Wall clock time and date at job start Wed Apr 1 2020 00:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48506 * 109.46711 * 270.00328 * 3 2 1 5 5 H 1.48497 * 109.47206 * 30.00025 * 3 2 1 6 6 H 1.48493 * 109.46912 * 150.00531 * 3 2 1 7 7 C 1.37871 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00249 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.35045 * 125.93070 * 125.01888 * 10 9 7 12 12 C 1.35077 * 107.97866 * 179.70787 * 11 10 9 13 13 C 1.50706 * 126.07361 * 180.23548 * 12 11 10 14 14 N 1.46904 * 109.47038 * 260.18778 * 13 12 11 15 15 C 1.46897 * 110.99952 * 180.02562 * 14 13 12 16 16 H 1.08999 * 112.85059 * 23.80526 * 15 14 13 17 17 C 1.53781 * 113.61659 * 154.99961 * 15 14 13 18 18 C 1.53785 * 87.08258 * 139.97986 * 17 15 14 19 19 H 1.08993 * 113.61909 * 219.93816 * 18 17 15 20 20 C 1.52998 * 113.61020 * 89.11478 * 18 17 15 21 21 O 1.42901 * 109.47057 * 175.00331 * 20 18 17 22 22 C 1.53777 * 113.61586 * 252.50102 * 15 14 13 23 23 C 1.40843 * 107.85026 * 0.39699 * 12 11 10 24 24 C 1.48425 * 126.03776 * 179.85599 * 23 12 11 25 25 C 1.39322 * 120.11522 * 144.71406 * 24 23 12 26 26 C 1.38025 * 119.87635 * 179.97438 * 25 24 23 27 27 C 1.38314 * 120.12126 * 0.02562 * 26 25 24 28 28 C 1.38317 * 120.23985 * 359.97438 * 27 26 25 29 29 C 1.38015 * 120.12060 * 0.02562 * 28 27 26 30 30 N 1.31620 * 107.92451 * 359.60139 * 23 12 11 31 31 H 0.96996 * 120.00510 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 60.00087 * 9 7 2 33 33 H 1.09001 * 109.46864 * 300.00472 * 9 7 2 34 34 H 1.08001 * 126.00568 * 359.97438 * 11 10 9 35 35 H 1.08994 * 109.47144 * 20.18886 * 13 12 11 36 36 H 1.09000 * 109.46748 * 140.19298 * 13 12 11 37 37 H 1.00898 * 110.99847 * 56.05117 * 14 13 12 38 38 H 1.08992 * 113.61597 * 254.53046 * 17 15 14 39 39 H 1.09000 * 113.61437 * 25.35269 * 17 15 14 40 40 H 1.08996 * 109.47647 * 295.00459 * 20 18 17 41 41 H 1.08998 * 109.47084 * 55.00374 * 20 18 17 42 42 H 0.96701 * 114.00547 * 180.02562 * 21 20 18 43 43 H 1.09005 * 113.61341 * 334.56408 * 22 15 14 44 44 H 1.09003 * 113.61954 * 105.46912 * 22 15 14 45 45 H 1.08000 * 120.06544 * 359.96080 * 25 24 23 46 46 H 1.07999 * 119.93671 * 179.72555 * 26 25 24 47 47 H 1.07999 * 119.87887 * 180.02562 * 27 26 25 48 48 H 1.08004 * 119.93915 * 180.02562 * 28 27 26 49 49 H 1.08005 * 120.06010 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2413 -4.6227 0.8950 12 6 3.2539 -5.4475 0.5503 13 6 3.6558 -6.7085 1.2711 14 7 4.8132 -6.4324 2.1327 15 6 5.2342 -7.6418 2.8523 16 1 4.9308 -8.5604 2.3500 17 6 6.7146 -7.6273 3.2681 18 6 6.2672 -8.2650 4.5940 19 1 6.7896 -7.8717 5.4660 20 6 6.2371 -9.7943 4.5591 21 8 5.9247 -10.2944 5.8607 22 6 4.8941 -7.6163 4.3517 23 6 3.8697 -4.9177 -0.6002 24 6 5.0297 -5.5030 -1.3179 25 6 5.1147 -5.4063 -2.7051 26 6 6.1958 -5.9519 -3.3674 27 6 7.1934 -6.5941 -2.6564 28 6 7.1140 -6.6929 -1.2791 29 6 6.0374 -6.1509 -0.6068 30 7 3.2315 -3.8148 -0.9299 31 1 -0.4851 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 1.5761 -4.7508 1.7361 35 1 2.8237 -7.0590 1.8816 36 1 3.9200 -7.4750 0.5424 37 1 4.6145 -5.6799 2.7748 38 1 7.3449 -8.2776 2.6616 39 1 7.1265 -6.6245 3.3815 40 1 5.4787 -10.1268 3.8504 41 1 7.2126 -10.1699 4.2501 42 1 5.8889 -11.2594 5.9133 43 1 4.8078 -6.6104 4.7628 44 1 4.0546 -8.2578 4.6201 45 1 4.3360 -4.9057 -3.2613 46 1 6.2604 -5.8815 -4.4432 47 1 8.0377 -7.0193 -3.1786 48 1 7.8959 -7.1951 -0.7287 49 1 5.9766 -6.2283 0.4688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923006923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:36 Heat of formation + Delta-G solvation = 68.051650 kcal Electronic energy + Delta-G solvation = -28957.039551 eV Core-core repulsion = 25078.911242 eV Total energy + Delta-G solvation = -3878.128309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61990 -39.74697 -38.47893 -36.72098 -34.72807 -33.58456 -32.20666 -30.59852 -30.27902 -29.62422 -27.64643 -26.73369 -25.83636 -24.36397 -23.60404 -22.54633 -22.20112 -21.64523 -19.81281 -19.36242 -18.84642 -17.73704 -16.67208 -16.58745 -16.14193 -16.00502 -15.37030 -15.02643 -14.86285 -14.67984 -14.30591 -14.27759 -14.04635 -13.67326 -13.29871 -13.08637 -12.93159 -12.76642 -12.62201 -12.53025 -12.29815 -12.19504 -11.93685 -11.78074 -11.66749 -11.10692 -10.96017 -10.92088 -10.82921 -10.81093 -10.61679 -10.51008 -10.26781 -10.12370 -9.87543 -9.73258 -9.02511 -8.65121 -8.61223 -8.31086 -8.07811 -7.55966 -6.27516 -4.32611 1.46312 1.74414 2.70589 3.23064 3.28810 3.29537 3.33671 3.51030 3.77765 4.17933 4.29166 4.30281 4.37927 4.62014 4.65037 4.83300 5.00708 5.04427 5.08805 5.12788 5.20339 5.23208 5.28167 5.34796 5.44368 5.47182 5.53837 5.60306 5.67091 5.77116 5.82692 5.83420 5.88633 5.95614 5.98619 6.14091 6.19395 6.28390 6.43924 6.56152 6.70520 6.81885 6.83502 6.98346 7.08621 7.10611 7.27612 7.29126 7.37607 7.45394 7.67173 7.83457 7.95851 8.55283 8.76749 9.33556 10.81411 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009053 B = 0.002960 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.158782 B = 9458.272205 C =11570.963944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.256 3.744 10 N -0.321 5.321 11 C 0.054 3.946 12 C -0.251 4.251 13 C 0.145 3.855 14 N -0.673 5.673 15 C 0.065 3.935 16 H 0.094 0.906 17 C -0.120 4.120 18 C -0.114 4.114 19 H 0.083 0.917 20 C 0.093 3.907 21 O -0.574 6.574 22 C -0.160 4.160 23 C 0.093 3.907 24 C 0.003 3.997 25 C -0.099 4.099 26 C -0.131 4.131 27 C -0.127 4.127 28 C -0.131 4.131 29 C -0.106 4.106 30 N -0.267 5.267 31 H 0.267 0.733 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.163 0.837 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.347 0.653 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.378 0.622 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.122 0.878 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.116 0.884 49 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.778 -20.649 5.220 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.100 5.100 11 C -0.096 4.096 12 C -0.264 4.264 13 C 0.016 3.984 14 N -0.304 5.304 15 C -0.046 4.046 16 H 0.112 0.888 17 C -0.158 4.158 18 C -0.133 4.133 19 H 0.101 0.899 20 C 0.016 3.984 21 O -0.379 6.379 22 C -0.199 4.199 23 C -0.070 4.070 24 C 0.001 3.999 25 C -0.118 4.118 26 C -0.149 4.149 27 C -0.145 4.145 28 C -0.149 4.149 29 C -0.125 4.125 30 N -0.090 5.090 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.180 0.820 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.167 0.833 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.225 0.775 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.140 0.860 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.790 -18.798 4.018 22.550 hybrid contribution -0.420 -0.240 1.040 1.147 sum 11.370 -19.038 5.058 22.744 Atomic orbital electron populations 1.69912 1.06060 1.27687 1.49716 1.24936 0.94977 0.99579 0.94508 0.86325 0.79687 0.82044 0.78471 1.20263 1.20972 1.19636 1.21235 0.94012 0.89268 1.52158 0.91247 1.19754 0.85719 0.81404 0.99224 1.49382 1.23415 1.19121 1.18117 1.22222 1.00271 0.90388 0.96729 1.19594 1.02674 1.02411 1.01729 1.20042 0.90295 0.93938 0.94093 1.60426 1.37586 1.07281 1.25066 1.23107 0.95953 0.93955 0.91543 0.88761 1.23102 0.96732 1.01419 0.94559 1.22156 0.98460 0.93319 0.99397 0.89858 1.21993 0.98803 0.93478 0.84168 1.86490 1.94053 1.26229 1.31177 1.23691 0.97086 1.01388 0.97751 1.20453 0.96528 0.94282 0.95728 1.17898 0.92377 0.97568 0.92037 1.21298 0.98169 0.98470 0.93877 1.20982 0.94735 0.99608 0.99540 1.21128 0.98683 1.00106 0.94620 1.21035 0.98478 1.01184 0.94173 1.22147 0.91989 0.95208 1.03166 1.77656 1.00916 1.16354 1.14124 0.92297 0.93663 0.92764 0.82007 0.94992 0.90835 0.83294 0.91298 0.88976 0.93447 0.93412 0.77521 0.89671 0.91503 0.85990 0.86507 0.86847 0.86555 0.81702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.26 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -14.65 9.23 -34.44 -0.32 -14.97 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.26 6.42 6.26 -5.19 -0.03 6.39 16 10 N -0.32 -7.22 3.67 -62.58 -0.23 -7.45 16 11 C 0.05 0.99 11.33 -17.26 -0.20 0.80 16 12 C -0.25 -4.24 5.58 -104.76 -0.59 -4.82 16 13 C 0.15 1.83 4.94 -4.97 -0.02 1.81 16 14 N -0.67 -7.46 4.16 -107.13 -0.45 -7.91 16 15 C 0.07 0.57 3.83 -66.90 -0.26 0.32 16 16 H 0.09 0.80 7.44 -51.93 -0.39 0.41 16 17 C -0.12 -0.97 7.47 -25.92 -0.19 -1.16 16 18 C -0.11 -0.94 4.20 -89.80 -0.38 -1.32 16 19 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 20 C 0.09 0.67 6.72 37.16 0.25 0.92 16 21 O -0.57 -4.67 13.66 -35.23 -0.48 -5.15 16 22 C -0.16 -1.40 7.23 -25.92 -0.19 -1.59 16 23 C 0.09 1.81 6.74 -82.78 -0.56 1.25 16 24 C 0.00 0.05 5.80 -104.89 -0.61 -0.56 16 25 C -0.10 -1.60 9.75 -39.26 -0.38 -1.98 16 26 C -0.13 -1.76 10.03 -39.63 -0.40 -2.15 16 27 C -0.13 -1.55 10.04 -39.52 -0.40 -1.94 16 28 C -0.13 -1.63 10.03 -39.63 -0.40 -2.03 16 29 C -0.11 -1.54 8.78 -39.26 -0.34 -1.88 16 30 N -0.27 -6.12 12.40 33.43 0.41 -5.71 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.33 8.07 -51.93 -0.42 0.91 16 34 H 0.16 2.43 8.06 -52.49 -0.42 2.01 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.93 7.77 -51.93 -0.40 0.52 16 37 H 0.35 4.03 8.19 -39.29 -0.32 3.71 16 38 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.31 7.39 -51.93 -0.38 -0.07 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.38 1.33 9.12 45.56 0.42 1.74 16 43 H 0.08 0.77 7.83 -51.93 -0.41 0.37 16 44 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 45 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 49 H 0.17 2.28 4.73 -52.48 -0.25 2.04 16 LS Contribution 405.31 15.07 6.11 6.11 Total: -1.00 -31.47 405.31 -10.79 -42.26 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.77 Total: 7.21 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -5.10 Total: -21.29 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 0.48 Total: -45.59 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.48 Total: -5.15 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.47 -10.79 -42.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923006923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.314 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds