Wall clock time and date at job start Wed Apr 1 2020 00:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47362 * 352.75646 * 3 2 1 5 5 H 1.09001 * 109.47044 * 305.05831 * 4 3 2 6 6 C 1.53009 * 109.47361 * 65.05230 * 4 3 2 7 7 C 1.50702 * 109.47156 * 186.85275 * 6 4 3 8 8 O 1.21279 * 120.00004 * 6.33614 * 7 6 4 9 9 N 1.34772 * 119.99822 * 186.33424 * 7 6 4 10 10 C 1.46497 * 120.00048 * 179.97438 * 9 7 6 11 11 C 1.53343 * 109.42034 * 275.13257 * 10 9 7 12 12 C 1.53201 * 109.15008 * 178.67475 * 11 10 9 13 13 N 1.46927 * 108.89265 * 54.57364 * 12 11 10 14 14 C 1.36933 * 120.62821 * 126.34551 * 13 12 11 15 15 H 1.08007 * 119.99990 * 330.26253 * 14 13 12 16 16 C 1.38815 * 120.00331 * 150.26117 * 14 13 12 17 17 N 1.31621 * 119.99370 * 343.03794 * 16 14 13 18 18 Si 1.86799 * 120.00300 * 163.03222 * 16 14 13 19 19 H 1.48499 * 109.46806 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46748 * 120.00011 * 18 16 14 21 21 H 1.48500 * 109.47241 * 240.00193 * 18 16 14 22 22 C 1.46924 * 118.73978 * 306.32528 * 13 12 11 23 23 C 1.53046 * 109.46138 * 155.00154 * 10 9 7 24 24 C 1.50700 * 109.47513 * 185.05554 * 4 3 2 25 25 C 1.38233 * 119.99601 * 299.72537 * 24 4 3 26 26 C 1.38237 * 119.99597 * 179.81079 * 25 24 4 27 27 C 1.38237 * 120.00405 * 0.39291 * 26 25 24 28 28 C 1.38242 * 119.99390 * 359.86243 * 27 26 25 29 29 C 1.38234 * 120.00360 * 359.95172 * 28 27 26 30 30 H 1.08996 * 109.47305 * 232.75334 * 3 2 1 31 31 H 1.09010 * 109.47079 * 112.75301 * 3 2 1 32 32 H 1.08995 * 109.46486 * 66.85314 * 6 4 3 33 33 H 1.08998 * 109.46569 * 306.85258 * 6 4 3 34 34 H 0.97001 * 119.99769 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.45686 * 35.03068 * 10 9 7 36 36 H 1.09001 * 109.68526 * 58.70898 * 11 10 9 37 37 H 1.08999 * 109.47410 * 298.50837 * 11 10 9 38 38 H 1.09007 * 109.58137 * 294.71783 * 12 11 10 39 39 H 1.08996 * 109.58857 * 174.43472 * 12 11 10 40 40 H 0.96998 * 119.99453 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.58811 * 173.39617 * 22 13 12 42 42 H 1.09007 * 109.58354 * 293.67753 * 22 13 12 43 43 H 1.08997 * 109.49432 * 61.43391 * 23 10 9 44 44 H 1.09007 * 109.49535 * 301.34042 * 23 10 9 45 45 H 1.08004 * 120.00423 * 359.97438 * 25 24 4 46 46 H 1.08006 * 119.99751 * 180.23075 * 26 25 24 47 47 H 1.07995 * 120.00337 * 179.83533 * 27 26 25 48 48 H 1.08000 * 119.99473 * 179.97438 * 28 27 26 49 49 H 1.07996 * 119.99848 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.4301 0.1819 5 1 2.6834 -1.8592 1.0844 6 6 2.7154 -2.2734 -1.0294 7 6 3.0690 -3.7165 -0.7770 8 8 3.4851 -4.0576 0.3099 9 7 2.9228 -4.6278 -1.7590 10 6 3.2670 -6.0305 -1.5138 11 6 4.7693 -6.2346 -1.7442 12 6 5.1283 -7.6954 -1.4541 13 7 4.2677 -8.5670 -2.2656 14 6 4.8130 -9.5242 -3.0788 15 1 5.7906 -9.3719 -3.5120 16 6 4.1094 -10.6905 -3.3466 17 7 3.0953 -11.0372 -2.5826 18 14 4.6018 -11.7677 -4.7911 19 1 5.7652 -11.1613 -5.4868 20 1 4.9699 -13.1192 -4.2978 21 1 3.4621 -11.8793 -5.7365 22 6 2.8110 -8.3922 -2.1876 23 6 2.4746 -6.9247 -2.4702 24 6 4.6204 -1.4155 0.3063 25 6 5.3946 -0.9182 -0.7253 26 6 6.7720 -0.9012 -0.6096 27 6 7.3756 -1.3889 0.5344 28 6 6.6015 -1.8911 1.5639 29 6 5.2240 -1.9045 1.4497 30 1 2.9710 0.6228 0.8180 31 1 2.9711 0.3983 -0.9478 32 1 3.2467 -1.9183 -1.9124 33 1 1.6412 -2.1856 -1.1918 34 1 2.5903 -4.3548 -2.6284 35 1 3.0196 -6.2905 -0.4846 36 1 5.3348 -5.5820 -1.0790 37 1 5.0134 -5.9988 -2.7800 38 1 4.9699 -7.9075 -0.3967 39 1 6.1729 -7.8727 -1.7099 40 1 2.6034 -11.8520 -2.7699 41 1 2.3265 -9.0275 -2.9291 42 1 2.4633 -8.6636 -1.1907 43 1 2.7402 -6.6822 -3.4991 44 1 1.4073 -6.7609 -2.3211 45 1 4.9232 -0.5405 -1.6207 46 1 7.3767 -0.5092 -1.4141 47 1 8.4518 -1.3781 0.6237 48 1 7.0731 -2.2725 2.4574 49 1 4.6193 -2.2965 2.2542 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619435383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:29 Heat of formation + Delta-G solvation = 22.475635 kcal Electronic energy + Delta-G solvation = -29455.695918 eV Core-core repulsion = 25575.591285 eV Total energy + Delta-G solvation = -3880.104633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.37811 -39.13820 -37.52982 -37.08983 -35.08517 -34.33887 -32.17695 -31.00889 -30.35362 -30.10983 -29.71512 -28.54685 -25.09129 -24.03851 -22.71876 -22.31060 -21.98167 -20.81601 -20.02612 -19.23177 -17.97072 -17.28450 -16.93559 -16.52793 -16.03376 -15.59760 -15.10105 -14.94542 -14.77415 -14.69228 -14.22943 -13.79166 -13.70943 -13.55014 -13.48879 -13.37360 -13.12837 -12.91639 -12.71041 -12.57248 -12.51950 -12.37480 -12.08128 -11.75951 -11.53853 -11.44878 -11.14892 -11.02855 -10.92656 -10.85373 -10.74379 -10.47723 -10.26960 -10.04635 -9.86131 -9.68993 -9.44291 -8.98770 -8.82990 -8.66880 -8.46509 -6.66914 -5.80659 -3.24008 1.21431 1.34048 2.42942 2.46636 2.81389 3.33533 3.37172 3.43990 3.46224 3.56745 3.68338 4.37213 4.48664 4.50185 4.53603 4.81173 4.87500 4.90661 5.00513 5.03973 5.12611 5.25295 5.31238 5.34957 5.37841 5.45394 5.51548 5.52602 5.60337 5.71483 5.88168 5.88973 5.96438 6.07861 6.28059 6.34190 6.35124 6.44037 6.51821 6.52339 6.57052 6.59928 6.80446 6.90147 6.93452 6.99849 7.23558 7.29760 7.57175 7.74189 7.80211 8.42608 8.44835 9.20051 9.83023 10.41217 11.28322 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014494 B = 0.002591 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.397754 B =10805.246750 C =12079.807462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.204 3.796 3 C -0.021 4.021 4 C -0.027 4.027 5 H 0.099 0.901 6 C -0.142 4.142 7 C 0.511 3.489 8 O -0.534 6.534 9 N -0.726 5.726 10 C 0.152 3.848 11 C -0.136 4.136 12 C 0.148 3.852 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.065 0.935 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.176 3.824 23 C -0.147 4.147 24 C -0.073 4.073 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.121 4.121 29 C -0.083 4.083 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.394 0.606 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.019 0.981 39 H 0.055 0.945 40 H 0.253 0.747 41 H 0.087 0.913 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 24.875 3.818 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.113 4.113 3 C -0.061 4.061 4 C -0.047 4.047 5 H 0.117 0.883 6 C -0.182 4.182 7 C 0.296 3.704 8 O -0.410 6.410 9 N -0.376 5.376 10 C 0.049 3.951 11 C -0.176 4.176 12 C 0.021 3.979 13 N -0.315 5.315 14 C -0.383 4.383 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.202 1.202 20 H -0.217 1.217 21 H -0.216 1.216 22 C 0.049 3.951 23 C -0.186 4.186 24 C -0.073 4.073 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.139 4.139 28 C -0.139 4.139 29 C -0.101 4.101 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.227 0.773 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.908 24.458 4.596 24.959 hybrid contribution 0.487 -0.597 -1.268 1.484 sum 2.395 23.861 3.327 24.211 Atomic orbital electron populations 1.81276 1.12991 1.08105 1.08670 1.29172 0.95266 0.93493 0.93398 1.19446 0.81526 0.98923 1.06196 1.19871 0.92646 0.92349 0.99867 0.88264 1.21884 1.03195 0.93369 0.99770 1.20369 0.77977 0.87332 0.84694 1.90698 1.45160 1.81064 1.24115 1.46347 1.66869 1.09467 1.14896 1.21065 0.95257 0.78344 1.00430 1.22396 0.95030 0.99384 1.00840 1.20870 0.94882 0.88180 0.93997 1.44074 1.00880 1.37962 1.48586 1.19207 1.03118 0.95245 1.20689 0.91710 1.25097 0.99159 0.96333 0.98982 1.70045 1.23061 1.24404 1.37066 0.86242 0.77892 0.80283 0.82470 1.20235 1.21699 1.21565 1.20689 0.84823 0.89425 1.00114 1.22524 0.97889 0.99683 0.98552 1.19449 0.93597 0.99490 0.94772 1.20943 0.93870 1.00580 0.98255 1.21063 0.94713 1.00448 0.97869 1.21150 0.99746 0.98923 0.94048 1.21163 0.94007 0.99636 0.99083 1.21030 0.94580 0.96979 0.97497 0.86633 0.87026 0.88505 0.88932 0.77265 0.90156 0.92723 0.92515 0.96291 0.92673 0.93659 0.89462 0.96088 0.92223 0.92835 0.86226 0.86315 0.86421 0.86237 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -4.97 18.54 42.15 0.78 -4.19 16 2 C 0.20 1.62 14.30 -20.76 -0.30 1.33 16 3 C -0.02 -0.09 4.93 -29.52 -0.15 -0.24 16 4 C -0.03 -0.20 1.66 -91.77 -0.15 -0.35 16 5 H 0.10 0.88 7.52 -51.93 -0.39 0.49 16 6 C -0.14 -1.16 4.99 -27.88 -0.14 -1.30 16 7 C 0.51 6.56 7.48 -10.99 -0.08 6.47 16 8 O -0.53 -8.67 14.22 5.56 0.08 -8.60 16 9 N -0.73 -9.57 5.08 -53.61 -0.27 -9.84 16 10 C 0.15 2.60 2.42 -67.73 -0.16 2.43 16 11 C -0.14 -2.46 5.68 -26.45 -0.15 -2.61 16 12 C 0.15 3.18 6.50 -3.71 -0.02 3.16 16 13 N -0.59 -14.78 2.99 -172.31 -0.51 -15.29 16 14 C -0.25 -6.90 9.56 -15.06 -0.14 -7.05 16 15 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 16 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 17 N -0.90 -26.06 11.32 55.49 0.63 -25.43 16 18 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C 0.18 4.12 5.29 -3.71 -0.02 4.10 16 23 C -0.15 -2.66 5.55 -26.61 -0.15 -2.81 16 24 C -0.07 -0.62 3.90 -104.62 -0.41 -1.03 16 25 C -0.12 -0.90 8.68 -39.58 -0.34 -1.25 16 26 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 27 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 28 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 29 C -0.08 -0.83 8.89 -39.58 -0.35 -1.18 16 30 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.11 0.24 7.59 -51.92 -0.39 -0.15 16 32 H 0.10 0.58 7.15 -51.93 -0.37 0.21 16 33 H 0.09 0.71 7.18 -51.93 -0.37 0.34 16 34 H 0.39 4.16 8.60 -40.82 -0.35 3.81 16 35 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.09 2.27 6.19 -51.93 -0.32 1.95 16 42 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.12 0.61 7.13 -52.48 -0.37 0.24 16 46 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 49 H 0.12 1.24 7.95 -52.49 -0.42 0.82 16 LS Contribution 400.13 15.07 6.03 6.03 Total: -1.00 -33.77 400.13 -9.72 -43.49 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.58 Total: 2.10 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.85 Total: -4.76 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.62 Total: -54.75 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.08 Total: -8.60 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.77 -9.72 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619435383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.969 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds