Wall clock time and date at job start Wed Apr 1 2020 00:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47053 * 4.98780 * 3 2 1 5 5 H 1.48501 * 109.47280 * 124.98718 * 3 2 1 6 6 H 1.48500 * 109.47315 * 244.99073 * 3 2 1 7 7 C 1.37881 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00263 * 186.69632 * 7 2 1 9 9 C 1.50704 * 119.99911 * 6.70071 * 7 2 1 10 10 C 1.52995 * 115.54854 * 274.76266 * 9 7 2 11 11 N 1.46901 * 109.47097 * 302.01159 * 10 9 7 12 12 C 1.47898 * 111.00260 * 77.42637 * 11 10 9 13 13 C 1.53995 * 107.05637 * 214.15635 * 12 11 10 14 14 C 1.54592 * 105.14087 * 1.22095 * 13 12 11 15 15 H 1.08995 * 110.72924 * 263.60155 * 14 13 12 16 16 N 1.46910 * 110.72289 * 140.49193 * 14 13 12 17 17 C 1.46637 * 110.99751 * 189.61285 * 16 14 13 18 18 C 1.50688 * 110.04922 * 285.97224 * 17 16 14 19 19 O 1.21297 * 120.27433 * 145.05408 * 18 17 16 20 20 N 1.35133 * 119.44726 * 325.08076 * 18 17 16 21 21 C 1.40299 * 118.59468 * 0.82090 * 20 18 17 22 22 C 1.38495 * 120.42676 * 198.19719 * 21 20 18 23 23 C 1.38304 * 119.87932 * 179.71356 * 22 21 20 24 24 C 1.38285 * 120.14492 * 0.02562 * 23 22 21 25 25 C 1.38217 * 120.29732 * 0.04050 * 24 23 22 26 26 C 1.38748 * 119.96629 * 359.97438 * 25 24 23 27 27 C 1.48534 * 110.99623 * 320.02533 * 11 10 9 28 28 C 1.52996 * 117.49979 * 129.08979 * 9 7 2 29 29 C 1.53004 * 117.49805 * 60.43021 * 9 7 2 30 30 H 0.97000 * 119.99798 * 177.37732 * 1 2 3 31 31 H 1.09008 * 109.47429 * 62.01216 * 10 9 7 32 32 H 1.08998 * 109.47123 * 182.00995 * 10 9 7 33 33 H 1.09002 * 109.91048 * 333.50446 * 12 11 10 34 34 H 1.08990 * 109.92009 * 94.79835 * 12 11 10 35 35 H 1.09004 * 110.30939 * 120.13560 * 13 12 11 36 36 H 1.09002 * 110.30814 * 242.20244 * 13 12 11 37 37 H 1.08995 * 109.37732 * 46.15188 * 17 16 14 38 38 H 1.09000 * 109.37013 * 165.79795 * 17 16 14 39 39 H 0.97006 * 120.70106 * 180.84062 * 20 18 17 40 40 H 1.08004 * 120.05773 * 359.71320 * 22 21 20 41 41 H 1.07997 * 119.92183 * 180.02562 * 23 22 21 42 42 H 1.07998 * 119.84750 * 180.02562 * 24 23 22 43 43 H 1.08007 * 120.01505 * 180.02562 * 25 24 23 44 44 H 1.09003 * 110.66538 * 278.15269 * 27 11 10 45 45 H 1.08988 * 110.66853 * 41.29247 * 27 11 10 46 46 H 1.09008 * 117.49892 * 359.97438 * 28 9 7 47 47 H 1.08995 * 117.50120 * 145.01500 * 28 9 7 48 48 H 1.08994 * 117.49685 * 214.98189 * 29 9 7 49 49 H 1.09000 * 117.49654 * 359.97438 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2888 2.7438 0.1217 5 1 3.1920 1.6450 1.1470 6 1 3.0093 1.7504 -1.2688 7 6 2.0045 -1.1941 0.0005 8 1 3.0789 -1.1973 0.1096 9 6 1.2587 -2.4948 -0.1512 10 6 0.6942 -3.0865 1.1419 11 7 1.7870 -3.3020 2.0997 12 6 2.1949 -2.0296 2.7337 13 6 3.7136 -2.1117 2.9751 14 6 4.1381 -3.4876 2.4126 15 1 4.1848 -4.2318 3.2076 16 7 5.4291 -3.3896 1.7184 17 6 5.7296 -4.6266 0.9905 18 6 6.1288 -5.7110 1.9576 19 8 5.8211 -6.8647 1.7439 20 7 6.8320 -5.3874 3.0653 21 6 7.1534 -4.0398 3.2868 22 6 8.1631 -3.6956 4.1700 23 6 8.4745 -2.3638 4.3753 24 6 7.7798 -1.3763 3.7013 25 6 6.7700 -1.7122 2.8194 26 6 6.4503 -3.0456 2.6072 27 6 2.9993 -3.8208 1.4160 28 6 1.7540 -3.4729 -1.2183 29 6 0.4503 -2.7002 -1.4339 30 1 -0.4850 -0.8392 -0.0384 31 1 -0.0333 -2.3967 1.5699 32 1 0.2086 -4.0378 0.9246 33 1 1.9690 -1.1950 2.0699 34 1 1.6742 -1.9040 3.6829 35 1 4.2254 -1.3107 2.4417 36 1 3.9307 -2.0540 4.0418 37 1 4.8463 -4.9437 0.4362 38 1 6.5469 -4.4458 0.2924 39 1 7.1089 -6.0725 3.6939 40 1 8.7063 -4.4658 4.6975 41 1 9.2620 -2.0946 5.0636 42 1 8.0272 -0.3378 3.8649 43 1 6.2306 -0.9372 2.2950 44 1 2.9241 -4.8975 1.2638 45 1 3.1556 -3.3071 0.4676 46 1 2.6191 -3.1754 -1.8110 47 1 1.6775 -4.5379 -0.9993 48 1 -0.4834 -3.2571 -1.3566 49 1 0.4576 -1.8943 -2.1678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878431914.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:43 Heat of formation + Delta-G solvation = 28.884379 kcal Electronic energy + Delta-G solvation = -31677.882722 eV Core-core repulsion = 27798.055992 eV Total energy + Delta-G solvation = -3879.826729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.58236 -40.57991 -39.75104 -38.18727 -36.66901 -35.89774 -33.97549 -32.03778 -31.50923 -30.54297 -29.28341 -27.69208 -27.08157 -25.86340 -24.08312 -23.56977 -23.23917 -22.20497 -21.81951 -20.89574 -20.06912 -19.00742 -18.59870 -18.53053 -17.69446 -17.30620 -16.40501 -16.20484 -16.12955 -15.75005 -15.60938 -15.55718 -15.19744 -14.97539 -14.81319 -14.71439 -14.39341 -14.35100 -13.87808 -13.72929 -13.38815 -12.99129 -12.84392 -12.68093 -12.53296 -12.41833 -12.24874 -12.16788 -12.05873 -11.94330 -11.89645 -11.80876 -11.73331 -11.58834 -11.23633 -10.49446 -10.35554 -10.16971 -10.13464 -9.47399 -9.08693 -8.94917 -8.41540 -6.08071 0.14913 0.37083 1.29811 1.58649 1.63630 1.81521 1.82301 2.48338 2.62620 2.82921 3.13523 3.20094 3.32976 3.51430 3.60679 3.80395 3.85645 4.01071 4.11766 4.15907 4.19587 4.33467 4.38293 4.42514 4.47603 4.50034 4.55206 4.59144 4.63878 4.68348 4.84536 4.85114 4.91100 4.99410 5.06395 5.09534 5.15407 5.17999 5.24495 5.29653 5.41109 5.47075 5.57213 5.61596 5.64150 5.70215 5.82140 5.88947 6.13481 6.16392 6.29888 6.37407 6.38694 6.77434 6.80474 7.63349 8.97557 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.004538 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.799318 B = 6168.010653 C = 7547.654324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 1.092 2.908 4 H -0.295 1.295 5 H -0.263 1.263 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.050 0.950 9 C -0.017 4.017 10 C 0.090 3.910 11 N -0.507 5.507 12 C 0.017 3.983 13 C -0.098 4.098 14 C 0.096 3.904 15 H 0.040 0.960 16 N -0.476 5.476 17 C 0.039 3.961 18 C 0.491 3.509 19 O -0.561 6.561 20 N -0.656 5.656 21 C 0.106 3.894 22 C -0.138 4.138 23 C -0.089 4.089 24 C -0.127 4.127 25 C -0.081 4.081 26 C 0.043 3.957 27 C 0.039 3.961 28 C -0.171 4.171 29 C -0.187 4.187 30 H 0.265 0.735 31 H 0.042 0.958 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.418 0.582 40 H 0.151 0.849 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.128 0.872 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.164 -4.259 9.233 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.214 4.214 3 Si 0.917 3.083 4 H -0.221 1.221 5 H -0.188 1.188 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.019 4.019 10 C -0.039 4.039 11 N -0.230 5.230 12 C -0.111 4.111 13 C -0.136 4.136 14 C -0.010 4.010 15 H 0.058 0.942 16 N -0.195 5.195 17 C -0.091 4.091 18 C 0.279 3.721 19 O -0.438 6.438 20 N -0.302 5.302 21 C 0.009 3.991 22 C -0.159 4.159 23 C -0.107 4.107 24 C -0.146 4.146 25 C -0.101 4.101 26 C -0.054 4.054 27 C -0.089 4.089 28 C -0.208 4.208 29 C -0.225 4.225 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.258 0.742 40 H 0.169 0.831 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.146 0.854 44 H 0.077 0.923 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.429 -3.194 9.055 19.899 hybrid contribution -0.130 -2.190 -0.277 2.211 sum 17.299 -5.384 8.778 20.132 Atomic orbital electron populations 1.70833 1.07836 1.30875 1.47475 1.26656 0.96448 1.04834 0.93414 0.83242 0.74510 0.72777 0.77797 1.22103 1.18790 1.20705 1.21248 0.93804 0.90237 1.53097 0.93152 1.19800 0.99021 0.95588 0.87495 1.21675 0.93262 0.97161 0.91827 1.65071 1.06318 1.24574 1.26991 1.23147 0.94718 0.94317 0.98923 1.22239 0.95076 0.96031 1.00273 1.22459 0.86944 0.97414 0.94206 0.94224 1.59252 1.01499 1.31134 1.27635 1.22584 1.05505 0.85303 0.95726 1.22199 0.76250 0.90625 0.83056 1.90747 1.54884 1.22560 1.75587 1.43812 1.54213 1.07954 1.24224 1.18538 0.98806 0.82471 0.99274 1.20988 0.96686 0.98581 0.99674 1.21385 0.99455 0.91110 0.98786 1.21400 0.95539 1.01336 0.96317 1.21063 0.97269 0.93623 0.98107 1.18624 0.95639 0.93838 0.97280 1.23370 0.88589 0.98763 0.98177 1.22881 0.96793 0.96074 1.05049 1.22685 0.94308 1.02132 1.03390 0.92430 0.93932 0.92931 0.90087 0.92675 0.90630 0.91096 0.86568 0.85133 0.74180 0.83121 0.82195 0.83120 0.85368 0.92341 0.89710 0.90338 0.89802 0.90670 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.73 13.55 21.45 0.29 -52.44 16 2 C -0.01 -0.67 4.86 84.66 0.41 -0.26 16 3 Si 1.09 46.97 29.91 68.60 2.05 49.02 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -26.78 5.08 25.60 0.13 -26.65 16 8 H 0.05 2.52 7.41 -2.91 -0.02 2.50 16 9 C -0.02 -0.79 0.16 -52.93 -0.01 -0.80 16 10 C 0.09 3.91 5.56 86.30 0.48 4.39 16 11 N -0.51 -20.23 5.54 -883.03 -4.89 -25.12 16 12 C 0.02 0.66 6.02 86.45 0.52 1.19 16 13 C -0.10 -3.21 5.54 31.47 0.17 -3.03 16 14 C 0.10 3.07 2.47 46.12 0.11 3.18 16 15 H 0.04 1.32 7.83 -2.39 -0.02 1.31 16 16 N -0.48 -13.32 4.51 -669.33 -3.02 -16.34 16 17 C 0.04 1.04 5.79 85.60 0.50 1.54 16 18 C 0.49 13.65 7.28 87.60 0.64 14.29 16 19 O -0.56 -19.30 17.96 -3.08 -0.06 -19.36 16 20 N -0.66 -14.38 5.49 -302.60 -1.66 -16.04 16 21 C 0.11 2.19 6.50 38.14 0.25 2.44 16 22 C -0.14 -2.02 9.95 22.35 0.22 -1.80 16 23 C -0.09 -1.10 10.04 22.30 0.22 -0.87 16 24 C -0.13 -1.93 10.03 22.28 0.22 -1.70 16 25 C -0.08 -1.74 8.82 22.39 0.20 -1.54 16 26 C 0.04 1.04 4.58 38.30 0.18 1.21 16 27 C 0.04 1.42 3.81 86.65 0.33 1.75 16 28 C -0.17 -6.92 7.76 30.62 0.24 -6.68 16 29 C -0.19 -8.34 8.73 30.62 0.27 -8.08 16 30 H 0.27 15.12 6.15 -92.71 -0.57 14.55 16 31 H 0.04 2.05 7.60 -2.38 -0.02 2.03 16 32 H 0.05 2.17 8.11 -2.39 -0.02 2.15 16 33 H 0.08 3.74 4.45 -2.39 -0.01 3.73 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.54 6.53 -2.38 -0.02 2.52 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.12 3.31 6.32 -2.39 -0.02 3.29 16 38 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.42 7.44 8.90 -92.70 -0.83 6.61 16 40 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 43 H 0.13 2.98 7.07 -2.91 -0.02 2.95 16 44 H 0.06 2.11 7.69 -2.39 -0.02 2.09 16 45 H 0.08 3.38 3.92 -2.39 -0.01 3.37 16 46 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 47 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 48 H 0.07 3.15 8.14 -2.39 -0.02 3.13 16 49 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -62.50 374.42 -1.85 -64.35 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: 0.35 Total: 37.35 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 5.08 Total: -21.42 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -9.27 Total: -109.94 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.06 Total: -19.36 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.05 Total: 49.02 kcal Total: -62.50 -1.85 -64.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878431914.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.234 kcal (2) G-P(sol) polarization free energy of solvation -62.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds