Wall clock time and date at job start Wed Apr 1 2020 00:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48506 * 109.46711 * 270.00328 * 3 2 1 5 5 H 1.48497 * 109.47206 * 30.00025 * 3 2 1 6 6 H 1.48493 * 109.46912 * 150.00531 * 3 2 1 7 7 C 1.37871 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00249 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.35045 * 125.93070 * 125.01888 * 10 9 7 12 12 C 1.35077 * 107.97866 * 179.70787 * 11 10 9 13 13 C 1.50706 * 126.07361 * 180.23548 * 12 11 10 14 14 N 1.46904 * 109.47038 * 260.18778 * 13 12 11 15 15 C 1.46897 * 110.99952 * 180.02562 * 14 13 12 16 16 H 1.08999 * 112.85059 * 23.80526 * 15 14 13 17 17 C 1.53781 * 113.61659 * 154.99961 * 15 14 13 18 18 C 1.53785 * 87.08258 * 139.97986 * 17 15 14 19 19 H 1.08993 * 113.61909 * 219.93816 * 18 17 15 20 20 C 1.52998 * 113.61020 * 89.11478 * 18 17 15 21 21 O 1.42901 * 109.47057 * 175.00331 * 20 18 17 22 22 C 1.53777 * 113.61586 * 252.50102 * 15 14 13 23 23 C 1.40843 * 107.85026 * 0.39699 * 12 11 10 24 24 C 1.48425 * 126.03776 * 179.85599 * 23 12 11 25 25 C 1.39322 * 120.11522 * 144.71406 * 24 23 12 26 26 C 1.38025 * 119.87635 * 179.97438 * 25 24 23 27 27 C 1.38314 * 120.12126 * 0.02562 * 26 25 24 28 28 C 1.38317 * 120.23985 * 359.97438 * 27 26 25 29 29 C 1.38015 * 120.12060 * 0.02562 * 28 27 26 30 30 N 1.31620 * 107.92451 * 359.60139 * 23 12 11 31 31 H 0.96996 * 120.00510 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.47002 * 60.00087 * 9 7 2 33 33 H 1.09001 * 109.46864 * 300.00472 * 9 7 2 34 34 H 1.08001 * 126.00568 * 359.97438 * 11 10 9 35 35 H 1.08994 * 109.47144 * 20.18886 * 13 12 11 36 36 H 1.09000 * 109.46748 * 140.19298 * 13 12 11 37 37 H 1.00898 * 110.99847 * 56.05117 * 14 13 12 38 38 H 1.08992 * 113.61597 * 254.53046 * 17 15 14 39 39 H 1.09000 * 113.61437 * 25.35269 * 17 15 14 40 40 H 1.08996 * 109.47647 * 295.00459 * 20 18 17 41 41 H 1.08998 * 109.47084 * 55.00374 * 20 18 17 42 42 H 0.96701 * 114.00547 * 180.02562 * 21 20 18 43 43 H 1.09005 * 113.61341 * 334.56408 * 22 15 14 44 44 H 1.09003 * 113.61954 * 105.46912 * 22 15 14 45 45 H 1.08000 * 120.06544 * 359.96080 * 25 24 23 46 46 H 1.07999 * 119.93671 * 179.72555 * 26 25 24 47 47 H 1.07999 * 119.87887 * 180.02562 * 27 26 25 48 48 H 1.08004 * 119.93915 * 180.02562 * 28 27 26 49 49 H 1.08005 * 120.06010 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4964 2.0465 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.2413 -4.6227 0.8950 12 6 3.2539 -5.4475 0.5503 13 6 3.6558 -6.7085 1.2711 14 7 4.8132 -6.4324 2.1327 15 6 5.2342 -7.6418 2.8523 16 1 4.9308 -8.5604 2.3500 17 6 6.7146 -7.6273 3.2681 18 6 6.2672 -8.2650 4.5940 19 1 6.7896 -7.8717 5.4660 20 6 6.2371 -9.7943 4.5591 21 8 5.9247 -10.2944 5.8607 22 6 4.8941 -7.6163 4.3517 23 6 3.8697 -4.9177 -0.6002 24 6 5.0297 -5.5030 -1.3179 25 6 5.1147 -5.4063 -2.7051 26 6 6.1958 -5.9519 -3.3674 27 6 7.1934 -6.5941 -2.6564 28 6 7.1140 -6.6929 -1.2791 29 6 6.0374 -6.1509 -0.6068 30 7 3.2315 -3.8148 -0.9299 31 1 -0.4851 0.8400 0.0004 32 1 0.6242 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 1.5761 -4.7508 1.7361 35 1 2.8237 -7.0590 1.8816 36 1 3.9200 -7.4750 0.5424 37 1 4.6145 -5.6799 2.7748 38 1 7.3449 -8.2776 2.6616 39 1 7.1265 -6.6245 3.3815 40 1 5.4787 -10.1268 3.8504 41 1 7.2126 -10.1699 4.2501 42 1 5.8889 -11.2594 5.9133 43 1 4.8078 -6.6104 4.7628 44 1 4.0546 -8.2578 4.6201 45 1 4.3360 -4.9057 -3.2613 46 1 6.2604 -5.8815 -4.4432 47 1 8.0377 -7.0193 -3.1786 48 1 7.8959 -7.1951 -0.7287 49 1 5.9766 -6.2283 0.4688 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923006923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:35 Heat of formation + Delta-G solvation = 48.301981 kcal Electronic energy + Delta-G solvation = -28957.895961 eV Core-core repulsion = 25078.911242 eV Total energy + Delta-G solvation = -3878.984719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.07653 -40.45479 -39.60175 -37.34169 -36.01960 -35.20247 -33.78306 -31.74926 -31.62777 -30.94170 -29.01465 -27.83917 -26.49710 -25.73143 -25.04235 -23.37264 -23.28280 -23.02148 -21.23696 -20.60768 -19.66339 -18.67297 -18.29177 -17.92644 -17.28258 -16.86483 -16.56901 -16.22494 -16.03002 -15.77428 -15.65726 -15.40830 -15.04881 -14.79022 -14.57198 -14.16179 -14.09503 -14.04705 -13.91504 -13.55661 -13.45048 -13.33075 -13.22821 -12.98854 -12.77324 -12.68211 -12.55005 -12.31746 -11.99100 -11.90914 -11.72339 -11.70482 -11.40796 -11.22475 -11.15456 -10.78330 -10.69355 -10.48583 -9.69709 -9.51752 -9.16401 -8.98596 -8.37536 -6.51814 0.29826 0.65894 1.21301 1.33758 1.35597 1.46639 1.88174 1.98003 2.31403 2.93810 3.09044 3.27885 3.43608 3.67997 3.72282 3.87059 3.97522 4.02527 4.20307 4.21670 4.27531 4.31636 4.38939 4.50198 4.51192 4.54880 4.65024 4.73139 4.75078 4.81920 4.85625 4.89287 4.90655 4.95179 5.10889 5.12175 5.14195 5.20328 5.26042 5.35351 5.40635 5.47312 5.53089 5.59458 5.75453 5.76656 5.89377 5.94993 6.22733 6.27106 6.31217 6.52231 6.60963 6.95678 7.03294 7.18466 8.70059 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009053 B = 0.002960 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.158782 B = 9458.272205 C =11570.963944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.020 3.980 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.048 0.952 9 C 0.273 3.727 10 N -0.350 5.350 11 C 0.048 3.952 12 C -0.239 4.239 13 C 0.155 3.845 14 N -0.676 5.676 15 C 0.070 3.930 16 H 0.106 0.894 17 C -0.112 4.112 18 C -0.113 4.113 19 H 0.071 0.929 20 C 0.093 3.907 21 O -0.597 6.597 22 C -0.160 4.160 23 C 0.095 3.905 24 C -0.030 4.030 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.116 4.116 28 C -0.125 4.125 29 C -0.107 4.107 30 N -0.326 5.326 31 H 0.273 0.727 32 H 0.017 0.983 33 H 0.056 0.944 34 H 0.192 0.808 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.344 0.656 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.396 0.604 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.138 0.862 47 H 0.151 0.849 48 H 0.152 0.848 49 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.388 -22.805 5.751 27.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.181 4.181 3 Si 0.794 3.206 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.197 1.197 7 C -0.585 4.585 8 H 0.067 0.933 9 C 0.154 3.846 10 N -0.130 5.130 11 C -0.101 4.101 12 C -0.252 4.252 13 C 0.026 3.974 14 N -0.306 5.306 15 C -0.040 4.040 16 H 0.124 0.876 17 C -0.151 4.151 18 C -0.133 4.133 19 H 0.090 0.910 20 C 0.015 3.985 21 O -0.406 6.406 22 C -0.199 4.199 23 C -0.069 4.069 24 C -0.032 4.032 25 C -0.142 4.142 26 C -0.150 4.150 27 C -0.134 4.134 28 C -0.142 4.142 29 C -0.126 4.126 30 N -0.150 5.150 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.209 0.791 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.246 0.754 43 H 0.096 0.904 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.156 0.844 47 H 0.169 0.831 48 H 0.170 0.830 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.402 -20.997 4.561 25.867 hybrid contribution -1.122 0.274 0.855 1.437 sum 13.280 -20.723 5.416 25.202 Atomic orbital electron populations 1.69985 1.07162 1.28807 1.49915 1.25724 0.95852 1.02687 0.93832 0.85377 0.78447 0.78233 0.78564 1.19952 1.19317 1.19739 1.21357 0.93183 0.91061 1.52854 0.93336 1.19252 0.85825 0.81808 0.97720 1.49075 1.24088 1.19977 1.19890 1.22842 1.01090 0.89383 0.96742 1.20052 1.01182 1.03147 1.00773 1.19999 0.91505 0.91557 0.94331 1.60368 1.36672 1.08279 1.25318 1.23159 0.96475 0.93226 0.91156 0.87646 1.23032 0.96245 1.01298 0.94502 1.22160 0.97715 0.94368 0.99014 0.91046 1.22030 0.99910 0.92485 0.84047 1.86438 1.94168 1.28200 1.31803 1.23663 0.97441 1.01038 0.97786 1.21087 0.96476 0.93139 0.96159 1.18059 0.92918 0.99656 0.92523 1.21297 0.99126 0.99851 0.93903 1.21259 0.93986 0.98963 1.00799 1.21577 0.98793 0.98334 0.94721 1.21446 0.98166 1.00011 0.94606 1.22275 0.91948 0.94898 1.03498 1.77569 1.02517 1.18947 1.15934 0.91774 0.96551 0.92661 0.79124 0.93384 0.90275 0.83698 0.89794 0.89802 0.92547 0.91969 0.75385 0.90404 0.91864 0.88315 0.84376 0.83135 0.83044 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.06 13.29 21.44 0.28 -52.78 16 2 C 0.02 1.10 5.46 84.65 0.46 1.57 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.55 -31.74 9.23 25.60 0.24 -31.50 16 8 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 9 C 0.27 14.52 6.26 85.63 0.54 15.05 16 10 N -0.35 -16.66 3.67 -351.91 -1.29 -17.95 16 11 C 0.05 1.79 11.33 83.47 0.95 2.73 16 12 C -0.24 -8.11 5.58 -19.95 -0.11 -8.22 16 13 C 0.16 3.67 4.94 85.56 0.42 4.10 16 14 N -0.68 -13.82 4.16 -492.86 -2.05 -15.87 16 15 C 0.07 1.06 3.83 45.44 0.17 1.23 16 16 H 0.11 1.42 7.44 -2.39 -0.02 1.40 16 17 C -0.11 -1.53 7.47 31.12 0.23 -1.30 16 18 C -0.11 -1.65 4.20 -10.27 -0.04 -1.69 16 19 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 20 C 0.09 1.09 6.72 71.98 0.48 1.57 16 21 O -0.60 -8.52 13.66 -148.98 -2.03 -10.55 16 22 C -0.16 -2.55 7.23 31.12 0.22 -2.33 16 23 C 0.10 3.82 6.74 42.53 0.29 4.11 16 24 C -0.03 -1.02 5.80 -20.04 -0.12 -1.13 16 25 C -0.12 -4.04 9.75 22.48 0.22 -3.82 16 26 C -0.13 -3.32 10.03 22.24 0.22 -3.10 16 27 C -0.12 -2.38 10.04 22.31 0.22 -2.15 16 28 C -0.12 -2.63 10.03 22.24 0.22 -2.41 16 29 C -0.11 -2.91 8.78 22.48 0.20 -2.71 16 30 N -0.33 -15.93 12.40 -48.15 -0.60 -16.53 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 2.86 8.07 -2.39 -0.02 2.84 16 34 H 0.19 5.70 8.06 -2.91 -0.02 5.68 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 1.83 7.77 -2.39 -0.02 1.81 16 37 H 0.34 7.60 8.19 -89.70 -0.73 6.87 16 38 H 0.08 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.06 0.56 7.39 -2.39 -0.02 0.54 16 41 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.40 1.95 9.12 -74.06 -0.68 1.27 16 43 H 0.08 1.35 7.83 -2.38 -0.02 1.33 16 44 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 45 H 0.10 3.60 8.06 -2.91 -0.02 3.58 16 46 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 48 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 49 H 0.17 4.35 4.73 -2.91 -0.01 4.34 16 Total: -1.00 -71.85 405.31 0.72 -71.13 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: -0.44 Total: 25.75 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.82 Total: -30.00 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -3.65 Total: -103.13 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -2.03 Total: -10.55 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -71.85 0.72 -71.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923006923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.428 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds