Wall clock time and date at job start Wed Apr 1 2020 00:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47053 * 4.98780 * 3 2 1 5 5 H 1.48501 * 109.47280 * 124.98718 * 3 2 1 6 6 H 1.48500 * 109.47315 * 244.99073 * 3 2 1 7 7 C 1.37881 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00263 * 186.69632 * 7 2 1 9 9 C 1.50704 * 119.99911 * 6.70071 * 7 2 1 10 10 C 1.52995 * 115.54854 * 274.76266 * 9 7 2 11 11 N 1.46901 * 109.47097 * 302.01159 * 10 9 7 12 12 C 1.47898 * 111.00260 * 77.42637 * 11 10 9 13 13 C 1.53995 * 107.05637 * 214.15635 * 12 11 10 14 14 C 1.54592 * 105.14087 * 1.22095 * 13 12 11 15 15 H 1.08995 * 110.72924 * 263.60155 * 14 13 12 16 16 N 1.46910 * 110.72289 * 140.49193 * 14 13 12 17 17 C 1.46637 * 110.99751 * 189.61285 * 16 14 13 18 18 C 1.50688 * 110.04922 * 285.97224 * 17 16 14 19 19 O 1.21297 * 120.27433 * 145.05408 * 18 17 16 20 20 N 1.35133 * 119.44726 * 325.08076 * 18 17 16 21 21 C 1.40299 * 118.59468 * 0.82090 * 20 18 17 22 22 C 1.38495 * 120.42676 * 198.19719 * 21 20 18 23 23 C 1.38304 * 119.87932 * 179.71356 * 22 21 20 24 24 C 1.38285 * 120.14492 * 0.02562 * 23 22 21 25 25 C 1.38217 * 120.29732 * 0.04050 * 24 23 22 26 26 C 1.38748 * 119.96629 * 359.97438 * 25 24 23 27 27 C 1.48534 * 110.99623 * 320.02533 * 11 10 9 28 28 C 1.52996 * 117.49979 * 129.08979 * 9 7 2 29 29 C 1.53004 * 117.49805 * 60.43021 * 9 7 2 30 30 H 0.97000 * 119.99798 * 177.37732 * 1 2 3 31 31 H 1.09008 * 109.47429 * 62.01216 * 10 9 7 32 32 H 1.08998 * 109.47123 * 182.00995 * 10 9 7 33 33 H 1.09002 * 109.91048 * 333.50446 * 12 11 10 34 34 H 1.08990 * 109.92009 * 94.79835 * 12 11 10 35 35 H 1.09004 * 110.30939 * 120.13560 * 13 12 11 36 36 H 1.09002 * 110.30814 * 242.20244 * 13 12 11 37 37 H 1.08995 * 109.37732 * 46.15188 * 17 16 14 38 38 H 1.09000 * 109.37013 * 165.79795 * 17 16 14 39 39 H 0.97006 * 120.70106 * 180.84062 * 20 18 17 40 40 H 1.08004 * 120.05773 * 359.71320 * 22 21 20 41 41 H 1.07997 * 119.92183 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.84750 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.01505 * 180.02562 * 25 24 23 44 44 H 1.09003 * 110.66538 * 278.15269 * 27 11 10 45 45 H 1.08988 * 110.66853 * 41.29247 * 27 11 10 46 46 H 1.09008 * 117.49892 * 359.97438 * 28 9 7 47 47 H 1.08995 * 117.50120 * 145.01500 * 28 9 7 48 48 H 1.08994 * 117.49685 * 214.98189 * 29 9 7 49 49 H 1.09000 * 117.49654 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2888 2.7438 0.1217 5 1 3.1920 1.6450 1.1470 6 1 3.0093 1.7504 -1.2688 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1096 9 6 1.2587 -2.4948 -0.1512 10 6 0.6942 -3.0865 1.1419 11 7 1.7870 -3.3020 2.0997 12 6 2.1949 -2.0296 2.7337 13 6 3.7136 -2.1117 2.9751 14 6 4.1381 -3.4876 2.4126 15 1 4.1848 -4.2318 3.2076 16 7 5.4291 -3.3896 1.7184 17 6 5.7296 -4.6266 0.9905 18 6 6.1288 -5.7110 1.9576 19 8 5.8211 -6.8647 1.7439 20 7 6.8320 -5.3874 3.0653 21 6 7.1534 -4.0398 3.2868 22 6 8.1631 -3.6956 4.1700 23 6 8.4745 -2.3638 4.3753 24 6 7.7798 -1.3763 3.7013 25 6 6.7700 -1.7122 2.8194 26 6 6.4503 -3.0456 2.6072 27 6 2.9993 -3.8208 1.4160 28 6 1.7540 -3.4729 -1.2183 29 6 0.4503 -2.7002 -1.4339 30 1 -0.4850 -0.8392 -0.0384 31 1 -0.0333 -2.3967 1.5699 32 1 0.2086 -4.0378 0.9246 33 1 1.9690 -1.1950 2.0699 34 1 1.6742 -1.9040 3.6829 35 1 4.2254 -1.3107 2.4417 36 1 3.9307 -2.0540 4.0418 37 1 4.8463 -4.9437 0.4362 38 1 6.5469 -4.4458 0.2924 39 1 7.1089 -6.0725 3.6939 40 1 8.7063 -4.4658 4.6975 41 1 9.2620 -2.0946 5.0636 42 1 8.0272 -0.3378 3.8649 43 1 6.2306 -0.9372 2.2950 44 1 2.9241 -4.8975 1.2638 45 1 3.1556 -3.3071 0.4676 46 1 2.6191 -3.1754 -1.8110 47 1 1.6775 -4.5379 -0.9993 48 1 -0.4834 -3.2571 -1.3566 49 1 0.4576 -1.8943 -2.1678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878431914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:43 Heat of formation + Delta-G solvation = 47.040666 kcal Electronic energy + Delta-G solvation = -31677.095406 eV Core-core repulsion = 27798.055992 eV Total energy + Delta-G solvation = -3879.039414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.55609 -39.05377 -38.72170 -36.84018 -35.45478 -34.73570 -32.04021 -30.63843 -30.55676 -29.65568 -27.86281 -26.44846 -25.17255 -24.39124 -23.12034 -22.73169 -21.55273 -20.70461 -20.38995 -19.23229 -18.95459 -18.08254 -17.50377 -16.89506 -16.36820 -16.11305 -15.21492 -15.08417 -14.92298 -14.61581 -14.15851 -13.94946 -13.90565 -13.79464 -13.66189 -13.23369 -13.08380 -12.76304 -12.65166 -12.23907 -11.99595 -11.85105 -11.62917 -11.38570 -11.01938 -10.89515 -10.82571 -10.74689 -10.60866 -10.58164 -10.48614 -10.41166 -10.17120 -10.02271 -9.56185 -9.19625 -8.59151 -8.57448 -8.46861 -8.38148 -8.01201 -7.39494 -6.39780 -4.08639 1.01065 1.16390 2.33099 2.77516 3.36497 3.39491 3.49236 3.56948 3.69613 4.14102 4.43699 4.61157 4.75193 4.85909 4.93951 5.09289 5.12206 5.18451 5.22555 5.26919 5.32166 5.33870 5.51748 5.53208 5.75007 5.87964 5.92775 5.97722 6.00758 6.12926 6.19831 6.26500 6.28910 6.32445 6.35539 6.44495 6.46660 6.54387 6.57983 6.64140 6.77225 6.79006 6.84548 6.87874 7.00266 7.12315 7.24768 7.26994 7.37968 7.73039 7.77727 7.88877 8.23920 8.37040 8.80774 9.58498 10.98640 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.004538 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.799318 B = 6168.010653 C = 7547.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.028 3.972 3 Si 1.057 2.943 4 H -0.284 1.284 5 H -0.286 1.286 6 H -0.288 1.288 7 C -0.562 4.562 8 H 0.058 0.942 9 C -0.003 4.003 10 C 0.080 3.920 11 N -0.505 5.505 12 C 0.017 3.983 13 C -0.110 4.110 14 C 0.082 3.918 15 H 0.047 0.953 16 N -0.472 5.472 17 C 0.039 3.961 18 C 0.491 3.509 19 O -0.523 6.523 20 N -0.667 5.667 21 C 0.121 3.879 22 C -0.146 4.146 23 C -0.099 4.099 24 C -0.132 4.132 25 C -0.067 4.067 26 C 0.068 3.932 27 C 0.034 3.966 28 C -0.196 4.196 29 C -0.181 4.181 30 H 0.276 0.724 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.127 0.873 38 H 0.114 0.886 39 H 0.409 0.591 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.058 0.942 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.037 -4.257 7.607 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.886 3.114 4 H -0.209 1.209 5 H -0.212 1.212 6 H -0.215 1.215 7 C -0.600 4.600 8 H 0.076 0.924 9 C -0.004 4.004 10 C -0.049 4.049 11 N -0.228 5.228 12 C -0.111 4.111 13 C -0.148 4.148 14 C -0.024 4.024 15 H 0.065 0.935 16 N -0.192 5.192 17 C -0.091 4.091 18 C 0.277 3.723 19 O -0.396 6.396 20 N -0.313 5.313 21 C 0.023 3.977 22 C -0.167 4.167 23 C -0.117 4.117 24 C -0.151 4.151 25 C -0.087 4.087 26 C -0.029 4.029 27 C -0.094 4.094 28 C -0.233 4.233 29 C -0.219 4.219 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.132 0.868 39 H 0.247 0.753 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.254 -3.201 7.401 16.377 hybrid contribution 0.744 -2.204 0.161 2.332 sum 14.997 -5.405 7.562 17.644 Atomic orbital electron populations 1.70733 1.06840 1.31533 1.44414 1.25663 0.96512 1.01945 0.93699 0.83698 0.75113 0.75868 0.76720 1.20928 1.21185 1.21504 1.21182 0.94265 0.89502 1.55043 0.92416 1.19778 0.98383 0.95402 0.86868 1.21856 0.93186 0.97662 0.92196 1.65073 1.05900 1.24508 1.27294 1.23237 0.92510 0.95676 0.99633 1.22361 0.97434 0.95770 0.99236 1.22733 0.86284 0.98271 0.95125 0.93501 1.59300 1.01771 1.30941 1.27161 1.22586 1.05327 0.85612 0.95614 1.22174 0.76381 0.91228 0.82483 1.90767 1.53033 1.21281 1.74538 1.43948 1.55180 1.07290 1.24893 1.18412 0.97793 0.83232 0.98244 1.20626 0.97814 0.97320 1.00951 1.20961 0.99555 0.91867 0.99358 1.21090 0.96741 0.99730 0.97575 1.21017 0.96178 0.94356 0.97130 1.18518 0.95247 0.92927 0.96250 1.23463 0.88397 0.99152 0.98394 1.22929 0.97940 0.95520 1.06938 1.22756 0.92961 1.02133 1.04059 0.91225 0.91418 0.93693 0.87018 0.92955 0.90283 0.92762 0.85527 0.86828 0.75309 0.85735 0.85593 0.85386 0.84278 0.92385 0.88188 0.90281 0.91650 0.91744 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.71 13.55 55.43 0.75 -23.95 16 2 C 0.03 0.72 4.86 -17.82 -0.09 0.64 16 3 Si 1.06 23.17 29.91 -169.99 -5.08 18.09 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.56 -13.60 5.08 -34.44 -0.17 -13.78 16 8 H 0.06 1.43 7.41 -52.49 -0.39 1.05 16 9 C 0.00 -0.06 0.16 -155.66 -0.03 -0.09 16 10 C 0.08 1.71 5.56 -3.83 -0.02 1.69 16 11 N -0.51 -10.04 5.54 -230.46 -1.28 -11.32 16 12 C 0.02 0.33 6.02 -2.76 -0.02 0.32 16 13 C -0.11 -1.84 5.54 -25.38 -0.14 -1.98 16 14 C 0.08 1.33 2.47 -65.84 -0.16 1.17 16 15 H 0.05 0.80 7.83 -51.93 -0.41 0.40 16 16 N -0.47 -6.83 4.51 -162.91 -0.73 -7.56 16 17 C 0.04 0.53 5.79 -5.12 -0.03 0.50 16 18 C 0.49 7.01 7.28 -10.83 -0.08 6.93 16 19 O -0.52 -9.04 17.96 5.54 0.10 -8.94 16 20 N -0.67 -7.91 5.49 -9.64 -0.05 -7.96 16 21 C 0.12 1.40 6.50 -83.43 -0.54 0.86 16 22 C -0.15 -1.36 9.95 -39.46 -0.39 -1.75 16 23 C -0.10 -0.84 10.04 -39.54 -0.40 -1.24 16 24 C -0.13 -1.25 10.03 -39.57 -0.40 -1.65 16 25 C -0.07 -0.79 8.82 -39.40 -0.35 -1.14 16 26 C 0.07 0.88 4.58 -83.64 -0.38 0.50 16 27 C 0.03 0.62 3.81 -1.89 -0.01 0.62 16 28 C -0.20 -4.01 7.76 -26.70 -0.21 -4.22 16 29 C -0.18 -3.98 8.73 -26.69 -0.23 -4.22 16 30 H 0.28 7.58 6.15 -40.82 -0.25 7.33 16 31 H 0.07 1.57 7.60 -51.92 -0.39 1.18 16 32 H 0.04 0.93 8.11 -51.93 -0.42 0.50 16 33 H 0.11 2.54 4.45 -51.93 -0.23 2.31 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.36 6.53 -51.93 -0.34 1.02 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.13 1.81 6.32 -51.93 -0.33 1.48 16 38 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.41 4.05 8.90 -40.82 -0.36 3.69 16 40 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 43 H 0.14 1.70 7.07 -52.48 -0.37 1.33 16 44 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 45 H 0.10 2.00 3.92 -51.94 -0.20 1.79 16 46 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.08 1.94 8.14 -51.93 -0.42 1.51 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -28.30 374.42 -11.42 -39.72 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.12 Total: 13.13 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -3.64 Total: -16.85 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -1.31 Total: -50.80 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.10 Total: -8.94 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.08 Total: 18.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.30 -11.42 -39.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878431914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.765 kcal (2) G-P(sol) polarization free energy of solvation -28.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds