Wall clock time and date at job start Wed Apr 1 2020 00:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00191 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47024 * 299.99912 * 3 2 1 6 6 H 1.48500 * 109.47647 * 59.99844 * 3 2 1 7 7 C 1.37880 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00078 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00426 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99630 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00405 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.47255 * 180.02562 * 13 11 10 15 15 C 1.46852 * 110.99844 * 170.00199 * 14 13 11 16 16 C 1.53033 * 109.51931 * 185.84135 * 15 14 13 17 17 C 1.53119 * 109.28064 * 300.82027 * 16 15 14 18 18 C 1.50697 * 109.52438 * 177.56371 * 17 16 15 19 19 C 1.34237 * 126.49946 * 300.10461 * 18 17 16 20 20 N 1.36834 * 109.92814 * 180.08548 * 19 18 17 21 21 H 0.96999 * 125.05958 * 179.91508 * 20 19 18 22 22 C 1.37683 * 109.87605 * 359.94855 * 20 19 18 23 23 C 1.39123 * 133.50787 * 180.02562 * 22 20 19 24 24 C 1.37755 * 119.77684 * 179.97438 * 23 22 20 25 25 C 1.38828 * 120.66495 * 0.02562 * 24 23 22 26 26 C 1.36623 * 120.53158 * 359.97438 * 25 24 23 27 27 C 1.39632 * 119.76205 * 359.97438 * 26 25 24 28 28 C 1.53114 * 109.21398 * 57.62368 * 17 16 15 29 29 C 1.46843 * 110.99964 * 294.21256 * 14 13 11 30 30 H 0.97002 * 119.99469 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47592 * 59.99677 * 9 7 2 32 32 H 1.09003 * 109.47240 * 299.98919 * 9 7 2 33 33 H 0.97001 * 119.99654 * 359.97438 * 10 9 7 34 34 H 1.09006 * 109.46698 * 60.00507 * 13 11 10 35 35 H 1.09000 * 109.47168 * 300.00889 * 13 11 10 36 36 H 1.08992 * 109.45877 * 65.82574 * 15 14 13 37 37 H 1.08999 * 109.45244 * 305.85116 * 15 14 13 38 38 H 1.09000 * 109.49993 * 180.88260 * 16 15 14 39 39 H 1.08997 * 109.54101 * 60.78540 * 16 15 14 40 40 H 1.09006 * 109.52005 * 297.68707 * 17 16 15 41 41 H 1.07997 * 125.03956 * 0.04834 * 19 18 17 42 42 H 1.07996 * 120.11326 * 0.21453 * 23 22 20 43 43 H 1.08001 * 119.66157 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.73306 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.11958 * 179.97438 * 26 25 24 46 46 H 1.09008 * 109.50137 * 62.31836 * 28 17 16 47 47 H 1.08998 * 109.50454 * 182.43765 * 28 17 16 48 48 H 1.08996 * 109.46397 * 294.17730 * 29 14 13 49 49 H 1.09006 * 109.46316 * 54.15714 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7329 -6.0289 0.0005 14 7 1.9983 -7.3011 0.0006 15 6 2.9043 -8.4319 -0.2380 16 6 2.0893 -9.7198 -0.3760 17 6 1.2842 -9.9484 0.9062 18 6 0.4338 -11.1831 0.7534 19 6 -0.5176 -11.3880 -0.1711 20 7 -1.0779 -12.6243 0.0022 21 1 -1.7875 -12.9961 -0.5446 22 6 -0.4848 -13.2616 1.0689 23 6 -0.6683 -14.5057 1.6639 24 6 0.1017 -14.8658 2.7479 25 6 1.0605 -13.9991 3.2546 26 6 1.2574 -12.7726 2.6857 27 6 0.4888 -12.3875 1.5854 28 6 0.3845 -8.7355 1.1592 29 6 1.2488 -7.4758 1.2512 30 1 -0.4849 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 3.1566 -3.4355 0.0002 34 1 3.3602 -5.9711 0.8901 35 1 3.3590 -5.9712 -0.8899 36 1 3.5948 -8.5270 0.6000 37 1 3.4677 -8.2585 -1.1549 38 1 2.7632 -10.5612 -0.5375 39 1 1.4084 -9.6313 -1.2225 40 1 1.9663 -10.0776 1.7465 41 1 -0.7996 -10.6815 -0.9378 42 1 -1.4093 -15.1883 1.2749 43 1 -0.0427 -15.8319 3.2087 44 1 1.6555 -14.2967 4.1054 45 1 2.0048 -12.1035 3.0855 46 1 -0.3242 -8.6304 0.3376 47 1 -0.1589 -8.8742 2.0938 48 1 1.9471 -7.5755 2.0822 49 1 0.6097 -6.6083 1.4158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822081214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:54 Heat of formation + Delta-G solvation = 14.856714 kcal Electronic energy + Delta-G solvation = -28474.590130 eV Core-core repulsion = 24594.155115 eV Total energy + Delta-G solvation = -3880.435014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52827 -39.47493 -38.02089 -37.05815 -34.45186 -33.97753 -32.30988 -31.58512 -30.74188 -29.62843 -29.11951 -27.80212 -26.15323 -23.59940 -23.05321 -23.04604 -22.21758 -21.97551 -20.24494 -19.59180 -18.94658 -18.07418 -17.04780 -16.52932 -15.99981 -15.68717 -15.59022 -15.20100 -14.89039 -14.70389 -14.37384 -14.30770 -14.16065 -14.04616 -13.82060 -13.56072 -13.31701 -13.13513 -12.63581 -12.54488 -12.25898 -12.01126 -11.90937 -11.85515 -11.78588 -11.36524 -11.25805 -11.13088 -10.93542 -10.89517 -10.75720 -10.53246 -10.30616 -10.26143 -9.69935 -9.36150 -8.92709 -8.71768 -8.42428 -8.11807 -7.82575 -7.79573 -6.15678 -4.22298 0.91933 1.41915 2.50588 2.92245 3.23946 3.31012 3.34026 3.44078 3.70407 3.75463 4.28768 4.46126 4.49724 4.52978 4.71904 4.83629 4.95556 4.97524 5.02235 5.18547 5.20464 5.23245 5.28743 5.38459 5.43153 5.46644 5.55956 5.58279 5.62014 5.64982 5.67153 5.73410 5.82370 5.92534 6.00624 6.03562 6.18295 6.25750 6.33660 6.39764 6.44482 6.54065 6.63986 6.96028 7.10306 7.25999 7.31659 7.36332 7.49325 7.54781 7.70256 7.99020 8.67568 8.81655 9.17232 9.44723 10.94554 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030361 B = 0.001718 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.000185 B =16296.091804 C =16475.806217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.716 5.716 11 C 0.498 3.502 12 O -0.538 6.538 13 C 0.036 3.964 14 N -0.518 5.518 15 C 0.055 3.945 16 C -0.103 4.103 17 C -0.013 4.013 18 C -0.156 4.156 19 C 0.055 3.945 20 N -0.596 5.596 21 H 0.415 0.585 22 C 0.094 3.906 23 C -0.132 4.132 24 C -0.102 4.102 25 C -0.150 4.150 26 C -0.069 4.069 27 C -0.101 4.101 28 C -0.102 4.102 29 C 0.050 3.950 30 H 0.265 0.735 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.389 0.611 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.031 0.969 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.171 0.829 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.024 0.976 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 -29.474 2.284 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.365 5.365 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.096 4.096 14 N -0.243 5.243 15 C -0.073 4.073 16 C -0.141 4.141 17 C -0.033 4.033 18 C -0.162 4.162 19 C -0.070 4.070 20 N -0.199 5.199 21 H 0.251 0.749 22 C -0.013 4.013 23 C -0.153 4.153 24 C -0.122 4.122 25 C -0.170 4.170 26 C -0.087 4.087 27 C -0.106 4.106 28 C -0.139 4.139 29 C -0.077 4.077 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.221 0.779 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.188 0.812 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.042 0.958 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.113 -29.483 1.802 29.614 hybrid contribution 1.103 0.847 0.347 1.433 sum 3.216 -28.636 2.150 28.896 Atomic orbital electron populations 1.69991 1.06097 1.27142 1.49050 1.24959 0.94913 0.99453 0.94751 0.86366 0.79826 0.83003 0.77732 1.19651 1.20815 1.20824 1.21280 0.93302 0.90512 1.52988 0.91873 1.19073 0.88295 0.81935 0.97659 1.46459 1.11026 1.06143 1.72896 1.20320 0.89606 0.84062 0.77764 1.90622 1.16675 1.84516 1.49820 1.21993 0.95424 0.89745 1.02419 1.61561 1.26216 1.00201 1.36320 1.22121 0.93881 0.90801 1.00467 1.21623 0.98793 0.95901 0.97814 1.19573 0.95237 0.90460 0.98001 1.20217 1.01907 0.95695 0.98425 1.21648 0.96819 0.87176 1.01406 1.41747 1.34931 1.14995 1.28221 0.74883 1.18267 0.96747 0.94978 0.91353 1.20009 1.02752 0.94044 0.98507 1.20778 0.95957 0.99498 0.95920 1.20610 1.00260 0.94643 1.01458 1.20285 0.98160 0.96117 0.94176 1.19142 0.98746 0.94555 0.98141 1.21609 0.97760 0.92387 1.02192 1.22291 0.96858 0.99973 0.88606 0.92535 0.95570 0.95651 0.77871 0.92610 0.88457 0.95111 0.90761 0.91668 0.91013 0.91123 0.81222 0.86503 0.85990 0.86213 0.86228 0.90917 0.91707 0.95813 0.88237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 10 N -0.72 -14.96 5.55 -61.47 -0.34 -15.30 16 11 C 0.50 9.84 7.50 -10.99 -0.08 9.76 16 12 O -0.54 -12.74 14.33 5.55 0.08 -12.66 16 13 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 14 N -0.52 -7.28 4.40 -236.11 -1.04 -8.32 16 15 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 16 C -0.10 -1.03 5.28 -26.65 -0.14 -1.17 16 17 C -0.01 -0.14 2.65 -91.65 -0.24 -0.38 16 18 C -0.16 -1.64 5.06 -102.71 -0.52 -2.16 16 19 C 0.06 0.51 11.08 -16.73 -0.19 0.32 16 20 N -0.60 -4.91 6.07 -10.65 -0.06 -4.97 16 21 H 0.41 2.16 8.96 -40.82 -0.37 1.80 16 22 C 0.09 0.94 7.28 -83.99 -0.61 0.33 16 23 C -0.13 -1.13 10.08 -39.43 -0.40 -1.53 16 24 C -0.10 -0.83 10.01 -39.54 -0.40 -1.22 16 25 C -0.15 -1.29 9.97 -39.95 -0.40 -1.69 16 26 C -0.07 -0.68 10.05 -39.64 -0.40 -1.08 16 27 C -0.10 -1.11 6.35 -105.14 -0.67 -1.78 16 28 C -0.10 -1.24 5.28 -26.65 -0.14 -1.38 16 29 C 0.05 0.71 5.10 -3.83 -0.02 0.69 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 34 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.10 1.20 7.99 -51.93 -0.41 0.78 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.73 8.01 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.75 7.96 -51.93 -0.41 0.33 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.07 0.95 7.96 -51.92 -0.41 0.54 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.10 1.76 5.78 -51.93 -0.30 1.46 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -33.64 397.55 -12.04 -45.68 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.69 Total: 6.16 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -4.69 Total: -7.01 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.71 Total: -53.99 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.66 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.64 -12.04 -45.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822081214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.535 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds