Wall clock time and date at job start Wed Apr 1 2020 00:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.47069 * 136.06210 * 359.62483 * 9 7 2 11 11 C 1.53752 * 87.88789 * 152.96059 * 10 9 7 12 12 N 1.46896 * 114.40048 * 272.67638 * 11 10 9 13 13 C 1.46899 * 110.99893 * 32.88755 * 12 11 10 14 14 C 1.53235 * 109.34321 * 172.74378 * 13 12 11 15 15 N 1.47091 * 108.51863 * 53.83280 * 14 13 12 16 16 C 1.34775 * 120.88044 * 128.79354 * 15 14 13 17 17 O 1.21277 * 119.99757 * 180.02562 * 16 15 14 18 18 C 1.50697 * 119.99746 * 0.02562 * 16 15 14 19 19 H 1.08997 * 112.83377 * 311.10878 * 18 16 15 20 20 C 1.53535 * 113.58414 * 180.02562 * 18 16 15 21 21 C 1.51611 * 87.24313 * 245.40695 * 20 18 16 22 22 C 1.38372 * 147.52590 * 179.97438 * 21 20 18 23 23 C 1.38096 * 120.33103 * 179.97438 * 22 21 20 24 24 C 1.38252 * 119.95234 * 0.03536 * 23 22 21 25 25 C 1.38093 * 119.95179 * 359.97438 * 24 23 22 26 26 C 1.38373 * 120.33393 * 0.02562 * 25 24 23 27 27 C 1.47080 * 118.23367 * 308.81688 * 15 14 13 28 28 C 1.46903 * 111.00224 * 268.58939 * 12 11 10 29 29 C 1.47067 * 136.05567 * 179.97438 * 9 7 2 30 30 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 31 31 H 1.08997 * 113.46954 * 267.70004 * 10 9 7 32 32 H 1.09002 * 113.46018 * 38.13779 * 10 9 7 33 33 H 1.09006 * 114.26345 * 139.78885 * 11 10 9 34 34 H 1.09000 * 109.49789 * 292.70850 * 13 12 11 35 35 H 1.09006 * 109.48938 * 52.79241 * 13 12 11 36 36 H 1.09005 * 109.63313 * 294.12856 * 14 13 12 37 37 H 1.09000 * 109.63375 * 173.54086 * 14 13 12 38 38 H 1.08997 * 113.58283 * 359.97438 * 20 18 16 39 39 H 1.09000 * 113.58398 * 130.81363 * 20 18 16 40 40 H 1.07998 * 119.83710 * 0.03900 * 22 21 20 41 41 H 1.07993 * 120.02615 * 180.02562 * 23 22 21 42 42 H 1.07996 * 120.02132 * 179.97438 * 24 23 22 43 43 H 1.08005 * 119.83363 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.62583 * 291.47065 * 27 15 14 45 45 H 1.09000 * 109.62408 * 170.89640 * 27 15 14 46 46 H 1.09003 * 109.49068 * 307.20956 * 28 12 11 47 47 H 1.09000 * 109.49015 * 67.26557 * 28 12 11 48 48 H 1.09001 * 113.46969 * 321.86750 * 29 9 7 49 49 H 1.09008 * 113.46851 * 92.24765 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 -0.0878 -2.7948 0.0193 11 6 0.3416 -4.0953 -0.6796 12 7 0.3961 -4.0072 -2.1449 13 6 0.7941 -2.6608 -2.5769 14 6 1.0149 -2.6588 -4.0933 15 7 -0.1944 -3.1881 -4.7421 16 6 -0.7925 -2.5147 -5.7448 17 8 -1.7892 -2.9657 -6.2681 18 6 -0.2226 -1.2015 -6.2155 19 1 -0.0102 -0.5146 -5.3962 20 6 -1.0188 -0.5620 -7.3619 21 6 0.2040 -0.7753 -8.2325 22 6 0.7884 -0.6351 -9.4789 23 6 2.0825 -1.0661 -9.6947 24 6 2.7997 -1.6416 -8.6623 25 6 2.2210 -1.7841 -7.4166 26 6 0.9247 -1.3539 -7.1948 27 6 -0.7338 -4.4714 -4.2673 28 6 -0.8857 -4.4019 -2.7441 29 6 1.6799 -3.8153 0.0177 30 1 -0.4850 0.8400 -0.0041 31 1 -0.4885 -2.9520 1.0207 32 1 -0.7256 -2.1600 -0.5958 33 1 -0.1716 -4.9873 -0.3204 34 1 0.0078 -1.9500 -2.3229 35 1 1.7186 -2.3761 -2.0745 36 1 1.8687 -3.2900 -4.3399 37 1 1.1980 -1.6403 -4.4354 38 1 -1.8831 -1.1488 -7.6730 39 1 -1.2572 0.4884 -7.1945 40 1 0.2302 -0.1854 -10.2867 41 1 2.5340 -0.9539 -10.6693 42 1 3.8116 -1.9794 -8.8300 43 1 2.7829 -2.2343 -6.6115 44 1 -0.0481 -5.2767 -4.5307 45 1 -1.7069 -4.6511 -4.7246 46 1 -1.1796 -5.3799 -2.3629 47 1 -1.6488 -3.6671 -2.4874 48 1 2.5478 -4.0499 -0.5987 49 1 1.7464 -4.2416 1.0187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941543860.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:43 Heat of formation + Delta-G solvation = 119.576634 kcal Electronic energy + Delta-G solvation = -30728.724392 eV Core-core repulsion = 26852.830374 eV Total energy + Delta-G solvation = -3875.894018 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.07982 -39.70847 -38.68573 -36.50071 -35.21772 -33.44487 -32.01317 -31.01961 -30.63038 -28.37480 -27.65544 -26.40205 -25.03393 -24.63243 -23.35146 -22.84808 -22.07866 -21.15941 -20.18195 -19.12036 -18.29812 -17.27424 -16.86061 -16.69011 -16.02622 -15.47911 -15.10104 -14.96824 -14.94024 -14.46609 -14.36880 -14.26176 -13.91002 -13.62864 -13.18916 -13.10711 -12.86278 -12.75344 -12.65095 -12.45196 -12.09863 -12.02844 -11.66138 -11.37602 -11.27243 -11.06151 -11.00016 -10.92461 -10.79963 -10.61397 -10.52961 -10.50002 -10.09783 -9.90619 -9.80572 -9.41940 -8.92650 -8.84476 -8.63225 -8.47564 -7.59251 -6.88222 -5.84544 -3.17563 1.17166 1.29302 2.66015 3.10692 3.32638 3.38327 3.39369 3.65792 4.07491 4.26943 4.35072 4.38974 4.40646 4.64611 4.91968 4.98796 5.13533 5.19401 5.26053 5.37080 5.40160 5.46662 5.48364 5.49893 5.51624 5.59473 5.67178 5.77033 5.80604 5.84431 5.91905 5.99475 6.01903 6.09912 6.17389 6.27010 6.28716 6.37747 6.47284 6.51678 6.61002 6.63223 6.75688 6.86369 6.92330 7.12162 7.18067 7.43410 7.53447 7.67908 7.80272 7.90097 8.26577 8.95742 9.62685 10.57348 11.31650 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010722 B = 0.003831 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.926399 B = 7306.495988 C = 8670.300048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.080 0.920 9 N -0.606 5.606 10 C 0.124 3.876 11 C 0.027 3.973 12 N -0.510 5.510 13 C 0.043 3.957 14 C 0.108 3.892 15 N -0.603 5.603 16 C 0.535 3.465 17 O -0.548 6.548 18 C -0.070 4.070 19 H 0.124 0.876 20 C -0.057 4.057 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.115 4.115 24 C -0.121 4.121 25 C -0.085 4.085 26 C -0.118 4.118 27 C 0.120 3.880 28 C 0.041 3.959 29 C 0.121 3.879 30 H 0.254 0.746 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.047 0.953 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 -5.347 -14.649 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.332 5.332 10 C -0.003 4.003 11 C -0.082 4.082 12 N -0.234 5.234 13 C -0.085 4.085 14 C -0.014 4.014 15 N -0.335 5.335 16 C 0.323 3.677 17 O -0.426 6.426 18 C -0.091 4.091 19 H 0.142 0.858 20 C -0.094 4.094 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.133 4.133 24 C -0.139 4.139 25 C -0.103 4.103 26 C -0.118 4.118 27 C -0.003 4.003 28 C -0.088 4.088 29 C -0.006 4.006 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.056 0.944 48 H 0.065 0.935 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.280 -5.546 -15.092 16.130 hybrid contribution 0.035 1.568 0.754 1.741 sum 1.315 -3.978 -14.338 14.937 Atomic orbital electron populations 1.69808 1.04969 1.25435 1.56080 1.24738 0.95538 0.97288 1.02336 0.86300 0.78601 0.83434 0.78055 1.20954 1.21611 1.21213 1.18839 0.90054 0.81480 1.44336 0.90226 1.45776 1.02421 0.99447 1.85551 1.22745 0.89331 0.91347 0.96886 1.23430 0.99447 0.98331 0.87040 1.61967 1.27609 1.27093 1.06740 1.22729 1.05383 0.88975 0.91442 1.22152 0.86063 0.99001 0.94231 1.48181 1.28556 1.22280 1.34469 1.19947 0.83302 0.85333 0.79136 1.90640 1.25898 1.69134 1.56917 1.21560 0.93130 0.96139 0.98268 0.85816 1.21827 0.95670 1.01824 0.90044 1.22248 0.97426 0.98314 0.93809 1.20274 0.94997 1.00891 0.95558 1.21000 0.94140 0.99038 0.99127 1.20977 0.99983 1.00291 0.92658 1.20387 0.93336 0.99190 0.97351 1.21713 0.93944 1.00054 0.96111 1.21681 1.00087 0.84766 0.93724 1.22406 0.91794 1.00841 0.93746 1.22505 0.95498 0.86283 0.96269 0.93621 0.95827 0.91004 0.90231 0.92570 0.85813 0.91279 0.89973 0.87362 0.88479 0.86399 0.85707 0.85562 0.86112 0.91102 0.89225 0.90186 0.94425 0.93515 0.94688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.57 11.50 55.49 0.64 -24.93 16 2 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 3 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.22 -5.68 9.52 -15.06 -0.14 -5.82 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.61 -14.24 2.17 -184.64 -0.40 -14.64 16 10 C 0.12 2.76 6.50 -8.38 -0.05 2.71 16 11 C 0.03 0.49 4.37 -67.47 -0.30 0.20 16 12 N -0.51 -8.59 4.77 -225.97 -1.08 -9.67 16 13 C 0.04 0.79 4.35 -3.70 -0.02 0.77 16 14 C 0.11 1.65 6.50 -3.60 -0.02 1.63 16 15 N -0.60 -9.26 3.01 -172.46 -0.52 -9.78 16 16 C 0.54 8.58 7.24 -10.99 -0.08 8.50 16 17 O -0.55 -10.07 15.15 5.56 0.08 -9.99 16 18 C -0.07 -0.97 2.96 -92.22 -0.27 -1.24 16 19 H 0.12 1.65 7.18 -51.93 -0.37 1.28 16 20 C -0.06 -0.70 7.77 -27.18 -0.21 -0.91 16 21 C -0.12 -1.50 7.49 -103.87 -0.78 -2.27 16 22 C -0.10 -1.10 10.03 -39.58 -0.40 -1.49 16 23 C -0.12 -1.15 10.04 -39.63 -0.40 -1.55 16 24 C -0.12 -1.27 10.04 -39.63 -0.40 -1.67 16 25 C -0.08 -1.03 10.03 -39.58 -0.40 -1.42 16 26 C -0.12 -1.57 6.87 -103.87 -0.71 -2.28 16 27 C 0.12 1.72 6.60 -3.61 -0.02 1.70 16 28 C 0.04 0.61 5.61 -3.70 -0.02 0.59 16 29 C 0.12 2.34 7.93 -8.52 -0.07 2.28 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.79 5.70 -51.93 -0.30 1.50 16 33 H 0.08 1.25 8.01 -51.93 -0.42 0.83 16 34 H 0.06 1.25 6.59 -51.93 -0.34 0.91 16 35 H 0.12 2.63 5.14 -51.93 -0.27 2.36 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.20 5.78 -51.93 -0.30 0.90 16 38 H 0.11 1.42 7.04 -51.93 -0.37 1.06 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.09 1.30 7.06 -51.93 -0.37 0.94 16 46 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 382.71 15.07 5.77 5.77 Total: -1.00 -30.16 382.71 -12.26 -42.42 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.34 Total: 5.23 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.39 Total: -0.43 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -1.36 Total: -59.01 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.16 -12.26 -42.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941543860.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.997 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds