Wall clock time and date at job start Wed Apr 1 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47090 * 299.99506 * 3 2 1 6 6 H 1.48501 * 109.47131 * 59.99601 * 3 2 1 7 7 C 1.37875 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99988 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47584 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99972 * 170.00036 * 10 9 7 12 12 C 1.53242 * 109.33784 * 187.25823 * 11 10 9 13 13 N 1.47083 * 108.51968 * 306.17092 * 12 11 10 14 14 C 1.34776 * 120.87937 * 231.18651 * 13 12 11 15 15 O 1.21281 * 120.00222 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99816 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46769 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.46735 * 179.97438 * 17 16 14 19 19 C 1.36831 * 125.06348 * 265.27799 * 18 17 16 20 20 C 1.34242 * 109.92830 * 180.17089 * 19 18 17 21 21 C 1.46491 * 106.99712 * 359.60332 * 20 19 18 22 22 C 1.39631 * 134.02846 * 180.26239 * 21 20 19 23 23 C 1.36627 * 119.76415 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.52393 * 0.03111 * 23 22 21 25 25 C 1.37747 * 120.67041 * 359.97438 * 24 23 22 26 26 C 1.37685 * 125.06137 * 85.00321 * 18 17 16 27 27 C 1.47077 * 118.23601 * 51.45729 * 13 12 11 28 28 C 1.46894 * 110.99962 * 294.30476 * 10 9 7 29 29 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47221 * 59.99725 * 9 7 2 31 31 H 1.08998 * 109.47552 * 300.00342 * 9 7 2 32 32 H 1.08998 * 109.49535 * 67.29969 * 11 10 9 33 33 H 1.09001 * 109.49792 * 307.21298 * 11 10 9 34 34 H 1.09000 * 109.63159 * 186.46148 * 12 11 10 35 35 H 1.08997 * 109.62924 * 65.87675 * 12 11 10 36 36 H 1.08998 * 109.46995 * 60.00082 * 16 14 13 37 37 H 1.09000 * 109.47159 * 300.00188 * 16 14 13 38 38 H 1.09007 * 109.46966 * 60.00234 * 17 16 14 39 39 H 1.08994 * 109.47092 * 299.99928 * 17 16 14 40 40 H 1.07993 * 125.03787 * 0.05320 * 19 18 17 41 41 H 1.08002 * 126.50514 * 179.87275 * 20 19 18 42 42 H 1.07993 * 120.11555 * 359.96192 * 22 21 20 43 43 H 1.07994 * 119.73681 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.66481 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.11176 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.62851 * 68.25551 * 27 13 12 47 47 H 1.09007 * 109.62890 * 188.83092 * 27 13 12 48 48 H 1.09000 * 109.49834 * 292.70049 * 28 10 9 49 49 H 1.09005 * 109.49119 * 52.78331 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5639 -6.0031 0.4116 13 7 3.4619 -5.9861 -0.7532 14 6 3.7122 -7.1122 -1.4501 15 8 3.1948 -8.1580 -1.1189 16 6 4.6351 -7.0720 -2.6408 17 6 4.7473 -8.4726 -3.2466 18 7 5.6440 -8.4333 -4.4045 19 6 5.2433 -8.2844 -5.7043 20 6 6.3122 -8.2934 -6.5165 21 6 7.4946 -8.4523 -5.6664 22 6 8.8664 -8.5267 -5.9161 23 6 9.7379 -8.6801 -4.8751 24 6 9.2704 -8.7632 -3.5705 25 6 7.9213 -8.6922 -3.3017 26 6 7.0158 -8.5354 -4.3463 27 6 4.0840 -4.7089 -1.1337 28 6 2.9769 -3.6490 -1.2493 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 0.8798 -5.1264 -0.6112 33 1 0.9161 -4.8191 1.1422 34 1 2.0634 -6.9694 0.4740 35 1 3.1396 -5.8264 1.3201 36 1 5.6217 -6.7332 -2.3246 37 1 4.2365 -6.3841 -3.3864 38 1 3.7608 -8.8118 -3.5628 39 1 5.1462 -9.1601 -2.5008 40 1 4.2189 -8.1775 -6.0289 41 1 6.3026 -8.1971 -7.5921 42 1 9.2371 -8.4635 -6.9284 43 1 10.7988 -8.7373 -5.0687 44 1 9.9718 -8.8840 -2.7581 45 1 7.5675 -8.7583 -2.2834 46 1 4.8029 -4.4102 -0.3708 47 1 4.5889 -4.8190 -2.0935 48 1 2.3152 -3.8993 -2.0785 49 1 3.4273 -2.6720 -1.4249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:28 Heat of formation + Delta-G solvation = 36.872629 kcal Electronic energy + Delta-G solvation = -28873.201954 eV Core-core repulsion = 24993.721622 eV Total energy + Delta-G solvation = -3879.480333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.56068 -40.12845 -37.76569 -37.24026 -34.52485 -34.07800 -32.51542 -31.52873 -30.78379 -29.40490 -28.91910 -28.15683 -25.77137 -24.45709 -23.30716 -22.77907 -22.03712 -21.66562 -20.66125 -20.27347 -18.74625 -17.73670 -16.71742 -16.57460 -16.46984 -15.99984 -15.81635 -15.62416 -14.91333 -14.80671 -14.52930 -14.42101 -14.10329 -14.00410 -13.74906 -13.57313 -13.50199 -13.11165 -12.84291 -12.74904 -12.65127 -12.31103 -11.99619 -11.86357 -11.57507 -11.51086 -11.36991 -11.14353 -11.04772 -11.03926 -10.83223 -10.71022 -10.58223 -9.99941 -9.91079 -9.78341 -9.33692 -8.61843 -8.51851 -8.38059 -7.86601 -7.42030 -6.12162 -4.14537 0.93766 1.43795 2.43495 2.51497 2.54214 3.06816 3.24664 3.32675 3.36326 3.73533 4.32325 4.33771 4.39534 4.46841 4.56493 4.63297 4.70888 4.81990 4.93165 5.03471 5.09322 5.19299 5.24017 5.25295 5.29922 5.35967 5.42427 5.48531 5.50054 5.55175 5.62780 5.66739 5.74412 5.77192 5.87050 5.92713 6.18997 6.27351 6.34607 6.36845 6.42104 6.54995 6.56882 6.60300 7.02704 7.08140 7.13898 7.19837 7.39303 7.67539 7.93563 8.03967 8.06741 8.39783 8.92806 9.50442 10.98615 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.002209 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.473785 B =12671.158855 C =13605.046147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.041 3.959 12 C 0.118 3.882 13 N -0.604 5.604 14 C 0.519 3.481 15 O -0.553 6.553 16 C -0.158 4.158 17 C 0.128 3.872 18 N -0.483 5.483 19 C 0.055 3.945 20 C -0.208 4.208 21 C -0.110 4.110 22 C -0.073 4.073 23 C -0.149 4.149 24 C -0.101 4.101 25 C -0.127 4.127 26 C 0.097 3.903 27 C 0.107 3.893 28 C 0.050 3.950 29 H 0.262 0.738 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.026 0.974 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.168 0.832 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.025 0.975 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.446 -17.783 -9.947 24.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.089 4.089 12 C -0.005 4.005 13 N -0.337 5.337 14 C 0.306 3.694 15 O -0.432 6.432 16 C -0.199 4.199 17 C 0.006 3.994 18 N -0.166 5.166 19 C -0.070 4.070 20 C -0.232 4.232 21 C -0.115 4.115 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.121 4.121 25 C -0.148 4.148 26 C -0.008 4.008 27 C -0.016 4.016 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.136 0.864 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.043 0.957 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 14.084 -18.134 -9.122 24.707 hybrid contribution -0.352 1.101 -0.611 1.307 sum 13.733 -17.033 -9.734 23.947 Atomic orbital electron populations 1.69964 1.06107 1.26823 1.50722 1.25002 0.94873 0.99415 0.95304 0.86439 0.80043 0.83340 0.77582 1.19607 1.21089 1.20952 1.21158 0.93481 0.89822 1.50422 0.91749 1.19737 0.89980 0.87152 0.96271 1.62079 1.28138 1.02746 1.33125 1.22408 0.94921 0.90518 1.01008 1.21788 0.91715 0.99578 0.87398 1.48244 1.46535 1.08619 1.30297 1.20275 0.81870 0.83440 0.83806 1.90688 1.52706 1.30074 1.69781 1.22058 1.01244 0.99304 0.97306 1.21480 0.94597 0.96555 0.86786 1.44072 1.04319 1.61843 1.06344 1.21877 0.99766 1.03156 0.82228 1.21676 0.90264 1.12567 0.98730 1.19246 0.93594 1.06318 0.92346 1.20263 0.90915 0.98864 0.99078 1.20620 0.99430 1.04143 0.92632 1.20804 0.94228 1.00137 0.96898 1.20071 0.92228 1.05600 0.96896 1.18287 0.83048 1.03882 0.95611 1.22162 0.96296 0.82559 1.00564 1.22408 0.95001 0.99039 0.91435 0.92870 0.99101 0.94963 0.95544 0.89951 0.89332 0.90805 0.88265 0.88117 0.88286 0.88781 0.81478 0.83650 0.86229 0.86205 0.85879 0.86400 0.90330 0.90222 0.95671 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.51 -13.62 8.41 -34.44 -0.29 -13.91 16 8 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 9 C 0.19 4.80 4.72 -4.98 -0.02 4.78 16 10 N -0.54 -10.73 4.62 -235.47 -1.09 -11.82 16 11 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 12 C 0.12 1.73 6.60 -3.60 -0.02 1.71 16 13 N -0.60 -8.41 3.00 -172.17 -0.52 -8.93 16 14 C 0.52 6.84 7.71 -10.98 -0.08 6.75 16 15 O -0.55 -8.77 15.43 5.56 0.09 -8.69 16 16 C -0.16 -1.56 4.39 -27.88 -0.12 -1.68 16 17 C 0.13 1.21 5.29 -4.04 -0.02 1.19 16 18 N -0.48 -4.84 2.78 -114.42 -0.32 -5.15 16 19 C 0.05 0.49 11.27 -16.73 -0.19 0.30 16 20 C -0.21 -1.98 11.08 -37.67 -0.42 -2.39 16 21 C -0.11 -1.21 6.37 -105.14 -0.67 -1.88 16 22 C -0.07 -0.69 10.05 -39.64 -0.40 -1.09 16 23 C -0.15 -1.31 9.97 -39.94 -0.40 -1.71 16 24 C -0.10 -0.91 10.01 -39.54 -0.40 -1.30 16 25 C -0.13 -1.28 10.00 -39.43 -0.39 -1.67 16 26 C 0.10 1.08 6.81 -83.99 -0.57 0.51 16 27 C 0.11 1.42 6.53 -3.37 -0.02 1.40 16 28 C 0.05 0.87 5.47 -3.47 -0.02 0.85 16 29 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 30 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 31 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.38 7.99 -51.93 -0.41 0.96 16 34 H 0.09 1.29 7.06 -51.93 -0.37 0.92 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.10 0.92 7.99 -51.93 -0.41 0.50 16 37 H 0.10 0.93 7.67 -51.93 -0.40 0.54 16 38 H 0.10 0.91 8.07 -51.92 -0.42 0.49 16 39 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 45 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 46 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.08 0.85 6.02 -51.92 -0.31 0.53 16 48 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -31.81 397.77 -11.95 -43.77 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.67 Total: 0.20 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -4.16 Total: -6.04 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: -1.19 Total: -51.08 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.81 -11.95 -43.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.638 kcal (2) G-P(sol) polarization free energy of solvation -31.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds