Wall clock time and date at job start Wed Apr 1 2020 00:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00314 * 2 1 4 4 H 1.48502 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47398 * 299.99579 * 3 2 1 6 6 H 1.48500 * 109.47417 * 59.99635 * 3 2 1 7 7 C 1.38812 * 119.99562 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99977 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00038 * 180.02562 * 9 7 2 11 11 C 1.53940 * 113.58067 * 204.99845 * 10 9 7 12 12 C 1.52905 * 86.78782 * 220.66369 * 11 10 9 13 13 C 1.52910 * 88.03733 * 24.89801 * 12 11 10 14 14 C 1.52904 * 121.14213 * 150.61642 * 12 11 10 15 15 C 1.53957 * 86.78105 * 100.82198 * 14 12 11 16 16 N 1.46497 * 113.58135 * 270.13298 * 15 14 12 17 17 C 1.34778 * 120.00199 * 205.00129 * 16 15 14 18 18 O 1.21284 * 119.99877 * 359.97438 * 17 16 15 19 19 C 1.50693 * 120.00281 * 180.02562 * 17 16 15 20 20 H 1.09004 * 110.72792 * 300.70059 * 19 17 16 21 21 C 1.54372 * 110.82493 * 177.29297 * 19 17 16 22 22 C 1.51533 * 104.96726 * 215.62457 * 21 19 17 23 23 C 1.38739 * 130.60851 * 197.05438 * 22 21 19 24 24 C 1.38574 * 118.55844 * 179.79107 * 23 22 21 25 25 C 1.38228 * 118.98811 * 359.97438 * 24 23 22 26 26 N 1.31690 * 120.80137 * 0.02562 * 25 24 23 27 27 C 1.32294 * 122.03224 * 359.97438 * 26 25 24 28 28 C 1.51477 * 130.14603 * 179.97438 * 27 26 25 29 29 C 1.52914 * 121.13770 * 259.18710 * 12 11 10 30 30 H 0.97002 * 119.99305 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00036 * 359.97438 * 9 7 2 32 32 H 1.09003 * 112.87619 * 336.14047 * 10 9 7 33 33 H 1.09004 * 113.66349 * 106.19068 * 11 10 9 34 34 H 1.09000 * 113.75212 * 335.14952 * 11 10 9 35 35 H 1.09003 * 113.66021 * 89.57815 * 13 12 11 36 36 H 1.09001 * 113.66716 * 220.62670 * 13 12 11 37 37 H 1.09003 * 113.66244 * 346.35405 * 14 12 11 38 38 H 1.08997 * 113.66842 * 215.29629 * 14 12 11 39 39 H 1.08998 * 113.57948 * 139.33665 * 15 14 12 40 40 H 0.96996 * 120.00117 * 24.99478 * 16 15 14 41 41 H 1.09002 * 110.31023 * 334.39291 * 21 19 17 42 42 H 1.08995 * 110.31222 * 96.56803 * 21 19 17 43 43 H 1.08003 * 120.72168 * 359.75778 * 23 22 21 44 44 H 1.08000 * 120.50858 * 179.97438 * 24 23 22 45 45 H 1.07997 * 119.59992 * 180.02562 * 25 24 23 46 46 H 1.09008 * 110.29218 * 43.89036 * 28 27 26 47 47 H 1.08997 * 110.29749 * 281.76190 * 28 27 26 48 48 H 1.08993 * 113.66382 * 144.70253 * 29 12 11 49 49 H 1.08992 * 113.66018 * 13.64281 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6569 0.0017 11 6 1.2588 -4.8298 -0.5946 12 6 1.8325 -5.6834 0.5367 13 6 2.0017 -4.3992 1.3492 14 6 1.0588 -6.8773 1.0970 15 6 1.9755 -7.7650 0.2357 16 7 1.4545 -8.0131 -1.1108 17 6 1.8321 -9.1162 -1.7869 18 8 2.6036 -9.9032 -1.2807 19 6 1.2966 -9.3711 -3.1722 20 1 0.2086 -9.4364 -3.1592 21 6 1.9161 -10.6510 -3.7731 22 6 2.0743 -10.3528 -5.2504 23 6 2.2758 -11.2044 -6.3270 24 6 2.3835 -10.6554 -7.5948 25 6 2.2862 -9.2844 -7.7415 26 7 2.0947 -8.5062 -6.6965 27 6 1.9867 -8.9916 -5.4706 28 6 1.7680 -8.2770 -4.1530 29 6 3.0111 -6.6274 0.2954 30 1 -0.4849 0.8401 -0.0004 31 1 0.3554 -2.3880 0.0005 32 1 3.0655 -3.5649 -0.4038 33 1 1.5982 -5.1314 -1.5856 34 1 0.1782 -4.6983 -0.5386 35 1 1.1302 -4.1452 1.9526 36 1 2.9347 -4.3567 1.9113 37 1 0.0127 -6.9029 0.7918 38 1 1.1922 -7.0210 2.1692 39 1 2.2990 -8.6759 0.7394 40 1 0.8377 -7.3835 -1.5158 41 1 2.8882 -10.8488 -3.3216 42 1 1.2491 -11.5001 -3.6242 43 1 2.3478 -12.2720 -6.1801 44 1 2.5411 -11.2890 -8.4551 45 1 2.3683 -8.8460 -8.7251 46 1 1.0009 -7.5101 -4.2617 47 1 2.7004 -7.8334 -3.8041 48 1 3.6933 -6.7008 1.1423 49 1 3.5246 -6.4532 -0.6501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000965885583.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:50 Heat of formation + Delta-G solvation = 50.730580 kcal Electronic energy + Delta-G solvation = -28823.059916 eV Core-core repulsion = 24944.180509 eV Total energy + Delta-G solvation = -3878.879407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31686 -40.58900 -39.24653 -36.35424 -35.74677 -33.57611 -32.97539 -32.24232 -30.01149 -29.45017 -28.15892 -25.78870 -25.38038 -24.90972 -24.08448 -22.61260 -22.19230 -21.72808 -20.25918 -19.87542 -17.92345 -17.68804 -17.03980 -16.97148 -16.71070 -16.09017 -15.51572 -15.30990 -15.15353 -14.74318 -14.54990 -14.14365 -14.00771 -13.62658 -13.59876 -13.28653 -13.20570 -13.17984 -12.84350 -12.56804 -12.39434 -12.07056 -11.98789 -11.76920 -11.72511 -11.63166 -11.25063 -11.02754 -10.86663 -10.78235 -10.19415 -10.13248 -10.04763 -10.00126 -9.81828 -9.74188 -9.61152 -9.36755 -9.07858 -9.04152 -8.86360 -6.95469 -5.78745 -3.06976 0.75102 0.94865 2.36099 2.90523 3.42471 3.42752 3.48541 3.50493 3.56989 4.02963 4.27055 4.43965 4.52745 4.56249 4.57769 4.59634 4.69583 4.76739 4.79636 4.84715 4.90194 4.94315 5.20259 5.31172 5.32740 5.39768 5.41679 5.46129 5.59303 5.63936 5.69595 5.77387 5.80837 5.81750 5.87510 5.88213 5.93212 5.94403 6.05766 6.15822 6.22597 6.28371 6.35622 6.38787 6.52439 6.64522 6.92687 7.12647 7.34235 7.68258 7.70283 8.01513 8.40254 9.51411 10.09799 10.43977 11.43815 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.002301 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.372644 B =12164.489626 C =14009.860927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.170 3.830 11 C -0.131 4.131 12 C -0.105 4.105 13 C -0.152 4.152 14 C -0.132 4.132 15 C 0.120 3.880 16 N -0.704 5.704 17 C 0.527 3.473 18 O -0.538 6.538 19 C -0.111 4.111 20 H 0.113 0.887 21 C -0.062 4.062 22 C -0.147 4.147 23 C -0.064 4.064 24 C -0.174 4.174 25 C 0.102 3.898 26 N -0.476 5.476 27 C 0.122 3.878 28 C -0.062 4.062 29 C -0.125 4.125 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.405 0.595 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.133 0.867 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -25.630 -9.558 27.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.058 3.942 11 C -0.170 4.170 12 C -0.106 4.106 13 C -0.193 4.193 14 C -0.170 4.170 15 C 0.015 3.985 16 N -0.354 5.354 17 C 0.313 3.687 18 O -0.415 6.415 19 C -0.132 4.132 20 H 0.131 0.869 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.090 4.090 24 C -0.194 4.194 25 C -0.055 4.055 26 N -0.185 5.185 27 C -0.015 4.015 28 C -0.100 4.100 29 C -0.164 4.164 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.117 0.883 40 H 0.240 0.760 41 H 0.121 0.879 42 H 0.103 0.897 43 H 0.151 0.849 44 H 0.155 0.845 45 H 0.175 0.825 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.108 0.892 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.401 -25.102 -9.335 26.888 hybrid contribution -0.142 0.362 -0.157 0.420 sum 2.259 -24.740 -9.492 26.594 Atomic orbital electron populations 1.69671 1.05116 1.25571 1.57773 1.24758 0.95532 0.97764 1.02969 0.86128 0.78829 0.84132 0.77180 1.20540 1.21855 1.21883 1.19347 0.91092 0.84249 1.42513 0.91098 1.42419 1.05708 0.99930 1.87070 1.21504 0.95121 0.84737 0.92847 1.23224 1.00562 0.97159 0.96019 1.22338 0.96318 0.92663 0.99243 1.23651 1.01125 0.94814 0.99713 1.23151 0.98697 0.95447 0.99683 1.21911 0.95858 0.98075 0.82677 1.45698 1.48420 1.24264 1.17040 1.20188 0.80828 0.80936 0.86762 1.90697 1.35086 1.46281 1.69462 1.22000 1.02425 0.96798 0.92010 0.86944 1.20900 1.03296 0.96676 0.89115 1.21533 1.01292 0.95539 0.96505 1.21067 0.96322 1.00168 0.91469 1.22089 1.02533 0.96910 0.97893 1.22671 0.95387 0.90309 0.97173 1.66863 1.11894 1.41203 0.98509 1.21693 0.95278 0.91996 0.92580 1.20916 1.03713 0.96982 0.88396 1.23115 0.96117 0.94746 1.02406 0.93554 0.78154 0.90890 0.92319 0.90092 0.90357 0.92707 0.91064 0.88914 0.88333 0.76010 0.87908 0.89750 0.84906 0.84504 0.82472 0.88455 0.88534 0.89190 0.91126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.54 5.40 -52.48 -0.28 -17.83 16 10 C 0.17 3.25 4.48 -66.95 -0.30 2.95 16 11 C -0.13 -1.95 6.93 -26.29 -0.18 -2.13 16 12 C -0.10 -1.36 1.02 -154.71 -0.16 -1.52 16 13 C -0.15 -2.51 7.64 -26.28 -0.20 -2.72 16 14 C -0.13 -1.43 7.59 -26.28 -0.20 -1.63 16 15 C 0.12 1.29 4.32 -66.94 -0.29 1.01 16 16 N -0.70 -6.84 5.24 -52.85 -0.28 -7.11 16 17 C 0.53 5.51 7.05 -10.99 -0.08 5.44 16 18 O -0.54 -7.45 15.13 5.55 0.08 -7.37 16 19 C -0.11 -0.89 3.45 -90.37 -0.31 -1.20 16 20 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.06 -0.51 6.11 -26.75 -0.16 -0.68 16 22 C -0.15 -1.33 6.16 -104.05 -0.64 -1.97 16 23 C -0.06 -0.49 10.17 -39.27 -0.40 -0.89 16 24 C -0.17 -1.23 10.12 -39.46 -0.40 -1.63 16 25 C 0.10 0.89 11.18 -17.62 -0.20 0.69 16 26 N -0.48 -5.45 10.35 -9.19 -0.10 -5.55 16 27 C 0.12 1.28 7.32 -82.04 -0.60 0.68 16 28 C -0.06 -0.55 6.30 -26.81 -0.17 -0.72 16 29 C -0.13 -1.48 7.64 -26.28 -0.20 -1.68 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 10.01 7.92 -40.82 -0.32 9.69 16 32 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 33 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 1.14 7.47 -51.93 -0.39 0.75 16 40 H 0.40 3.41 8.01 -40.82 -0.33 3.08 16 41 H 0.10 1.00 7.02 -51.93 -0.36 0.64 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 44 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.16 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 47 H 0.10 0.92 7.89 -51.93 -0.41 0.51 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -33.26 399.20 -11.28 -44.55 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.69 Total: 10.53 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -4.74 Total: -13.30 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.07 Total: -57.73 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.08 Total: -7.37 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.26 -11.28 -44.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965885583.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.279 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds