Wall clock time and date at job start Wed Apr 1 2020 00:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 119.99890 * 2 1 4 4 H 1.48499 * 109.47499 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47473 * 300.00287 * 3 2 1 6 6 H 1.48504 * 109.46894 * 60.00099 * 3 2 1 7 7 C 1.37883 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99982 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99548 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47187 * 175.05039 * 9 7 2 11 11 C 1.46898 * 111.00031 * 295.13784 * 10 9 7 12 12 C 1.53238 * 109.34107 * 187.25181 * 11 10 9 13 13 N 1.47087 * 108.51903 * 306.16717 * 12 11 10 14 14 C 1.34776 * 120.88064 * 231.18710 * 13 12 11 15 15 O 1.21585 * 120.00133 * 184.98999 * 14 13 12 16 16 N 1.34777 * 119.99882 * 4.98792 * 14 13 12 17 17 C 1.46500 * 120.00139 * 174.85455 * 16 14 13 18 18 H 1.09001 * 115.53842 * 350.58945 * 17 16 14 19 19 C 1.53038 * 117.48249 * 205.00499 * 17 16 14 20 20 H 1.08998 * 119.99875 * 141.05379 * 19 17 16 21 21 C 1.53439 * 118.57996 * 343.83962 * 19 17 16 22 22 C 1.50979 * 107.03566 * 297.01898 * 21 19 17 23 23 C 1.38776 * 129.72160 * 179.65343 * 22 21 19 24 24 C 1.38022 * 120.31194 * 180.02562 * 23 22 21 25 25 C 1.38248 * 119.87637 * 0.02562 * 24 23 22 26 26 C 1.38023 * 119.88686 * 0.25339 * 25 24 23 27 27 C 1.37806 * 110.45845 * 359.68668 * 22 21 19 28 28 C 1.50947 * 110.48500 * 359.93390 * 27 22 21 29 29 H 1.08995 * 117.44284 * 220.72948 * 28 27 22 30 30 C 1.47081 * 118.23775 * 51.45408 * 13 12 11 31 31 C 1.46905 * 110.99710 * 59.43173 * 10 9 7 32 32 H 0.96993 * 120.00198 * 359.97438 * 1 2 3 33 33 H 1.09007 * 109.46861 * 55.05297 * 9 7 2 34 34 H 1.08999 * 109.47830 * 295.05404 * 9 7 2 35 35 H 1.08993 * 109.49785 * 67.28468 * 11 10 9 36 36 H 1.09002 * 109.51158 * 307.22081 * 11 10 9 37 37 H 1.08995 * 109.63317 * 186.45591 * 12 11 10 38 38 H 1.09005 * 109.78780 * 65.96615 * 12 11 10 39 39 H 0.97008 * 120.00168 * 354.85322 * 16 14 13 40 40 H 1.08999 * 109.92298 * 177.67967 * 21 19 17 41 41 H 1.08997 * 109.92401 * 56.36849 * 21 19 17 42 42 H 1.08007 * 119.84762 * 0.05683 * 23 22 21 43 43 H 1.07997 * 120.06149 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.05714 * 179.97438 * 25 24 23 45 45 H 1.07990 * 119.84095 * 179.74036 * 26 25 24 46 46 H 1.09004 * 109.62683 * 68.25230 * 30 13 12 47 47 H 1.08993 * 109.62943 * 188.83550 * 30 13 12 48 48 H 1.09001 * 109.49253 * 292.70854 * 31 10 9 49 49 H 1.09000 * 109.49096 * 52.78884 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2012 -3.6131 -0.1206 11 6 2.8906 -3.5795 -1.4174 12 6 3.7328 -4.8497 -1.5774 13 7 4.6149 -4.9759 -0.4072 14 6 5.9397 -5.1730 -0.5576 15 8 6.6402 -5.3656 0.4173 16 7 6.4879 -5.1566 -1.7887 17 6 7.9410 -5.2579 -1.9449 18 1 8.5191 -5.1826 -1.0239 19 6 8.5575 -4.6687 -3.2157 20 1 9.5099 -4.1410 -3.1653 21 6 7.6358 -4.3560 -4.4018 22 6 7.0427 -5.6670 -4.8588 23 6 6.1473 -5.9248 -5.8872 24 6 5.7276 -7.2155 -6.1383 25 6 6.2008 -8.2568 -5.3618 26 6 7.0870 -8.0015 -4.3349 27 6 7.5147 -6.7050 -4.0849 28 6 8.4704 -6.1898 -3.0362 29 1 9.3647 -6.7804 -2.8380 30 6 4.0121 -4.8872 0.9315 31 6 3.1597 -3.6098 0.9926 32 1 -0.4850 0.8400 0.0004 33 1 0.5593 -2.5192 -0.8427 34 1 0.6929 -2.5965 0.9306 35 1 3.5394 -2.7049 -1.4619 36 1 2.1546 -3.5277 -2.2197 37 1 4.3344 -4.7784 -2.4835 38 1 3.0796 -5.7202 -1.6391 39 1 5.9203 -5.0777 -2.5715 40 1 8.2114 -3.9067 -5.2111 41 1 6.8418 -3.6789 -4.0869 42 1 5.7773 -5.1117 -6.4943 43 1 5.0310 -7.4115 -6.9399 44 1 5.8740 -9.2678 -5.5555 45 1 7.4528 -8.8150 -3.7261 46 1 3.3829 -5.7596 1.1082 47 1 4.7984 -4.8407 1.6848 48 1 3.8048 -2.7347 0.9145 49 1 2.6186 -3.5801 1.9383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601592180.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:49 Heat of formation + Delta-G solvation = 29.405230 kcal Electronic energy + Delta-G solvation = -30093.441999 eV Core-core repulsion = 26213.637856 eV Total energy + Delta-G solvation = -3879.804143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17148 -41.07104 -39.17422 -38.12181 -36.04467 -34.71401 -34.11571 -32.56775 -31.93751 -31.12326 -29.74898 -28.59932 -27.16698 -24.84573 -24.44563 -24.05967 -22.88703 -22.23817 -21.31578 -21.02225 -20.72332 -19.30305 -18.35788 -17.73409 -17.03054 -16.83495 -16.64771 -16.35402 -16.19987 -15.98452 -15.76112 -15.52490 -15.21042 -15.17196 -14.84193 -14.55040 -14.37537 -13.90365 -13.73749 -13.72974 -13.49022 -13.44528 -13.01360 -12.93228 -12.70485 -12.56167 -12.47602 -12.30705 -12.26575 -12.08364 -11.97006 -11.81156 -11.70799 -11.64512 -11.30614 -11.08676 -10.62550 -10.19156 -9.72685 -9.64659 -9.22777 -9.03712 -8.18000 -6.36918 0.38843 0.45871 1.33064 1.35853 1.46268 1.51976 1.96138 2.34978 2.60321 2.75101 2.93782 3.07325 3.28081 3.42308 3.56059 3.79250 3.93363 3.94973 4.07641 4.12423 4.14577 4.18712 4.28051 4.33584 4.46481 4.50880 4.55138 4.60541 4.65884 4.73723 4.75957 4.86471 4.87490 4.89605 5.02776 5.03429 5.13939 5.15096 5.19993 5.26943 5.32360 5.39740 5.48587 5.56158 5.63319 5.71537 5.73529 5.86036 6.01429 6.10357 6.20374 6.43925 6.82135 6.85143 7.34719 7.44615 8.84528 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.002954 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.575622 B = 9475.928654 C = 9754.091015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.016 3.984 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.556 4.556 8 H 0.050 0.950 9 C 0.201 3.799 10 N -0.535 5.535 11 C 0.053 3.947 12 C 0.128 3.872 13 N -0.626 5.626 14 C 0.708 3.292 15 O -0.628 6.628 16 N -0.707 5.707 17 C 0.123 3.877 18 H 0.139 0.861 19 C -0.151 4.151 20 H 0.151 0.849 21 C -0.060 4.060 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.078 4.078 28 C -0.136 4.136 29 H 0.134 0.866 30 C 0.144 3.856 31 C 0.055 3.945 32 H 0.266 0.734 33 H 0.015 0.985 34 H 0.007 0.993 35 H 0.019 0.981 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.404 0.596 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.142 0.858 45 H 0.124 0.876 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.016 0.984 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.836 -14.738 -13.352 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.595 4.595 8 H 0.068 0.932 9 C 0.074 3.926 10 N -0.258 5.258 11 C -0.076 4.076 12 C 0.005 3.995 13 N -0.363 5.363 14 C 0.410 3.590 15 O -0.510 6.510 16 N -0.361 5.361 17 C 0.016 3.984 18 H 0.157 0.843 19 C -0.170 4.170 20 H 0.169 0.831 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.078 4.078 28 C -0.156 4.156 29 H 0.152 0.848 30 C 0.021 3.979 31 C -0.074 4.074 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.025 0.975 35 H 0.037 0.963 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.242 0.758 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.153 0.847 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.142 0.858 46 H 0.102 0.898 47 H 0.104 0.896 48 H 0.034 0.966 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.892 -15.186 -12.630 25.352 hybrid contribution 0.183 1.899 -0.183 1.916 sum 16.075 -13.287 -12.813 24.477 Atomic orbital electron populations 1.70043 1.07347 1.27822 1.50959 1.25728 0.95554 1.02535 0.94542 0.85594 0.78719 0.79885 0.77985 1.19796 1.20048 1.20407 1.21966 0.93085 0.93129 1.51342 0.93170 1.19439 0.91042 0.86277 0.95824 1.62416 1.16870 1.44618 1.01926 1.22240 0.96737 0.95789 0.92842 1.21802 0.92230 0.98363 0.87081 1.47386 1.05067 1.75282 1.08538 1.15893 0.81807 0.77544 0.83769 1.90842 1.61478 1.59179 1.39503 1.44557 1.07291 1.77979 1.06311 1.21696 0.80251 1.01964 0.94482 0.84350 1.23664 1.02343 0.96052 0.94923 0.83119 1.20327 0.98377 0.94376 0.96601 1.20681 0.98268 0.95597 0.96626 1.20943 0.97222 0.97899 0.97246 1.21359 1.00072 0.92326 1.00254 1.21328 0.97267 1.00395 0.95290 1.20920 0.98268 0.95818 0.98411 1.19780 0.97834 0.93855 0.96315 1.22212 1.00771 0.93736 0.98911 0.84800 1.21663 0.95812 0.97489 0.82940 1.22328 0.93855 0.95780 0.95450 0.92528 0.96712 0.97485 0.96293 0.89985 0.89194 0.89378 0.75781 0.87799 0.90323 0.84651 0.83778 0.84052 0.85752 0.89831 0.89629 0.96569 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.74 13.29 21.45 0.28 -53.45 16 2 C 0.02 0.90 5.46 84.66 0.46 1.37 16 3 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.56 -30.32 7.76 25.60 0.20 -30.12 16 8 H 0.05 2.77 5.88 -2.91 -0.02 2.75 16 9 C 0.20 10.21 5.11 85.56 0.44 10.65 16 10 N -0.53 -22.00 4.83 -898.88 -4.34 -26.34 16 11 C 0.05 1.91 5.25 86.38 0.45 2.36 16 12 C 0.13 3.55 6.59 86.35 0.57 4.12 16 13 N -0.63 -19.72 3.00 -835.04 -2.51 -22.23 16 14 C 0.71 23.00 8.31 179.05 1.49 24.49 16 15 O -0.63 -24.34 15.41 -3.99 -0.06 -24.40 16 16 N -0.71 -17.98 5.06 -457.83 -2.31 -20.29 16 17 C 0.12 2.65 6.36 44.99 0.29 2.93 16 18 H 0.14 3.27 7.43 -2.39 -0.02 3.25 16 19 C -0.15 -2.37 7.10 -10.49 -0.07 -2.45 16 20 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 21 C -0.06 -0.93 5.91 30.08 0.18 -0.75 16 22 C -0.11 -1.94 5.30 -19.75 -0.10 -2.05 16 23 C -0.12 -1.81 10.04 22.35 0.22 -1.59 16 24 C -0.12 -1.78 10.05 22.22 0.22 -1.56 16 25 C -0.12 -1.90 10.05 22.22 0.22 -1.68 16 26 C -0.12 -2.06 10.04 22.35 0.22 -1.83 16 27 C -0.08 -1.45 5.45 -19.75 -0.11 -1.56 16 28 C -0.14 -2.39 6.87 -11.34 -0.08 -2.47 16 29 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 30 C 0.14 4.72 6.61 86.50 0.57 5.30 16 31 C 0.06 2.15 5.17 86.53 0.45 2.59 16 32 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.01 0.80 8.07 -2.38 -0.02 0.78 16 34 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.02 0.77 7.11 -2.39 -0.02 0.75 16 36 H 0.08 2.85 8.06 -2.39 -0.02 2.84 16 37 H 0.09 2.05 5.63 -2.39 -0.01 2.04 16 38 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 39 H 0.40 9.26 4.30 -92.70 -0.40 8.87 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.08 1.31 7.87 -2.39 -0.02 1.29 16 42 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.12 1.96 8.06 -2.92 -0.02 1.94 16 46 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.09 2.88 7.09 -2.39 -0.02 2.86 16 48 H 0.02 0.71 6.61 -2.39 -0.02 0.70 16 49 H 0.08 2.99 8.11 -2.39 -0.02 2.97 16 Total: -1.00 -68.16 385.43 -0.72 -68.88 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.57 Total: 24.38 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 5.62 Total: 7.76 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -8.88 Total: -122.31 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.06 Total: -24.40 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -68.16 -0.72 -68.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601592180.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.289 kcal (2) G-P(sol) polarization free energy of solvation -68.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds