Wall clock time and date at job start Wed Apr 1 2020 00:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47361 * 272.91226 * 3 2 1 5 5 H 1.48496 * 109.47248 * 32.91445 * 3 2 1 6 6 H 1.48503 * 109.47054 * 152.91105 * 3 2 1 7 7 C 1.38812 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00086 * 339.35579 * 7 2 1 9 9 N 1.36939 * 119.99645 * 159.36335 * 7 2 1 10 10 C 1.46922 * 120.63172 * 332.61866 * 9 7 2 11 11 C 1.53189 * 108.78002 * 233.58949 * 10 9 7 12 12 C 1.53039 * 109.31430 * 305.36911 * 11 10 9 13 13 N 1.46495 * 109.46088 * 181.38306 * 12 11 10 14 14 C 1.34784 * 119.99908 * 154.97457 * 13 12 11 15 15 O 1.21584 * 119.99689 * 359.97438 * 14 13 12 16 16 N 1.34770 * 119.99764 * 179.97438 * 14 13 12 17 17 C 1.46499 * 119.99845 * 179.97438 * 16 14 13 18 18 H 1.09003 * 115.54058 * 350.79794 * 17 16 14 19 19 C 1.53052 * 117.48156 * 205.21240 * 17 16 14 20 20 H 1.09001 * 119.41399 * 140.82154 * 19 17 16 21 21 C 1.53440 * 119.20229 * 343.48468 * 19 17 16 22 22 C 1.50965 * 107.03535 * 296.99828 * 21 19 17 23 23 C 1.38787 * 129.71883 * 179.68423 * 22 21 19 24 24 C 1.38018 * 120.30692 * 180.02562 * 23 22 21 25 25 C 1.38255 * 119.88155 * 359.97438 * 24 23 22 26 26 C 1.38015 * 119.88441 * 359.97438 * 25 24 23 27 27 C 1.37834 * 110.45782 * 0.49877 * 22 21 19 28 28 C 1.50937 * 110.46594 * 358.63237 * 27 22 21 29 29 H 1.09004 * 117.16816 * 222.30145 * 28 27 22 30 30 C 1.53040 * 109.52679 * 61.36393 * 12 11 10 31 31 C 1.46930 * 120.62988 * 152.60212 * 9 7 2 32 32 H 0.97002 * 120.00669 * 359.97438 * 1 2 3 33 33 H 1.09002 * 109.58782 * 113.80011 * 10 9 7 34 34 H 1.09002 * 109.58854 * 353.37769 * 10 9 7 35 35 H 1.08999 * 109.50291 * 185.41251 * 11 10 9 36 36 H 1.09003 * 109.51985 * 65.33424 * 11 10 9 37 37 H 1.09001 * 109.45810 * 301.35365 * 12 11 10 38 38 H 0.96999 * 120.00098 * 334.96932 * 13 12 11 39 39 H 0.96999 * 120.00241 * 359.97438 * 16 14 13 40 40 H 1.08996 * 109.92155 * 56.34891 * 21 19 17 41 41 H 1.09009 * 109.91862 * 177.45134 * 21 19 17 42 42 H 1.07990 * 119.84886 * 0.03551 * 23 22 21 43 43 H 1.07995 * 120.05937 * 180.02562 * 24 23 22 44 44 H 1.07994 * 120.05876 * 180.02562 * 25 24 23 45 45 H 1.08002 * 119.84121 * 179.97438 * 26 25 24 46 46 H 1.09004 * 109.49950 * 58.58776 * 30 12 11 47 47 H 1.09002 * 109.49905 * 178.67707 * 30 12 11 48 48 H 1.09001 * 109.58509 * 246.19382 * 31 9 7 49 49 H 1.08999 * 109.58493 * 6.62286 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4360 2.0821 -1.3983 5 1 1.4797 2.6341 0.7608 6 1 3.5771 1.4232 0.6376 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1075 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 3.8176 -0.2582 -1.3885 11 6 4.4628 -1.0073 -2.5586 12 6 5.5294 -1.9639 -2.0207 13 7 6.1715 -2.6580 -3.1396 14 6 7.4222 -3.1419 -3.0041 15 8 8.0175 -3.0019 -1.9532 16 7 8.0127 -3.7809 -4.0333 17 6 9.3722 -4.3064 -3.8861 18 1 9.8958 -4.0078 -2.9779 19 6 10.2058 -4.4751 -5.1586 20 1 11.2679 -4.2309 -5.1392 21 6 9.5012 -4.4668 -6.5217 22 6 8.5701 -5.6549 -6.5456 23 6 7.7079 -6.0860 -7.5440 24 6 6.9344 -7.2137 -7.3572 25 6 7.0187 -7.9180 -6.1705 26 6 7.8764 -7.4912 -5.1770 27 6 8.6409 -6.3464 -5.3554 28 6 9.6505 -5.7075 -4.4330 29 1 10.3119 -6.3747 -3.8803 30 6 4.8753 -2.9896 -1.0922 31 6 4.2351 -2.2629 0.0947 32 1 -0.4851 0.8400 0.0004 33 1 4.5598 0.3806 -0.9098 34 1 2.9910 0.3503 -1.7555 35 1 4.9254 -0.2916 -3.2382 36 1 3.7006 -1.5753 -3.0921 37 1 6.2783 -1.3981 -1.4665 38 1 5.6966 -2.7694 -3.9780 39 1 7.5375 -3.8929 -4.8715 40 1 8.9308 -3.5455 -6.6393 41 1 10.2376 -4.5520 -7.3209 42 1 7.6420 -5.5367 -8.4714 43 1 6.2651 -7.5459 -8.1370 44 1 6.4151 -8.8010 -6.0214 45 1 7.9414 -8.0416 -4.2500 46 1 4.1089 -3.5388 -1.6391 47 1 5.6315 -3.6850 -0.7278 48 1 5.0114 -1.7876 0.6943 49 1 3.6839 -2.9772 0.7064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610788258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:58 Heat of formation + Delta-G solvation = 53.551932 kcal Electronic energy + Delta-G solvation = -29423.011775 eV Core-core repulsion = 25544.254711 eV Total energy + Delta-G solvation = -3878.757064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.39390 -39.81005 -37.97206 -37.28996 -34.50266 -33.60097 -32.18155 -31.79088 -30.64696 -30.38230 -29.68504 -28.04080 -25.04873 -23.73176 -22.94746 -22.38368 -21.83182 -21.03160 -20.72306 -20.20154 -19.64799 -18.47253 -16.96202 -16.80796 -16.25197 -15.83146 -15.54832 -15.17766 -15.06228 -14.92012 -14.40669 -14.13028 -13.97807 -13.84094 -13.76338 -13.32861 -13.21486 -12.92707 -12.92208 -12.82429 -12.37549 -12.13295 -11.96751 -11.76947 -11.65354 -11.46435 -11.15844 -10.95948 -10.80094 -10.52474 -10.49355 -10.25730 -10.21996 -10.01648 -9.74312 -9.45426 -9.32458 -9.09210 -8.81754 -8.62171 -8.48991 -6.97543 -5.93951 -3.29564 0.97157 1.03383 2.61097 2.97307 3.32108 3.36602 3.49997 3.53698 3.55010 4.03621 4.14825 4.18017 4.47576 4.50310 4.53973 4.70896 4.74660 4.78221 4.97760 5.06777 5.15600 5.19388 5.20604 5.36080 5.37674 5.43230 5.43961 5.48628 5.55478 5.68144 5.70902 5.82594 5.85663 6.06834 6.10162 6.14307 6.18889 6.19167 6.26423 6.33658 6.40091 6.45679 6.59515 6.64969 6.67697 6.68142 6.78197 6.89159 7.04784 7.97460 8.03130 8.34161 8.64589 8.95244 9.73093 10.11008 11.22110 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.002392 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.377654 B =11701.372858 C =12227.993692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.130 3.870 11 C -0.140 4.140 12 C 0.169 3.831 13 N -0.738 5.738 14 C 0.707 3.293 15 O -0.589 6.589 16 N -0.720 5.720 17 C 0.153 3.847 18 H 0.151 0.849 19 C -0.170 4.170 20 H 0.129 0.871 21 C -0.055 4.055 22 C -0.104 4.104 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.101 4.101 27 C -0.059 4.059 28 C -0.143 4.143 29 H 0.123 0.877 30 C -0.142 4.142 31 C 0.151 3.849 32 H 0.262 0.738 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.392 0.608 39 H 0.396 0.604 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.026 0.974 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.338 -13.076 -17.259 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.065 3.935 13 N -0.391 5.391 14 C 0.407 3.593 15 O -0.467 6.467 16 N -0.373 5.373 17 C 0.045 3.955 18 H 0.169 0.831 19 C -0.189 4.189 20 H 0.146 0.854 21 C -0.092 4.092 22 C -0.104 4.104 23 C -0.125 4.125 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.119 4.119 27 C -0.059 4.059 28 C -0.163 4.163 29 H 0.140 0.860 30 C -0.182 4.182 31 C 0.024 3.976 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.225 0.775 39 H 0.231 0.769 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 20.685 -12.824 -16.224 29.250 hybrid contribution -0.060 0.627 -0.971 1.157 sum 20.625 -12.197 -17.195 29.493 Atomic orbital electron populations 1.69836 1.05732 1.26534 1.53135 1.25285 0.95237 0.97569 0.99570 0.86970 0.80156 0.84671 0.77008 1.21640 1.23152 1.19436 1.18938 0.84929 0.94784 1.40000 0.89643 1.44413 1.08706 1.33341 1.46563 1.21305 0.97264 0.92035 0.89055 1.22356 0.97485 0.98404 0.99779 1.20867 0.93929 0.92640 0.86038 1.45467 1.14458 1.61495 1.17669 1.15920 0.81569 0.78231 0.83544 1.90913 1.64763 1.63746 1.27234 1.44513 1.15875 1.61058 1.15809 1.21574 0.83393 0.93134 0.97350 0.83129 1.23562 1.00416 1.03053 0.91886 0.85351 1.20222 0.96954 0.95917 0.96128 1.20505 0.98260 0.97085 0.94514 1.20650 0.96257 0.97095 0.98524 1.21051 0.99384 0.95536 0.97737 1.21070 0.98653 1.00183 0.93694 1.20737 0.96092 0.95748 0.99281 1.19624 0.96763 0.95191 0.94293 1.22206 1.00285 0.91182 1.02660 0.85954 1.22400 0.99361 0.98094 0.98337 1.20903 0.92289 0.91296 0.93062 0.92788 0.95430 0.90518 0.92276 0.91208 0.89869 0.77484 0.76912 0.90015 0.89539 0.86135 0.85775 0.85754 0.86138 0.91986 0.92208 0.95642 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.97 55.49 0.78 -27.11 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 22.38 24.34 -169.99 -4.14 18.25 16 4 H -0.29 -7.00 6.62 56.52 0.37 -6.63 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.61 -14.48 2.77 -172.32 -0.48 -14.96 16 10 C 0.13 2.81 4.20 -3.71 -0.02 2.79 16 11 C -0.14 -2.40 5.55 -26.61 -0.15 -2.55 16 12 C 0.17 2.80 2.42 -67.89 -0.16 2.64 16 13 N -0.74 -10.05 5.08 -58.64 -0.30 -10.35 16 14 C 0.71 10.21 8.53 -86.92 -0.74 9.47 16 15 O -0.59 -10.74 15.57 5.29 0.08 -10.65 16 16 N -0.72 -7.82 5.16 -58.67 -0.30 -8.12 16 17 C 0.15 1.47 6.38 -67.93 -0.43 1.03 16 18 H 0.15 1.57 7.40 -51.93 -0.38 1.19 16 19 C -0.17 -1.20 7.08 -90.15 -0.64 -1.84 16 20 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 21 C -0.06 -0.37 5.93 -27.53 -0.16 -0.53 16 22 C -0.10 -0.84 5.38 -104.44 -0.56 -1.40 16 23 C -0.11 -0.81 10.04 -39.46 -0.40 -1.21 16 24 C -0.12 -0.90 10.05 -39.66 -0.40 -1.30 16 25 C -0.12 -0.95 10.05 -39.66 -0.40 -1.35 16 26 C -0.10 -0.90 10.04 -39.45 -0.40 -1.30 16 27 C -0.06 -0.53 5.42 -104.44 -0.57 -1.09 16 28 C -0.14 -1.20 6.87 -91.46 -0.63 -1.83 16 29 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 30 C -0.14 -2.50 5.65 -26.61 -0.15 -2.66 16 31 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 34 H 0.08 1.80 4.49 -51.93 -0.23 1.57 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 38 H 0.39 4.35 8.62 -40.82 -0.35 4.00 16 39 H 0.40 3.72 6.91 -40.82 -0.28 3.44 16 40 H 0.08 0.53 7.91 -51.93 -0.41 0.11 16 41 H 0.09 0.48 8.14 -51.92 -0.42 0.05 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 384.24 15.07 5.79 5.79 Total: -1.00 -33.45 384.24 -12.15 -45.60 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.52 Total: 6.44 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -6.06 Total: -4.89 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.30 Total: -60.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.45 -12.15 -45.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610788258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.156 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds