Wall clock time and date at job start Wed Apr 1 2020 00:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00191 * 2 1 4 4 H 1.48504 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47024 * 299.99912 * 3 2 1 6 6 H 1.48500 * 109.47647 * 59.99844 * 3 2 1 7 7 C 1.37880 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00078 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00426 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99630 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00405 * 179.97438 * 11 10 9 14 14 N 1.46900 * 109.47255 * 180.02562 * 13 11 10 15 15 C 1.46852 * 110.99844 * 170.00199 * 14 13 11 16 16 C 1.53033 * 109.51931 * 185.84135 * 15 14 13 17 17 C 1.53119 * 109.28064 * 300.82027 * 16 15 14 18 18 C 1.50697 * 109.52438 * 177.56371 * 17 16 15 19 19 C 1.34237 * 126.49946 * 300.10461 * 18 17 16 20 20 N 1.36834 * 109.92814 * 180.08548 * 19 18 17 21 21 H 0.96999 * 125.05958 * 179.91508 * 20 19 18 22 22 C 1.37683 * 109.87605 * 359.94855 * 20 19 18 23 23 C 1.39123 * 133.50787 * 180.02562 * 22 20 19 24 24 C 1.37755 * 119.77684 * 179.97438 * 23 22 20 25 25 C 1.38828 * 120.66495 * 0.02562 * 24 23 22 26 26 C 1.36623 * 120.53158 * 359.97438 * 25 24 23 27 27 C 1.39632 * 119.76205 * 359.97438 * 26 25 24 28 28 C 1.53114 * 109.21398 * 57.62368 * 17 16 15 29 29 C 1.46843 * 110.99964 * 294.21256 * 14 13 11 30 30 H 0.97002 * 119.99469 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.47592 * 59.99677 * 9 7 2 32 32 H 1.09003 * 109.47240 * 299.98919 * 9 7 2 33 33 H 0.97001 * 119.99654 * 359.97438 * 10 9 7 34 34 H 1.09006 * 109.46698 * 60.00507 * 13 11 10 35 35 H 1.09000 * 109.47168 * 300.00889 * 13 11 10 36 36 H 1.08992 * 109.45877 * 65.82574 * 15 14 13 37 37 H 1.08999 * 109.45244 * 305.85116 * 15 14 13 38 38 H 1.09000 * 109.49993 * 180.88260 * 16 15 14 39 39 H 1.08997 * 109.54101 * 60.78540 * 16 15 14 40 40 H 1.09006 * 109.52005 * 297.68707 * 17 16 15 41 41 H 1.07997 * 125.03956 * 0.04834 * 19 18 17 42 42 H 1.07996 * 120.11326 * 0.21453 * 23 22 20 43 43 H 1.08001 * 119.66157 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.73306 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.11958 * 179.97438 * 26 25 24 46 46 H 1.09008 * 109.50137 * 62.31836 * 28 17 16 47 47 H 1.08998 * 109.50454 * 182.43765 * 28 17 16 48 48 H 1.08996 * 109.46397 * 294.17730 * 29 14 13 49 49 H 1.09006 * 109.46316 * 54.15714 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5612 -5.1049 0.0011 13 6 2.7329 -6.0289 0.0005 14 7 1.9983 -7.3011 0.0006 15 6 2.9043 -8.4319 -0.2380 16 6 2.0893 -9.7198 -0.3760 17 6 1.2842 -9.9484 0.9062 18 6 0.4338 -11.1831 0.7534 19 6 -0.5176 -11.3880 -0.1711 20 7 -1.0779 -12.6243 0.0022 21 1 -1.7875 -12.9961 -0.5446 22 6 -0.4848 -13.2616 1.0689 23 6 -0.6683 -14.5057 1.6639 24 6 0.1017 -14.8658 2.7479 25 6 1.0605 -13.9991 3.2546 26 6 1.2574 -12.7726 2.6857 27 6 0.4888 -12.3875 1.5854 28 6 0.3845 -8.7355 1.1592 29 6 1.2488 -7.4758 1.2512 30 1 -0.4849 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6241 -2.5567 0.8904 33 1 3.1566 -3.4355 0.0002 34 1 3.3602 -5.9711 0.8901 35 1 3.3590 -5.9712 -0.8899 36 1 3.5948 -8.5270 0.6000 37 1 3.4677 -8.2585 -1.1549 38 1 2.7632 -10.5612 -0.5375 39 1 1.4084 -9.6313 -1.2225 40 1 1.9663 -10.0776 1.7465 41 1 -0.7996 -10.6815 -0.9378 42 1 -1.4093 -15.1883 1.2749 43 1 -0.0427 -15.8319 3.2087 44 1 1.6555 -14.2967 4.1054 45 1 2.0048 -12.1035 3.0855 46 1 -0.3242 -8.6304 0.3376 47 1 -0.1589 -8.8742 2.0938 48 1 1.9471 -7.5755 2.0822 49 1 0.6097 -6.6083 1.4158 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822081214.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:53 Heat of formation + Delta-G solvation = -7.225495 kcal Electronic energy + Delta-G solvation = -28475.547686 eV Core-core repulsion = 24594.155115 eV Total energy + Delta-G solvation = -3881.392571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21133 -40.82488 -39.29344 -37.73104 -36.11731 -35.22616 -34.31435 -32.36386 -31.69591 -30.42185 -30.11963 -29.24780 -27.54290 -24.96752 -24.01747 -23.81784 -23.70433 -22.69259 -21.32383 -21.09728 -19.74357 -18.88650 -18.75087 -17.48004 -17.27647 -17.15813 -16.54034 -16.50430 -16.29727 -15.84995 -15.55656 -15.41518 -15.11879 -14.89538 -14.75562 -14.58734 -14.45649 -14.11990 -14.06543 -13.91237 -13.76740 -13.35651 -12.99257 -12.83861 -12.80533 -12.64985 -12.52270 -12.47993 -12.21263 -12.06257 -11.99755 -11.62633 -11.49256 -11.43630 -11.18561 -10.80063 -10.55538 -10.39596 -9.76315 -9.17615 -9.10328 -8.49690 -8.28422 -6.44834 0.25329 0.74874 1.43627 1.44751 1.58261 1.78484 1.85549 2.30017 2.30847 2.50239 3.02711 3.06511 3.12604 3.75302 3.82447 3.93967 3.99464 4.12823 4.19460 4.26772 4.31955 4.35993 4.39681 4.45067 4.49943 4.57098 4.58817 4.69403 4.76004 4.79123 4.87097 5.00417 5.04401 5.09881 5.11500 5.14540 5.22313 5.26829 5.28412 5.29805 5.51563 5.52491 5.64292 5.73985 5.74469 5.85565 5.87039 5.91053 6.06752 6.26162 6.29590 6.67255 6.74628 7.00000 7.25077 7.58546 8.83977 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030361 B = 0.001718 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.000185 B =16296.091804 C =16475.806217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.584 6.584 13 C 0.049 3.951 14 N -0.537 5.537 15 C 0.057 3.943 16 C -0.098 4.098 17 C -0.002 4.002 18 C -0.177 4.177 19 C 0.056 3.944 20 N -0.589 5.589 21 H 0.428 0.572 22 C 0.075 3.925 23 C -0.138 4.138 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.089 4.089 27 C -0.127 4.127 28 C -0.094 4.094 29 C 0.054 3.946 30 H 0.268 0.732 31 H -0.015 1.015 32 H -0.015 1.015 33 H 0.407 0.593 34 H 0.082 0.918 35 H 0.128 0.872 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.183 0.817 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.124 0.876 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.035 0.965 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.173 -30.854 2.183 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.464 6.464 13 C -0.082 4.082 14 N -0.263 5.263 15 C -0.070 4.070 16 C -0.136 4.136 17 C -0.021 4.021 18 C -0.183 4.183 19 C -0.071 4.071 20 N -0.192 5.192 21 H 0.267 0.733 22 C -0.032 4.032 23 C -0.159 4.159 24 C -0.126 4.126 25 C -0.173 4.173 26 C -0.107 4.107 27 C -0.131 4.131 28 C -0.132 4.132 29 C -0.073 4.073 30 H 0.077 0.923 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.243 0.757 34 H 0.100 0.900 35 H 0.146 0.854 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.200 0.800 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.157 0.843 45 H 0.142 0.858 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.053 0.947 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.736 -30.914 1.693 31.320 hybrid contribution 0.217 1.166 0.404 1.253 sum 4.953 -29.748 2.097 30.230 Atomic orbital electron populations 1.70155 1.08298 1.28435 1.50143 1.26084 0.95780 1.03954 0.93917 0.85102 0.79118 0.77298 0.77626 1.17559 1.20496 1.20526 1.21676 0.94352 0.90626 1.52617 0.89752 1.18483 0.88692 0.84400 0.93858 1.46195 1.11092 1.05548 1.73379 1.21405 0.90077 0.84741 0.75756 1.90611 1.19259 1.85169 1.51349 1.21933 0.93816 0.87377 1.05043 1.61514 1.27505 1.01099 1.36146 1.22217 0.93569 0.89512 1.01722 1.21588 0.98764 0.96082 0.97131 1.19418 0.94821 0.89481 0.98394 1.20257 1.02925 0.95831 0.99336 1.21876 0.96341 0.87591 1.01245 1.41746 1.34943 1.14565 1.27953 0.73336 1.18559 0.97041 0.95626 0.91974 1.20346 1.03172 0.93856 0.98508 1.21156 0.95334 1.00444 0.95651 1.20928 1.00386 0.94210 1.01767 1.20490 0.98710 0.97020 0.94490 1.19422 0.99695 0.95099 0.98915 1.21511 0.97593 0.92674 1.01410 1.22132 0.96798 0.98966 0.89437 0.92315 0.99679 0.99724 0.75702 0.89978 0.85373 0.93764 0.89111 0.90173 0.91613 0.91029 0.80037 0.84419 0.83449 0.84290 0.85777 0.92314 0.92163 0.94707 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.99 42.50 29.54 68.60 2.03 44.52 16 4 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -30.36 9.28 25.60 0.24 -30.12 16 8 H 0.08 4.16 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.91 5.43 85.63 0.46 15.37 16 10 N -0.71 -30.08 5.55 -466.79 -2.59 -32.67 16 11 C 0.49 19.77 7.50 87.66 0.66 20.43 16 12 O -0.58 -29.10 14.33 -3.04 -0.04 -29.14 16 13 C 0.05 1.32 5.45 85.56 0.47 1.78 16 14 N -0.54 -14.51 4.40 -900.92 -3.96 -18.48 16 15 C 0.06 1.08 5.46 86.32 0.47 1.55 16 16 C -0.10 -1.79 5.28 30.65 0.16 -1.63 16 17 C 0.00 -0.04 2.65 -11.46 -0.03 -0.07 16 18 C -0.18 -3.66 5.06 -18.63 -0.09 -3.76 16 19 C 0.06 1.00 11.08 83.00 0.92 1.92 16 20 N -0.59 -9.22 6.07 -187.62 -1.14 -10.36 16 21 H 0.43 4.02 8.96 -92.71 -0.83 3.19 16 22 C 0.08 1.44 7.28 39.03 0.28 1.73 16 23 C -0.14 -2.15 10.08 22.37 0.23 -1.92 16 24 C -0.11 -1.52 10.01 22.30 0.22 -1.30 16 25 C -0.15 -2.42 9.97 22.03 0.22 -2.20 16 26 C -0.09 -1.70 10.05 22.23 0.22 -1.48 16 27 C -0.13 -2.73 6.35 -20.20 -0.13 -2.86 16 28 C -0.09 -2.36 5.28 30.65 0.16 -2.20 16 29 C 0.05 1.57 5.10 86.33 0.44 2.01 16 30 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 31 H -0.01 -0.93 8.14 -2.39 -0.02 -0.94 16 32 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H 0.41 14.05 8.32 -92.71 -0.77 13.27 16 34 H 0.08 1.83 8.12 -2.38 -0.02 1.81 16 35 H 0.13 2.71 7.99 -2.39 -0.02 2.69 16 36 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 1.46 8.01 -2.39 -0.02 1.45 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.29 7.96 -2.39 -0.02 1.27 16 40 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 42 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.12 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.06 1.62 7.96 -2.38 -0.02 1.60 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.06 2.15 5.78 -2.38 -0.01 2.14 16 Total: -1.00 -76.86 397.55 -0.69 -77.55 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: -0.64 Total: 27.14 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.37 Total: -2.15 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -7.41 Total: -117.93 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.04 Total: -29.14 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -76.86 -0.69 -77.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822081214.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.323 kcal (2) G-P(sol) polarization free energy of solvation -76.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds