Wall clock time and date at job start Wed Apr 1 2020 00:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99813 * 2 1 4 4 H 1.48500 * 109.47100 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47090 * 299.99506 * 3 2 1 6 6 H 1.48501 * 109.47131 * 59.99601 * 3 2 1 7 7 C 1.37875 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99988 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47584 * 179.97438 * 9 7 2 11 11 C 1.46895 * 110.99972 * 170.00036 * 10 9 7 12 12 C 1.53242 * 109.33784 * 187.25823 * 11 10 9 13 13 N 1.47083 * 108.51968 * 306.17092 * 12 11 10 14 14 C 1.34776 * 120.87937 * 231.18651 * 13 12 11 15 15 O 1.21281 * 120.00222 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99816 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46769 * 179.97438 * 16 14 13 18 18 N 1.46500 * 109.46735 * 179.97438 * 17 16 14 19 19 C 1.36831 * 125.06348 * 265.27799 * 18 17 16 20 20 C 1.34242 * 109.92830 * 180.17089 * 19 18 17 21 21 C 1.46491 * 106.99712 * 359.60332 * 20 19 18 22 22 C 1.39631 * 134.02846 * 180.26239 * 21 20 19 23 23 C 1.36627 * 119.76415 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.52393 * 0.03111 * 23 22 21 25 25 C 1.37747 * 120.67041 * 359.97438 * 24 23 22 26 26 C 1.37685 * 125.06137 * 85.00321 * 18 17 16 27 27 C 1.47077 * 118.23601 * 51.45729 * 13 12 11 28 28 C 1.46894 * 110.99962 * 294.30476 * 10 9 7 29 29 H 0.97003 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.47221 * 59.99725 * 9 7 2 31 31 H 1.08998 * 109.47552 * 300.00342 * 9 7 2 32 32 H 1.08998 * 109.49535 * 67.29969 * 11 10 9 33 33 H 1.09001 * 109.49792 * 307.21298 * 11 10 9 34 34 H 1.09000 * 109.63159 * 186.46148 * 12 11 10 35 35 H 1.08997 * 109.62924 * 65.87675 * 12 11 10 36 36 H 1.08998 * 109.46995 * 60.00082 * 16 14 13 37 37 H 1.09000 * 109.47159 * 300.00188 * 16 14 13 38 38 H 1.09007 * 109.46966 * 60.00234 * 17 16 14 39 39 H 1.08994 * 109.47092 * 299.99928 * 17 16 14 40 40 H 1.07993 * 125.03787 * 0.05320 * 19 18 17 41 41 H 1.08002 * 126.50514 * 179.87275 * 20 19 18 42 42 H 1.07993 * 120.11555 * 359.96192 * 22 21 20 43 43 H 1.07994 * 119.73681 * 180.02562 * 23 22 21 44 44 H 1.08005 * 119.66481 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.11176 * 179.97438 * 25 24 23 46 46 H 1.08999 * 109.62851 * 68.25551 * 27 13 12 47 47 H 1.09007 * 109.62890 * 188.83092 * 27 13 12 48 48 H 1.09000 * 109.49834 * 292.70049 * 28 10 9 49 49 H 1.09005 * 109.49119 * 52.78331 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5639 -6.0031 0.4116 13 7 3.4619 -5.9861 -0.7532 14 6 3.7122 -7.1122 -1.4501 15 8 3.1948 -8.1580 -1.1189 16 6 4.6351 -7.0720 -2.6408 17 6 4.7473 -8.4726 -3.2466 18 7 5.6440 -8.4333 -4.4045 19 6 5.2433 -8.2844 -5.7043 20 6 6.3122 -8.2934 -6.5165 21 6 7.4946 -8.4523 -5.6664 22 6 8.8664 -8.5267 -5.9161 23 6 9.7379 -8.6801 -4.8751 24 6 9.2704 -8.7632 -3.5705 25 6 7.9213 -8.6922 -3.3017 26 6 7.0158 -8.5354 -4.3463 27 6 4.0840 -4.7089 -1.1337 28 6 2.9769 -3.6490 -1.2493 29 1 -0.4850 0.8401 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8902 32 1 0.8798 -5.1264 -0.6112 33 1 0.9161 -4.8191 1.1422 34 1 2.0634 -6.9694 0.4740 35 1 3.1396 -5.8264 1.3201 36 1 5.6217 -6.7332 -2.3246 37 1 4.2365 -6.3841 -3.3864 38 1 3.7608 -8.8118 -3.5628 39 1 5.1462 -9.1601 -2.5008 40 1 4.2189 -8.1775 -6.0289 41 1 6.3026 -8.1971 -7.5921 42 1 9.2371 -8.4635 -6.9284 43 1 10.7988 -8.7373 -5.0687 44 1 9.9718 -8.8840 -2.7581 45 1 7.5675 -8.7583 -2.2834 46 1 4.8029 -4.4102 -0.3708 47 1 4.5889 -4.8190 -2.0935 48 1 2.3152 -3.8993 -2.0785 49 1 3.4273 -2.6720 -1.4249 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210158.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:27 Heat of formation + Delta-G solvation = 19.592313 kcal Electronic energy + Delta-G solvation = -28873.951285 eV Core-core repulsion = 24993.721622 eV Total energy + Delta-G solvation = -3880.229663 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26050 -41.25457 -39.09945 -37.95869 -36.02234 -34.88309 -34.39909 -32.52691 -31.79570 -30.34243 -29.85446 -29.43866 -27.33015 -25.46854 -24.61892 -23.76426 -23.38583 -22.40937 -21.94885 -21.01228 -19.90126 -18.65843 -18.50985 -17.55236 -17.37568 -17.07322 -16.76637 -16.67023 -16.25355 -16.03764 -15.78255 -15.52668 -15.34013 -15.17105 -14.87670 -14.57696 -14.43857 -14.18426 -13.97755 -13.68894 -13.64226 -13.40612 -13.37862 -13.05162 -12.77555 -12.63556 -12.51845 -12.45418 -12.36415 -12.27418 -12.15659 -12.13150 -11.79664 -11.70031 -11.28761 -10.98324 -10.63951 -10.56128 -9.83054 -9.09117 -9.08133 -8.55231 -8.21759 -6.32054 0.25564 0.73640 1.42113 1.43394 1.47205 1.56210 1.63737 1.84875 2.08286 2.39922 3.03550 3.10811 3.19934 3.40428 3.66297 3.70296 3.82630 3.94599 4.00136 4.03187 4.17218 4.19762 4.23554 4.29737 4.31138 4.37021 4.42414 4.53975 4.61551 4.68127 4.70141 4.76351 4.81947 4.84263 4.91480 4.98723 4.99203 5.09985 5.16684 5.20400 5.21681 5.38406 5.61011 5.62652 5.74916 5.88816 5.93807 6.00704 6.18938 6.34905 6.35709 6.39932 6.53700 6.84184 6.99783 7.38221 8.89711 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.002209 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.473785 B =12671.158855 C =13605.046147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.208 3.792 10 N -0.540 5.540 11 C 0.043 3.957 12 C 0.127 3.873 13 N -0.610 5.610 14 C 0.521 3.479 15 O -0.580 6.580 16 C -0.146 4.146 17 C 0.133 3.867 18 N -0.486 5.486 19 C 0.050 3.950 20 C -0.220 4.220 21 C -0.136 4.136 22 C -0.085 4.085 23 C -0.153 4.153 24 C -0.106 4.106 25 C -0.142 4.142 26 C 0.076 3.924 27 C 0.120 3.880 28 C 0.049 3.951 29 H 0.264 0.736 30 H -0.041 1.041 31 H 0.005 0.995 32 H 0.016 0.984 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.192 0.808 41 H 0.161 0.839 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.124 0.876 46 H 0.087 0.913 47 H 0.114 0.886 48 H 0.017 0.983 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.855 -17.924 -10.668 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.088 0.912 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.342 5.342 14 C 0.311 3.689 15 O -0.461 6.461 16 C -0.187 4.187 17 C 0.011 3.989 18 N -0.169 5.169 19 C -0.075 4.075 20 C -0.245 4.245 21 C -0.140 4.140 22 C -0.104 4.104 23 C -0.172 4.172 24 C -0.125 4.125 25 C -0.163 4.163 26 C -0.030 4.030 27 C -0.002 4.002 28 C -0.080 4.080 29 H 0.073 0.927 30 H -0.023 1.023 31 H 0.023 0.977 32 H 0.034 0.966 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.209 0.791 41 H 0.179 0.821 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.142 0.858 46 H 0.105 0.895 47 H 0.132 0.868 48 H 0.035 0.965 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 16.522 -18.298 -9.854 26.550 hybrid contribution -1.106 1.066 -0.405 1.589 sum 15.416 -17.232 -10.259 25.295 Atomic orbital electron populations 1.70098 1.07868 1.27857 1.51854 1.25937 0.95693 1.03323 0.94838 0.85323 0.79215 0.78505 0.77510 1.18193 1.20658 1.20757 1.21476 0.93818 0.90655 1.49847 0.91221 1.19379 0.90088 0.88934 0.93425 1.62004 1.27057 1.02579 1.34807 1.22440 0.95667 0.90044 1.00470 1.21619 0.91319 0.98327 0.88303 1.48312 1.46519 1.09183 1.30182 1.20767 0.81602 0.82566 0.84011 1.90682 1.53825 1.31018 1.70543 1.21998 1.00860 0.99918 0.95903 1.21390 0.94613 0.96174 0.86683 1.44112 1.04054 1.62029 1.06670 1.22336 1.00887 1.02448 0.81787 1.21976 0.90071 1.12781 0.99631 1.19635 0.94586 1.06987 0.92829 1.20563 0.90729 0.98837 1.00223 1.20951 1.00569 1.03290 0.92432 1.21138 0.94299 0.99315 0.97759 1.20290 0.92730 1.06113 0.97135 1.18568 0.83638 1.04694 0.96096 1.22110 0.94559 0.80802 1.02753 1.22455 0.95605 1.00099 0.89827 0.92744 1.02295 0.97726 0.96610 0.90118 0.88977 0.89967 0.87041 0.86913 0.88033 0.89361 0.79062 0.82112 0.84727 0.84009 0.83835 0.85760 0.89515 0.86796 0.96518 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 13.29 21.45 0.28 -55.00 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.52 -28.06 8.41 25.60 0.22 -27.85 16 8 H 0.07 3.61 7.13 -2.91 -0.02 3.59 16 9 C 0.21 10.70 4.72 85.55 0.40 11.10 16 10 N -0.54 -21.83 4.62 -898.89 -4.15 -25.98 16 11 C 0.04 1.49 5.62 86.39 0.49 1.97 16 12 C 0.13 3.61 6.60 86.35 0.57 4.18 16 13 N -0.61 -15.81 3.00 -817.03 -2.45 -18.27 16 14 C 0.52 12.71 7.71 87.66 0.68 13.38 16 15 O -0.58 -17.59 15.43 -3.03 -0.05 -17.64 16 16 C -0.15 -2.51 4.39 29.85 0.13 -2.38 16 17 C 0.13 2.31 5.29 86.38 0.46 2.77 16 18 N -0.49 -8.97 2.78 -515.93 -1.43 -10.40 16 19 C 0.05 0.81 11.27 83.00 0.94 1.75 16 20 C -0.22 -3.90 11.08 23.51 0.26 -3.64 16 21 C -0.14 -2.82 6.37 -20.20 -0.13 -2.95 16 22 C -0.09 -1.51 10.05 22.23 0.22 -1.29 16 23 C -0.15 -2.41 9.97 22.03 0.22 -2.19 16 24 C -0.11 -1.72 10.01 22.30 0.22 -1.49 16 25 C -0.14 -2.67 10.00 22.37 0.22 -2.45 16 26 C 0.08 1.58 6.81 39.03 0.27 1.85 16 27 C 0.12 2.91 6.53 86.50 0.57 3.48 16 28 C 0.05 1.67 5.47 86.54 0.47 2.15 16 29 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 30 H -0.04 -2.30 8.12 -2.38 -0.02 -2.32 16 31 H 0.00 0.26 7.97 -2.39 -0.02 0.24 16 32 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 2.78 7.99 -2.39 -0.02 2.76 16 34 H 0.09 2.59 7.06 -2.39 -0.02 2.58 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.11 1.71 7.99 -2.39 -0.02 1.69 16 37 H 0.11 1.73 7.67 -2.39 -0.02 1.71 16 38 H 0.10 1.70 8.07 -2.38 -0.02 1.68 16 39 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.12 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.11 2.01 6.02 -2.38 -0.01 2.00 16 48 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.09 3.14 6.67 -2.38 -0.02 3.12 16 Total: -1.00 -69.66 397.77 1.82 -67.84 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.93 Total: 15.88 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: 6.66 Total: -1.15 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -7.75 Total: -109.64 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.05 Total: -17.64 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -69.66 1.82 -67.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210158.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.433 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds