14.66994 -14.44946 -14.14849 -14.11884 -14.03881 -13.92751 -13.66824 -13.26208 -13.21066 -13.05713 -12.88221 -12.76940 -12.52342 -12.45619 -12.15159 -12.12503 -12.03344 -11.89272 -11.68419 -11.60159 -11.47050 -11.30794 -10.63378 -10.55179 -10.01041 -9.89446 -9.78710 -9.18943 -8.16945 -6.31016 -0.19245 0.37274 1.42606 1.47099 1.54769 1.59042 1.76456 1.90844 2.29390 2.46418 2.77637 2.85651 3.15743 3.16573 3.67963 3.78308 3.93174 3.96570 4.08552 4.13722 4.16307 4.25289 4.29899 4.36892 4.45169 4.51817 4.56673 4.58146 4.63950 4.68256 4.72848 4.77746 4.91253 4.95606 5.00945 5.06696 5.08202 5.13740 5.21212 5.32967 5.35037 5.40579 5.49823 5.55170 5.63995 5.65085 5.86833 5.87078 6.10286 6.15640 6.19075 6.42218 6.68720 6.87428 7.38702 7.42106 8.95417 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016285 B = 0.001803 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.950196 B =15526.672201 C =16126.768453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.279 3.721 3 C -0.047 4.047 4 C -0.068 4.068 5 C -0.120 4.120 6 C -0.083 4.083 7 C -0.090 4.090 8 C 0.093 3.907 9 N -0.536 5.536 10 C 0.063 3.937 11 C -0.122 4.122 12 C 0.141 3.859 13 N -0.715 5.715 14 C 0.512 3.488 15 O -0.589 6.589 16 C -0.121 4.121 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.007 4.007 21 N -0.937 5.937 22 Si 0.974 3.026 23 H -0.263 1.263 24 H -0.288 1.288 25 H -0.262 1.262 26 C -0.113 4.113 27 C 0.061 3.939 28 C -0.049 4.049 29 H 0.145 0.855 30 H 0.154 0.846 31 H 0.138 0.862 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.415 0.585 40 H 0.104 0.896 41 H 0.102 0.898 42 H -0.019 1.019 43 H -0.018 1.018 44 H 0.263 0.737 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.432 22.887 14.360 30.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.035 4.035 3 C -0.050 4.050 4 C -0.088 4.088 5 C -0.138 4.138 6 C -0.102 4.102 7 C -0.090 4.090 8 C -0.033 4.033 9 N -0.261 5.261 10 C -0.066 4.066 11 C -0.161 4.161 12 C 0.036 3.964 13 N -0.367 5.367 14 C 0.300 3.700 15 O -0.469 6.469 16 C -0.160 4.160 17 C 0.005 3.995 18 C -0.582 4.582 19 H 0.094 0.906 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.213 1.213 25 H -0.187 1.187 26 C -0.151 4.151 27 C -0.067 4.067 28 C -0.070 4.070 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.156 0.844 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.252 0.748 40 H 0.122 0.878 41 H 0.120 0.880 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.053 0.947 48 H 0.123 0.877 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.010 23.161 13.855 31.380 hybrid contribution 1.368 -0.652 -0.726 1.680 sum -14.642 22.509 13.130 29.890 Atomic orbital electron populations 1.81286 1.13572 1.10527 1.09231 1.26030 0.92939 0.92223 0.92344 1.16073 0.83114 1.07103 0.98713 1.21414 0.94843 0.96071 0.96489 1.21339 0.93390 0.99673 0.99408 1.21634 1.01192 0.94727 0.92649 1.19723 0.93097 0.99455 0.96767 1.21164 0.99192 0.86574 0.96374 1.62124 1.46223 1.15355 1.02370 1.22063 0.98621 0.94662 0.91231 1.21895 0.99828 0.96323 0.98083 1.21053 0.98578 0.80075 0.96658 1.45998 1.42077 1.08263 1.40411 1.21283 0.78440 0.91696 0.78544 1.90643 1.44879 1.62803 1.48578 1.21637 1.02321 0.90228 1.01862 1.18675 0.92938 0.95190 0.92684 1.21699 1.22462 0.92928 1.21126 0.90646 1.26140 0.95057 1.03798 0.95484 1.70167 1.25329 1.37379 1.24838 0.85376 0.78224 0.78521 0.78133 1.18764 1.21343 1.18669 1.21812 1.02805 0.96917 0.93558 1.22086 0.94210 0.93632 0.96794 1.21136 0.93729 0.95281 0.96846 0.83741 0.82840 0.84427 0.92495 0.87806 0.89573 0.95049 0.94158 0.90571 0.92729 0.74758 0.87817 0.88004 1.00063 0.99966 0.92873 0.89849 0.89293 0.94659 0.87737 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.71 18.54 19.00 0.35 -10.36 16 2 C 0.28 4.77 15.33 88.33 1.35 6.13 16 3 C -0.05 -0.56 5.73 -21.36 -0.12 -0.68 16 4 C -0.07 -0.61 9.76 22.54 0.22 -0.39 16 5 C -0.12 -0.91 10.03 22.23 0.22 -0.68 16 6 C -0.08 -0.70 7.76 22.33 0.17 -0.53 16 7 C -0.09 -0.83 4.13 -19.90 -0.08 -0.91 16 8 C 0.09 0.76 5.42 85.56 0.46 1.23 16 9 N -0.54 -6.59 4.80 -900.91 -4.32 -10.91 16 10 C 0.06 1.04 4.57 86.32 0.39 1.43 16 11 C -0.12 -2.74 5.68 30.65 0.17 -2.56 16 12 C 0.14 3.21 2.52 45.07 0.11 3.32 16 13 N -0.72 -18.50 5.08 -442.14 -2.25 -20.75 16 14 C 0.51 19.53 7.80 87.66 0.68 20.21 16 15 O -0.59 -28.67 15.64 -3.03 -0.05 -28.72 16 16 C -0.12 -4.82 5.64 29.85 0.17 -4.66 16 17 C 0.04 2.39 4.26 29.85 0.13 2.52 16 18 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 19 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 20 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 21 N -0.94 -59.62 13.29 21.45 0.28 -59.34 16 22 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C -0.11 -1.58 5.57 30.65 0.17 -1.41 16 27 C 0.06 0.68 5.42 86.33 0.47 1.15 16 28 C -0.05 -0.50 9.41 22.54 0.21 -0.29 16 29 H 0.14 0.90 8.06 -2.91 -0.02 0.87 16 30 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 31 H 0.14 0.93 8.05 -2.92 -0.02 0.90 16 32 H 0.06 0.40 8.02 -2.38 -0.02 0.38 16 33 H 0.10 0.57 8.08 -2.39 -0.02 0.55 16 34 H 0.09 1.38 5.63 -2.39 -0.01 1.37 16 35 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.57 7.58 -2.39 -0.02 1.55 16 39 H 0.42 7.74 8.61 -92.71 -0.80 6.94 16 40 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 41 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 42 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 43 H -0.02 -1.14 8.10 -2.39 -0.02 -1.16 16 44 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.10 0.73 8.12 -2.39 -0.02 0.71 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -81.35 407.45 1.63 -79.72 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.15 Total: 10.95 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.44 Total: -6.95 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -5.93 Total: -101.36 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -81.35 1.63 -79.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593348288.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.548 kcal (2) G-P(sol) polarization free energy of solvation -81.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds