Wall clock time and date at job start Wed Apr 1 2020 00:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86800 * 120.00363 * 2 1 4 4 H 1.48498 * 109.46988 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46721 * 119.99989 * 3 2 1 6 6 H 1.48501 * 109.46947 * 239.99996 * 3 2 1 7 7 C 1.39018 * 119.99461 * 179.72550 * 2 1 3 8 8 H 1.08002 * 119.99743 * 161.74051 * 7 2 1 9 9 N 1.36886 * 120.00188 * 341.73913 * 7 2 1 10 10 C 1.38204 * 125.62411 * 137.62410 * 9 7 2 11 11 C 1.46896 * 125.43410 * 0.02562 * 10 9 7 12 12 O 1.21665 * 120.00214 * 173.37599 * 11 10 9 13 13 N 1.34784 * 119.99725 * 353.37460 * 11 10 9 14 14 C 1.46496 * 119.99498 * 184.70673 * 13 11 10 15 15 C 1.53000 * 109.46843 * 180.02562 * 14 13 11 16 16 N 1.46902 * 109.47500 * 180.02562 * 15 14 13 17 17 C 1.46852 * 110.99695 * 294.20774 * 16 15 14 18 18 C 1.53034 * 109.52068 * 174.15789 * 17 16 15 19 19 C 1.53119 * 109.28029 * 59.18334 * 18 17 16 20 20 C 1.53126 * 109.15579 * 302.33979 * 19 18 17 21 21 C 1.46846 * 111.00367 * 169.99995 * 16 15 14 22 22 C 1.36124 * 109.12990 * 179.82530 * 10 9 7 23 23 C 1.41697 * 107.74508 * 0.43303 * 22 10 9 24 24 C 1.40027 * 133.34574 * 179.76063 * 23 22 10 25 25 C 1.36575 * 119.82961 * 179.97438 * 24 23 22 26 26 C 1.38857 * 120.59758 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.63827 * 0.02562 * 26 25 24 28 28 C 1.37844 * 125.61714 * 317.93088 * 9 7 2 29 29 H 0.97004 * 120.00622 * 173.97097 * 1 2 3 30 30 H 0.96998 * 119.99793 * 4.70849 * 13 11 10 31 31 H 1.09002 * 109.47227 * 300.00030 * 14 13 11 32 32 H 1.08997 * 109.47672 * 60.00363 * 14 13 11 33 33 H 1.09002 * 109.46951 * 299.99853 * 15 14 13 34 34 H 1.08997 * 109.47430 * 59.99863 * 15 14 13 35 35 H 1.09000 * 109.46036 * 294.17424 * 17 16 15 36 36 H 1.09002 * 109.46117 * 54.14096 * 17 16 15 37 37 H 1.08997 * 109.50629 * 299.23702 * 18 17 16 38 38 H 1.09003 * 109.49899 * 179.12145 * 18 17 16 39 39 H 1.08998 * 109.52051 * 182.43937 * 19 18 17 40 40 H 1.08996 * 109.52535 * 62.24197 * 19 18 17 41 41 H 1.08994 * 109.50536 * 297.71332 * 20 19 18 42 42 H 1.09001 * 109.49934 * 177.59820 * 20 19 18 43 43 H 1.09006 * 109.45944 * 305.85181 * 21 16 15 44 44 H 1.08999 * 109.46313 * 65.81890 * 21 16 15 45 45 H 1.08002 * 126.12511 * 180.16777 * 22 10 9 46 46 H 1.07996 * 120.08364 * 359.96556 * 24 23 22 47 47 H 1.07997 * 119.70408 * 180.02562 * 25 24 23 48 48 H 1.08004 * 119.68603 * 180.02562 * 26 25 24 49 49 H 1.07997 * 120.09879 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1012 1.6962 1.2125 6 1 3.1013 1.6962 -1.2125 7 6 2.0084 -1.2040 0.0058 8 1 3.0476 -1.2290 -0.2872 9 7 1.3756 -2.3578 0.3828 10 6 1.4986 -3.5844 -0.2420 11 6 2.3318 -3.8605 -1.4199 12 8 2.4622 -5.0025 -1.8186 13 7 2.9518 -2.8486 -2.0589 14 6 3.6979 -3.1092 -3.2924 15 6 4.3002 -1.8015 -3.8100 16 7 5.0480 -2.0625 -5.0472 17 6 6.2168 -2.9124 -4.7862 18 6 6.8862 -3.2824 -6.1117 19 6 7.3136 -2.0032 -6.8367 20 6 6.0858 -1.1142 -7.0532 21 6 5.4396 -0.8070 -5.7004 22 6 0.7279 -4.4969 0.4110 23 6 0.0834 -3.8301 1.4824 24 6 -0.8142 -4.2469 2.4730 25 6 -1.2734 -3.3497 3.3946 26 6 -0.8580 -2.0252 3.3596 27 6 0.0249 -1.5911 2.3941 28 6 0.5060 -2.4863 1.4446 29 1 -0.4851 -0.8354 -0.0882 30 1 2.9038 -1.9479 -1.7021 31 1 4.4974 -3.8219 -3.0897 32 1 3.0250 -3.5222 -4.0438 33 1 3.5009 -1.0885 -4.0126 34 1 4.9733 -1.3888 -3.0585 35 1 6.9261 -2.3718 -4.1595 36 1 5.8985 -3.8204 -4.2741 37 1 6.1818 -3.8350 -6.7334 38 1 7.7627 -3.9003 -5.9166 39 1 7.7519 -2.2602 -7.8010 40 1 8.0474 -1.4699 -6.2324 41 1 5.3688 -1.6327 -7.6897 42 1 6.3905 -0.1830 -7.5309 43 1 4.5568 -0.1859 -5.8523 44 1 6.1526 -0.2763 -5.0694 45 1 0.6229 -5.5409 0.1554 46 1 -1.1425 -5.2751 2.5081 47 1 -1.9653 -3.6734 4.1581 48 1 -1.2303 -1.3282 4.0959 49 1 0.3418 -0.5589 2.3747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609163149.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:10 Heat of formation + Delta-G solvation = 13.740201 kcal Electronic energy + Delta-G solvation = -29706.037803 eV Core-core repulsion = 25825.554373 eV Total energy + Delta-G solvation = -3880.483430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.72044 -39.30450 -38.45638 -36.12212 -35.16465 -33.88485 -33.04736 -31.04253 -30.66428 -29.46300 -28.64585 -27.66283 -24.91479 -24.56998 -23.28661 -22.80448 -21.34035 -21.08552 -20.21997 -19.87834 -19.42733 -18.49344 -16.73172 -16.13421 -15.75048 -15.60700 -15.38473 -15.00755 -14.67138 -14.60478 -14.52858 -14.21315 -13.93713 -13.86439 -13.49657 -13.24138 -13.18122 -13.09171 -12.93214 -12.42419 -12.32529 -12.15447 -11.83244 -11.67005 -11.39095 -11.32253 -11.23369 -10.92485 -10.88323 -10.63693 -10.57184 -10.51830 -10.42832 -10.39905 -9.94677 -9.48933 -9.25746 -8.86881 -8.54735 -8.45648 -7.60457 -7.09228 -6.80869 -4.77180 1.67802 2.57228 2.94579 3.00467 3.03951 3.19972 3.42691 3.75170 4.11139 4.16294 4.32075 4.60844 4.63862 4.65279 4.74006 4.84756 4.93714 5.11835 5.15014 5.26381 5.32542 5.42949 5.51516 5.55740 5.58046 5.67343 5.71497 5.73673 5.79529 5.80049 5.92713 5.97424 6.00401 6.05366 6.12178 6.20189 6.26371 6.37010 6.50815 6.72643 6.83282 6.87765 6.93611 6.96517 7.03393 7.15046 7.34603 7.43628 7.50725 7.73467 7.76261 8.08625 8.19526 8.58599 8.88059 9.03950 10.00821 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003062 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.264355 B = 9141.749239 C =10797.977066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.029 3.971 3 Si 1.074 2.926 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.450 4.450 8 H 0.101 0.899 9 N -0.266 5.266 10 C -0.020 4.020 11 C 0.596 3.404 12 O -0.557 6.557 13 N -0.729 5.729 14 C 0.123 3.877 15 C 0.045 3.955 16 N -0.533 5.533 17 C 0.048 3.952 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.116 4.116 21 C 0.055 3.945 22 C -0.164 4.164 23 C -0.129 4.129 24 C -0.081 4.081 25 C -0.160 4.160 26 C -0.135 4.135 27 C -0.081 4.081 28 C 0.069 3.931 29 H 0.292 0.708 30 H 0.416 0.584 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.134 0.866 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.110 0.890 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 1.212 -7.321 11.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.188 4.188 3 Si 0.897 3.103 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.577 4.577 8 H 0.118 0.882 9 N 0.070 4.930 10 C -0.135 4.135 11 C 0.385 3.615 12 O -0.436 6.436 13 N -0.390 5.390 14 C -0.001 4.001 15 C -0.084 4.084 16 N -0.259 5.259 17 C -0.080 4.080 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.073 4.073 22 C -0.192 4.192 23 C -0.134 4.134 24 C -0.099 4.099 25 C -0.179 4.179 26 C -0.155 4.155 27 C -0.101 4.101 28 C -0.045 4.045 29 H 0.104 0.896 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.152 0.848 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.128 0.872 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.987 2.147 -8.054 12.257 hybrid contribution 0.643 -0.764 0.641 1.187 sum 9.631 1.382 -7.413 12.232 Atomic orbital electron populations 1.70590 1.06989 1.33317 1.33545 1.26827 0.96157 1.02818 0.92954 0.83431 0.75298 0.73730 0.77886 1.19396 1.20006 1.20157 1.20427 0.97299 0.85756 1.54254 0.88163 1.40123 1.29950 1.06267 1.16694 1.20193 1.06635 0.88221 0.98407 1.17196 0.78172 0.84320 0.81784 1.90721 1.63827 1.21268 1.67773 1.46646 1.52919 1.13441 1.25984 1.21163 0.95922 0.96248 0.86776 1.22233 0.97956 0.97625 0.90543 1.61794 1.23298 1.16505 1.24259 1.22215 0.91038 0.97726 0.96981 1.21583 0.99988 0.97430 0.96435 1.21588 0.97509 0.96501 1.00341 1.21583 0.97367 0.99669 0.96786 1.22096 0.99441 0.90609 0.95129 1.20419 1.02040 0.98424 0.98311 1.18015 1.02841 0.93278 0.99256 1.20127 0.97043 0.98411 0.94363 1.20333 1.03187 0.93898 1.00473 1.20612 0.99757 0.95731 0.99402 1.20198 0.97845 0.98391 0.93648 1.18433 0.99538 0.94626 0.91885 0.89576 0.73829 0.91946 0.91092 0.89774 0.94101 0.94900 0.90117 0.90966 0.91624 0.91918 0.92406 0.90995 0.91629 0.90537 0.94890 0.84774 0.87428 0.87541 0.87224 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.59 12.01 55.50 0.67 -19.93 16 2 C 0.03 0.68 4.40 -17.47 -0.08 0.60 16 3 Si 1.07 19.81 29.96 -169.99 -5.09 14.72 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.28 -4.68 7.11 56.52 0.40 -4.27 16 7 C -0.45 -10.57 7.78 -15.01 -0.12 -10.68 16 8 H 0.10 2.22 6.29 -52.49 -0.33 1.89 16 9 N -0.27 -6.52 2.57 -56.08 -0.14 -6.67 16 10 C -0.02 -0.48 6.77 -82.25 -0.56 -1.03 16 11 C 0.60 13.57 7.76 -12.75 -0.10 13.47 16 12 O -0.56 -13.45 16.86 5.22 0.09 -13.37 16 13 N -0.73 -14.26 5.49 -61.55 -0.34 -14.60 16 14 C 0.12 2.00 5.61 -4.04 -0.02 1.98 16 15 C 0.04 0.61 5.07 -3.82 -0.02 0.59 16 16 N -0.53 -6.44 4.66 -234.67 -1.09 -7.53 16 17 C 0.05 0.53 5.29 -3.83 -0.02 0.51 16 18 C -0.12 -1.07 6.09 -26.65 -0.16 -1.24 16 19 C -0.12 -1.01 6.00 -26.60 -0.16 -1.17 16 20 C -0.12 -1.01 6.09 -26.65 -0.16 -1.18 16 21 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 22 C -0.16 -3.82 10.55 -39.02 -0.41 -4.23 16 23 C -0.13 -2.97 6.16 -106.89 -0.66 -3.63 16 24 C -0.08 -1.60 10.06 -39.51 -0.40 -2.00 16 25 C -0.16 -2.97 9.97 -39.95 -0.40 -3.37 16 26 C -0.13 -2.65 10.02 -39.50 -0.40 -3.04 16 27 C -0.08 -1.84 8.57 -39.41 -0.34 -2.18 16 28 C 0.07 1.69 5.42 -83.83 -0.45 1.23 16 29 H 0.29 7.84 6.93 -40.82 -0.28 7.56 16 30 H 0.42 8.20 4.25 -40.82 -0.17 8.03 16 31 H 0.06 1.01 6.43 -51.93 -0.33 0.67 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.16 7.99 -51.93 -0.41 0.74 16 34 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.95 6.21 -51.93 -0.32 0.62 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 44 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.13 2.88 8.06 -52.49 -0.42 2.45 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 48 H 0.11 1.84 8.06 -52.48 -0.42 1.42 16 49 H 0.12 2.76 6.77 -52.49 -0.36 2.40 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -27.62 386.46 -11.90 -39.52 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -7.34 Total: 16.84 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -4.47 Total: -14.80 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.91 Total: -48.72 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.09 Total: 14.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -27.62 -11.90 -39.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609163149.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.259 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds