Wall clock time and date at job start Wed Apr 1 2020 00:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99631 * 2 1 4 4 H 1.48504 * 109.46660 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47362 * 300.00426 * 3 2 1 6 6 H 1.48498 * 109.47062 * 60.00924 * 3 2 1 7 7 C 1.38810 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99731 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99593 * 180.02562 * 9 7 2 11 11 C 1.53954 * 113.57744 * 155.00547 * 10 9 7 12 12 C 1.52909 * 86.78414 * 89.94439 * 11 10 9 13 13 C 1.52909 * 88.04133 * 24.90178 * 12 11 10 14 14 C 1.52910 * 121.13430 * 150.61617 * 12 11 10 15 15 C 1.53961 * 86.77969 * 100.82099 * 14 12 11 16 16 N 1.46497 * 113.57815 * 139.33529 * 15 14 12 17 17 C 1.34777 * 119.99525 * 154.99742 * 16 15 14 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 15 20 20 H 1.09000 * 115.55362 * 34.60723 * 19 17 16 21 21 C 1.53005 * 117.49752 * 248.90055 * 19 17 16 22 22 C 1.53000 * 59.99996 * 252.50802 * 21 19 17 23 23 H 1.09007 * 117.49621 * 107.48927 * 22 21 19 24 24 C 1.50700 * 117.51980 * 252.51729 * 22 21 19 25 25 C 1.38676 * 120.41404 * 188.34827 * 24 22 21 26 26 C 1.38628 * 118.41555 * 179.78246 * 25 24 22 27 27 C 1.38230 * 119.16257 * 0.47668 * 26 25 24 28 28 N 1.31854 * 120.76276 * 359.76231 * 27 26 25 29 29 C 1.31885 * 121.72290 * 0.02562 * 28 27 26 30 30 C 1.52904 * 121.13705 * 259.17746 * 12 11 10 31 31 H 0.96994 * 119.99709 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00257 * 0.02562 * 9 7 2 33 33 H 1.08993 * 112.82746 * 23.91037 * 10 9 7 34 34 H 1.09001 * 113.66252 * 335.46724 * 11 10 9 35 35 H 1.09005 * 113.74515 * 204.42930 * 11 10 9 36 36 H 1.08998 * 113.66577 * 89.57454 * 13 12 11 37 37 H 1.09001 * 113.65774 * 220.63041 * 13 12 11 38 38 H 1.08999 * 113.66200 * 346.35346 * 14 12 11 39 39 H 1.08997 * 113.66245 * 215.28806 * 14 12 11 40 40 H 1.09000 * 113.57513 * 270.04888 * 15 14 12 41 41 H 0.97000 * 120.00580 * 335.00488 * 16 15 14 42 42 H 1.08994 * 117.50050 * 359.97438 * 21 19 17 43 43 H 1.09004 * 117.49949 * 145.02287 * 21 19 17 44 44 H 1.07995 * 120.79842 * 0.02562 * 25 24 22 45 45 H 1.08004 * 120.42116 * 180.21964 * 26 25 24 46 46 H 1.07999 * 119.61896 * 179.74979 * 27 26 25 47 47 H 1.08003 * 119.61259 * 179.97438 * 29 28 27 48 48 H 1.09002 * 113.66414 * 144.70576 * 30 12 11 49 49 H 1.09005 * 113.66179 * 13.65860 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.2586 -4.8295 0.5957 12 6 0.7434 -5.0858 -0.8210 13 6 2.0050 -4.4006 -1.3474 14 6 0.3579 -6.4927 -1.2796 15 6 -1.1048 -6.0755 -1.0415 16 7 -2.0267 -6.5558 -2.0738 17 6 -3.3322 -6.7253 -1.7852 18 8 -3.7440 -6.4798 -0.6712 19 6 -4.2817 -7.2135 -2.8488 20 1 -3.8650 -7.9275 -3.5592 21 6 -5.3267 -6.2252 -3.3705 22 6 -5.7524 -7.3795 -2.4609 23 1 -6.0332 -7.1355 -1.4362 24 6 -6.5139 -8.5175 -3.0901 25 6 -7.0779 -9.5071 -2.2990 26 6 -7.7734 -10.5324 -2.9210 27 6 -7.8724 -10.5395 -4.2997 28 7 -7.3190 -9.5842 -5.0206 29 6 -6.6537 -8.5915 -4.4627 30 6 -0.6477 -4.6207 -1.2526 31 1 -0.4849 0.8400 0.0004 32 1 0.3557 -2.3881 -0.0005 33 1 3.0649 -3.5637 0.4066 34 1 0.4817 -4.5190 1.2943 35 1 1.8832 -5.6330 0.9861 36 1 2.8406 -5.0828 -1.5037 37 1 1.8242 -3.7474 -2.2010 38 1 0.7025 -7.2808 -0.6102 39 1 0.5914 -6.6911 -2.3256 40 1 -1.4577 -6.2807 -0.0308 41 1 -1.6975 -6.7519 -2.9649 42 1 -5.3278 -5.2221 -2.9442 43 1 -5.5977 -6.2888 -4.4244 44 1 -6.9810 -9.4777 -1.2238 45 1 -8.2287 -11.3179 -2.3360 46 1 -8.4091 -11.3369 -4.7922 47 1 -6.2136 -7.8271 -5.0860 48 1 -0.6968 -4.2929 -2.2910 49 1 -1.1064 -3.9133 -0.5616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965228856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:18 Heat of formation + Delta-G solvation = 58.086851 kcal Electronic energy + Delta-G solvation = -28210.020637 eV Core-core repulsion = 24331.460222 eV Total energy + Delta-G solvation = -3878.560415 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.82214 -41.35256 -40.40788 -37.87114 -37.00006 -35.19029 -33.62976 -33.32883 -31.82022 -31.36104 -26.85662 -26.64621 -26.41513 -25.71876 -25.28622 -24.34668 -23.42677 -21.91832 -21.39057 -21.00880 -19.30050 -18.90475 -18.54084 -18.04060 -17.39927 -16.99837 -16.73034 -16.30831 -16.30575 -15.84658 -15.68766 -15.51752 -15.18739 -15.02212 -14.82856 -14.43101 -13.97556 -13.83191 -13.70925 -13.54567 -13.53200 -13.09389 -13.02236 -12.98890 -12.82676 -12.71245 -12.48626 -12.16467 -12.09387 -12.01983 -11.75491 -11.56910 -11.30763 -11.08322 -10.97949 -10.82111 -10.68514 -10.57024 -10.39917 -9.99805 -9.78428 -8.98322 -7.95266 -5.23354 0.08940 0.31710 1.43922 1.45945 1.46786 1.57019 2.11889 2.55015 2.65602 3.03687 3.35960 3.37168 3.52649 3.57206 3.61535 3.66010 3.70424 3.78581 3.86655 3.93020 4.01150 4.02616 4.08850 4.12351 4.16160 4.35012 4.36320 4.49986 4.57324 4.71904 4.78002 4.80096 4.88644 4.90303 4.93383 4.96317 4.98277 5.03194 5.10008 5.13135 5.17253 5.21618 5.35098 5.36557 5.44169 5.60184 5.61259 5.71018 5.75774 6.28475 6.56544 7.01270 7.24298 7.32858 8.12882 8.34296 9.28446 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019301 B = 0.001845 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.355274 B =15170.539737 C =15992.669606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.720 5.720 10 C 0.141 3.859 11 C -0.126 4.126 12 C -0.088 4.088 13 C -0.142 4.142 14 C -0.105 4.105 15 C 0.129 3.871 16 N -0.700 5.700 17 C 0.535 3.465 18 O -0.588 6.588 19 C -0.171 4.171 20 H 0.153 0.847 21 C -0.133 4.133 22 C -0.085 4.085 23 H 0.110 0.890 24 C -0.108 4.108 25 C -0.079 4.079 26 C -0.165 4.165 27 C 0.082 3.918 28 N -0.509 5.509 29 C 0.090 3.910 30 C -0.126 4.126 31 H 0.249 0.751 32 H 0.373 0.627 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.043 0.957 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.418 0.582 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.144 0.856 45 H 0.163 0.837 46 H 0.178 0.822 47 H 0.170 0.830 48 H 0.081 0.919 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.677 -25.496 -9.991 29.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.359 5.359 10 C 0.032 3.968 11 C -0.165 4.165 12 C -0.089 4.089 13 C -0.182 4.182 14 C -0.143 4.143 15 C 0.024 3.976 16 N -0.350 5.350 17 C 0.323 3.677 18 O -0.468 6.468 19 C -0.192 4.192 20 H 0.170 0.830 21 C -0.170 4.170 22 C -0.104 4.104 23 H 0.128 0.872 24 C -0.109 4.109 25 C -0.105 4.105 26 C -0.185 4.185 27 C -0.074 4.074 28 N -0.218 5.218 29 C -0.066 4.066 30 C -0.165 4.165 31 H 0.058 0.942 32 H 0.206 0.794 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.109 0.891 41 H 0.255 0.745 42 H 0.114 0.886 43 H 0.155 0.845 44 H 0.161 0.839 45 H 0.180 0.820 46 H 0.195 0.805 47 H 0.187 0.813 48 H 0.100 0.900 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.868 -25.230 -10.109 29.272 hybrid contribution 0.040 1.528 0.943 1.796 sum -10.827 -23.703 -9.166 27.624 Atomic orbital electron populations 1.69850 1.06706 1.25858 1.59850 1.25589 0.96363 1.01182 1.04030 0.85056 0.78343 0.79781 0.76495 1.18762 1.22198 1.22293 1.19757 0.91588 0.85222 1.40519 0.90341 1.42362 1.05391 1.00623 1.87503 1.21477 0.94822 0.84910 0.95633 1.23176 0.99580 0.98855 0.94840 1.21967 0.93566 0.96400 0.96929 1.23446 0.97360 0.98902 0.98517 1.23106 0.91813 0.95910 1.03462 1.22393 0.89217 0.93554 0.92479 1.45824 1.07324 1.66409 1.15426 1.20216 0.83167 0.76119 0.88157 1.90700 1.77860 1.53015 1.25272 1.22370 0.89896 1.05871 1.01065 0.82970 1.23253 0.98010 0.94381 1.01322 1.20847 0.93047 0.96261 1.00282 0.87225 1.20106 0.99774 0.96185 0.94881 1.21759 0.94471 0.92828 1.01413 1.22458 0.99803 0.99879 0.96316 1.23274 0.95963 0.96468 0.91722 1.67751 1.09140 1.03092 1.41774 1.22928 0.95380 0.96104 0.92216 1.23093 0.95838 0.96543 1.00988 0.94185 0.79442 0.92190 0.93744 0.86901 0.87894 0.93784 0.89041 0.87288 0.89102 0.74496 0.88648 0.84493 0.83864 0.81967 0.80450 0.81266 0.90015 0.94812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.99 13.06 21.65 0.28 -60.71 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 46.87 29.55 68.60 2.03 48.89 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 7 C -0.24 -13.45 9.97 84.03 0.84 -12.61 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.72 -36.95 5.31 -319.92 -1.70 -38.65 16 10 C 0.14 5.53 4.55 45.63 0.21 5.74 16 11 C -0.13 -4.01 7.59 30.89 0.23 -3.78 16 12 C -0.09 -2.53 1.02 -52.32 -0.05 -2.59 16 13 C -0.14 -4.50 7.64 30.89 0.24 -4.26 16 14 C -0.11 -2.13 7.59 30.89 0.23 -1.90 16 15 C 0.13 3.32 4.24 45.63 0.19 3.51 16 16 N -0.70 -14.60 5.35 -439.51 -2.35 -16.95 16 17 C 0.54 13.14 7.61 87.66 0.67 13.81 16 18 O -0.59 -20.26 15.86 -3.04 -0.05 -20.31 16 19 C -0.17 -2.79 5.83 -11.54 -0.07 -2.86 16 20 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 21 C -0.13 -1.96 9.57 30.60 0.29 -1.67 16 22 C -0.08 -1.46 5.57 -11.54 -0.06 -1.53 16 23 H 0.11 2.36 7.67 -2.38 -0.02 2.34 16 24 C -0.11 -1.67 5.62 -19.78 -0.11 -1.78 16 25 C -0.08 -1.10 9.89 22.47 0.22 -0.88 16 26 C -0.17 -1.83 10.11 22.36 0.23 -1.61 16 27 C 0.08 1.06 11.18 84.69 0.95 2.01 16 28 N -0.51 -8.82 10.36 -195.85 -2.03 -10.85 16 29 C 0.09 1.38 10.47 84.67 0.89 2.26 16 30 C -0.13 -4.10 7.18 30.88 0.22 -3.87 16 31 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.37 20.82 6.77 -92.71 -0.63 20.19 16 33 H 0.06 2.32 8.10 -2.39 -0.02 2.30 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.11 1.71 8.12 -2.39 -0.02 1.69 16 40 H 0.09 2.79 7.47 -2.39 -0.02 2.77 16 41 H 0.42 5.72 8.73 -92.71 -0.81 4.92 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.14 1.25 6.21 -2.38 -0.01 1.23 16 44 H 0.14 1.72 8.06 -2.91 -0.02 1.69 16 45 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 46 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.17 1.86 6.04 -2.91 -0.02 1.84 16 48 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 49 H 0.03 1.38 7.47 -2.38 -0.02 1.36 16 Total: -1.00 -77.15 403.99 1.30 -75.85 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.46 Total: 38.92 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 5.58 Total: -16.20 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -5.80 Total: -127.15 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.05 Total: -20.31 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.89 kcal Total: -77.15 1.30 -75.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965228856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.938 kcal (2) G-P(sol) polarization free energy of solvation -77.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds