Wall clock time and date at job start Wed Apr 1 2020 00:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 119.99974 * 2 1 4 4 H 1.48493 * 109.47449 * 265.00623 * 3 2 1 5 5 H 1.48497 * 109.46969 * 145.00106 * 3 2 1 6 6 H 1.48500 * 109.47095 * 25.00487 * 3 2 1 7 7 C 1.38818 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99889 * 189.17194 * 7 2 1 9 9 N 1.36941 * 119.99817 * 9.17236 * 7 2 1 10 10 C 1.48142 * 127.83913 * 15.57284 * 9 7 2 11 11 C 1.54790 * 104.41509 * 140.37064 * 10 9 7 12 12 H 1.08998 * 118.33444 * 244.39144 * 11 10 9 13 13 C 1.54285 * 104.92400 * 24.16506 * 11 10 9 14 14 H 1.08999 * 123.13657 * 221.44790 * 13 11 10 15 15 C 1.48144 * 127.83428 * 195.89790 * 9 7 2 16 16 C 1.52997 * 59.72323 * 113.94913 * 13 11 10 17 17 H 1.08999 * 117.44333 * 252.35653 * 16 13 11 18 18 N 1.46499 * 117.44399 * 107.61066 * 16 13 11 19 19 C 1.34773 * 120.00542 * 155.00256 * 18 16 13 20 20 O 1.21284 * 119.99556 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00204 * 180.02562 * 19 18 16 22 22 H 1.08997 * 110.28875 * 299.32172 * 21 19 18 23 23 C 1.54250 * 110.32568 * 61.45180 * 21 19 18 24 24 C 1.54382 * 105.06316 * 118.89475 * 23 21 19 25 25 N 1.48553 * 104.59246 * 23.85340 * 24 23 21 26 26 C 1.39674 * 111.00063 * 200.95931 * 25 24 23 27 27 C 1.38913 * 120.07588 * 119.84787 * 26 25 24 28 28 C 1.38107 * 119.92641 * 179.76710 * 27 26 25 29 29 C 1.38291 * 120.07082 * 0.51505 * 28 27 26 30 30 C 1.38283 * 120.15105 * 359.73740 * 29 28 27 31 31 C 1.38106 * 120.07416 * 0.02562 * 30 29 28 32 32 C 1.48563 * 104.22442 * 320.51720 * 25 24 23 33 33 H 0.96996 * 119.99851 * 359.97438 * 1 2 3 34 34 H 1.08999 * 110.41177 * 259.19810 * 10 9 7 35 35 H 1.08997 * 110.40919 * 21.63508 * 10 9 7 36 36 H 1.09003 * 110.40812 * 338.37060 * 15 9 7 37 37 H 1.09006 * 110.41037 * 100.79826 * 15 9 7 38 38 H 0.97001 * 119.99668 * 334.99962 * 18 16 13 39 39 H 1.09007 * 110.32460 * 237.79143 * 23 21 19 40 40 H 1.08997 * 110.32691 * 0.02562 * 23 21 19 41 41 H 1.09002 * 110.40861 * 142.62786 * 24 23 21 42 42 H 1.08997 * 110.41232 * 265.07434 * 24 23 21 43 43 H 1.08002 * 120.03519 * 0.02562 * 27 26 25 44 44 H 1.08001 * 119.96521 * 180.25283 * 28 27 26 45 45 H 1.08001 * 119.91955 * 179.72048 * 29 28 27 46 46 H 1.07999 * 119.96438 * 179.97438 * 30 29 28 47 47 H 1.07999 * 120.03237 * 179.97438 * 31 30 29 48 48 H 1.09002 * 110.40983 * 280.70455 * 32 25 24 49 49 H 1.08992 * 110.41558 * 158.26340 * 32 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6033 1.9855 -1.3947 5 1 3.4909 1.4729 0.8030 6 1 1.3988 2.6808 0.5918 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1485 9 7 1.3387 -2.3804 -0.1901 10 6 -0.0334 -2.5700 -0.7155 11 6 0.0714 -3.8179 -1.6254 12 1 -0.1091 -3.6961 -2.6934 13 6 1.2899 -4.5985 -1.0904 14 1 2.0252 -5.0736 -1.7399 15 6 1.8171 -3.7543 0.0899 16 6 -0.1156 -5.1929 -0.9808 17 1 -0.5713 -5.2259 0.0088 18 7 -0.4458 -6.3131 -1.8653 19 6 -1.4081 -7.1886 -1.5135 20 8 -2.0005 -7.0493 -0.4644 21 6 -1.7473 -8.3412 -2.4231 22 1 -2.0938 -7.9717 -3.3882 23 6 -0.5196 -9.2563 -2.6091 24 6 -0.9556 -10.6300 -2.0558 25 7 -2.4376 -10.6214 -2.1579 26 6 -3.0046 -11.5583 -1.2909 27 6 -3.8807 -11.1447 -0.2954 28 6 -4.4433 -12.0743 0.5571 29 6 -4.1269 -13.4142 0.4273 30 6 -3.2511 -13.8287 -0.5592 31 6 -2.6887 -12.9050 -1.4182 32 6 -2.8220 -9.2389 -1.7731 33 1 -0.4850 0.8400 0.0004 34 1 -0.7318 -2.7501 0.1016 35 1 -0.3418 -1.7003 -1.2956 36 1 2.9065 -3.7790 0.1183 37 1 1.4032 -4.1165 1.0311 38 1 0.0282 -6.4246 -2.7043 39 1 -0.2644 -9.3374 -3.6658 40 1 0.3283 -8.8721 -2.0421 41 1 -0.5375 -11.4339 -2.6616 42 1 -0.6468 -10.7364 -1.0159 43 1 -4.1250 -10.0978 -0.1910 44 1 -5.1277 -11.7539 1.3286 45 1 -4.5648 -14.1385 1.0982 46 1 -3.0058 -14.8759 -0.6576 47 1 -2.0044 -13.2294 -2.1882 48 1 -2.8053 -9.1276 -0.6889 49 1 -3.8091 -8.9955 -2.1659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960505627.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:00 Heat of formation + Delta-G solvation = 68.910242 kcal Electronic energy + Delta-G solvation = -28650.257615 eV Core-core repulsion = 24772.166537 eV Total energy + Delta-G solvation = -3878.091078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97622 -39.72834 -38.55592 -37.46070 -34.55798 -33.33416 -32.43165 -31.43213 -30.31664 -29.37483 -28.64275 -27.16848 -25.76476 -24.12824 -23.04818 -22.35171 -21.35434 -20.92214 -20.47639 -19.66723 -19.33176 -18.09288 -17.16471 -16.90521 -16.33244 -16.25723 -15.77319 -15.36842 -14.83190 -14.67329 -14.47937 -14.28329 -13.91074 -13.66672 -13.63222 -13.30572 -13.14961 -12.78992 -12.74475 -12.45957 -12.25645 -11.93453 -11.88275 -11.64274 -11.52315 -11.47036 -11.28320 -11.09200 -11.00693 -10.85005 -10.44231 -10.23380 -10.19271 -9.99810 -9.80779 -9.75021 -9.22314 -9.20540 -8.76933 -8.37780 -8.23898 -6.89719 -5.81843 -3.16688 1.08415 1.13634 2.52694 2.94527 3.36798 3.39312 3.42027 3.44021 3.72396 4.05017 4.17713 4.29501 4.44815 4.53103 4.64934 4.69726 4.81155 4.87162 4.94692 5.03543 5.11720 5.16533 5.17174 5.28678 5.32957 5.36227 5.38178 5.47181 5.52885 5.53669 5.57742 5.61708 5.75284 5.79782 5.85619 5.94273 6.09718 6.12863 6.20019 6.29160 6.44573 6.47990 6.54310 6.64857 6.75706 6.84624 6.97905 7.32929 7.49677 7.51641 7.69285 8.18103 8.19123 9.08395 9.71105 10.47900 11.32372 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.030287 B = 0.001803 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.278350 B =15526.401599 C =15862.155376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.178 4.178 12 H 0.102 0.898 13 C -0.183 4.183 14 H 0.103 0.897 15 C 0.155 3.845 16 C 0.094 3.906 17 H 0.131 0.869 18 N -0.695 5.695 19 C 0.521 3.479 20 O -0.536 6.536 21 C -0.115 4.115 22 H 0.111 0.889 23 C -0.118 4.118 24 C 0.040 3.960 25 N -0.468 5.468 26 C 0.100 3.900 27 C -0.165 4.165 28 C -0.095 4.095 29 C -0.146 4.146 30 C -0.101 4.101 31 C -0.136 4.136 32 C 0.042 3.958 33 H 0.255 0.745 34 H 0.027 0.973 35 H 0.091 0.909 36 H 0.052 0.948 37 H 0.026 0.974 38 H 0.399 0.601 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.888 -26.701 -6.342 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.199 4.199 12 H 0.120 0.880 13 C -0.204 4.204 14 H 0.121 0.879 15 C 0.028 3.972 16 C -0.012 4.012 17 H 0.148 0.852 18 N -0.343 5.343 19 C 0.307 3.693 20 O -0.412 6.412 21 C -0.137 4.137 22 H 0.129 0.871 23 C -0.156 4.156 24 C -0.086 4.086 25 N -0.183 5.183 26 C 0.002 3.998 27 C -0.185 4.185 28 C -0.114 4.114 29 C -0.164 4.164 30 C -0.119 4.119 31 C -0.156 4.156 32 C -0.085 4.085 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.233 0.767 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.150 0.850 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.101 0.899 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.476 -26.401 -6.113 27.647 hybrid contribution 0.839 0.954 0.063 1.272 sum -4.636 -25.447 -6.049 26.564 Atomic orbital electron populations 1.69896 1.05063 1.25535 1.55541 1.24921 0.95658 0.98038 1.01650 0.86113 0.78650 0.83117 0.77713 1.21452 1.20581 1.21607 1.18984 0.90818 0.82287 1.43582 0.90512 1.45184 1.13508 0.99988 1.72924 1.21136 0.86890 0.92454 0.93588 1.24814 1.01804 0.92885 1.00441 0.88007 1.24283 0.90188 1.02438 1.03501 0.87869 1.21125 0.97232 0.85951 0.92858 1.21869 0.98748 0.85018 0.95544 0.85160 1.45354 1.38295 1.27186 1.23442 1.20337 0.79320 0.82843 0.86793 1.90712 1.51256 1.74496 1.24754 1.22043 0.97278 0.94237 1.00124 0.87082 1.22376 0.96708 0.93615 1.02886 1.23185 0.86214 0.98320 1.00857 1.62545 1.06927 1.03732 1.45110 1.19091 0.97248 0.92534 0.90912 1.21473 1.00990 1.00581 0.95453 1.21063 0.98778 0.93087 0.98482 1.21105 0.99795 0.96002 0.99543 1.21016 0.96637 0.99223 0.95061 1.20781 1.02643 0.91341 1.00823 1.23246 0.98577 0.85537 1.01174 0.93471 0.95547 0.89074 0.92953 0.95588 0.76704 0.89531 0.90074 0.89205 0.92580 0.85032 0.85951 0.86228 0.85980 0.85895 0.89882 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 10.87 55.49 0.60 -26.14 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.81 29.56 -169.99 -5.03 16.78 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.32 10.35 -15.06 -0.16 -6.48 16 8 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 9 N -0.59 -15.09 3.37 -168.61 -0.57 -15.65 16 10 C 0.19 4.45 5.72 -2.20 -0.01 4.44 16 11 C -0.18 -3.31 7.08 -89.00 -0.63 -3.94 16 12 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 13 C -0.18 -3.12 7.06 -89.22 -0.63 -3.75 16 14 H 0.10 1.53 8.14 -51.93 -0.42 1.10 16 15 C 0.16 3.22 7.03 -2.41 -0.02 3.20 16 16 C 0.09 1.53 5.97 -67.93 -0.41 1.13 16 17 H 0.13 2.46 7.40 -51.93 -0.38 2.08 16 18 N -0.69 -8.65 5.43 -53.81 -0.29 -8.94 16 19 C 0.52 6.76 6.96 -10.99 -0.08 6.68 16 20 O -0.54 -9.20 15.02 5.55 0.08 -9.12 16 21 C -0.11 -1.05 3.45 -90.40 -0.31 -1.37 16 22 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 23 C -0.12 -0.85 6.57 -25.35 -0.17 -1.02 16 24 C 0.04 0.32 5.92 -2.18 -0.01 0.30 16 25 N -0.47 -4.46 5.43 -166.71 -0.91 -5.36 16 26 C 0.10 1.00 5.48 -83.79 -0.46 0.54 16 27 C -0.16 -1.67 8.82 -39.38 -0.35 -2.02 16 28 C -0.10 -0.86 10.04 -39.61 -0.40 -1.25 16 29 C -0.15 -1.18 10.04 -39.55 -0.40 -1.58 16 30 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 31 C -0.14 -1.20 9.37 -39.38 -0.37 -1.57 16 32 C 0.04 0.42 4.57 -2.18 -0.01 0.41 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.44 6.52 -51.93 -0.34 2.10 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.40 3.78 8.80 -40.82 -0.36 3.42 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.61 7.65 -51.93 -0.40 0.21 16 41 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 42 H 0.06 0.50 7.97 -51.93 -0.41 0.09 16 43 H 0.13 1.34 5.79 -52.49 -0.30 1.03 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.91 7.89 -52.49 -0.41 0.49 16 48 H 0.08 1.00 5.09 -51.93 -0.26 0.74 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -32.55 391.49 -12.59 -45.13 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.49 Total: 5.12 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -4.89 Total: -7.72 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -1.16 Total: -56.10 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.55 -12.59 -45.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960505627.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.043 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds