Wall clock time and date at job start Wed Apr 1 2020 01:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48503 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46942 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47155 * 60.00030 * 3 2 1 7 7 C 1.38817 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00072 * 164.49490 * 7 2 1 9 9 N 1.36934 * 119.99943 * 344.48854 * 7 2 1 10 10 C 1.47605 * 118.64197 * 331.70446 * 9 7 2 11 11 C 1.53949 * 112.14031 * 222.11226 * 10 9 7 12 12 C 1.50876 * 110.09539 * 40.55890 * 11 10 9 13 13 C 1.52561 * 109.35171 * 268.11064 * 12 11 10 14 14 C 1.47096 * 114.32957 * 85.03020 * 13 12 11 15 15 C 1.44584 * 118.63860 * 151.68078 * 9 7 2 16 16 H 1.09002 * 109.44721 * 209.34874 * 15 9 7 17 17 C 1.52999 * 109.44894 * 329.26248 * 15 9 7 18 18 N 1.46496 * 109.47512 * 305.00431 * 17 15 9 19 19 C 1.34775 * 120.00225 * 179.97438 * 18 17 15 20 20 O 1.21783 * 120.00039 * 359.97438 * 19 18 17 21 21 C 1.46205 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.41738 * 126.79867 * 359.67890 * 21 19 18 23 23 C 1.34520 * 107.77614 * 179.83362 * 22 21 19 24 24 N 1.36957 * 109.60239 * 0.44577 * 23 22 21 25 25 C 1.36709 * 131.35363 * 179.69104 * 24 23 22 26 26 C 1.35004 * 120.75547 * 179.97438 * 25 24 23 27 27 C 1.40308 * 120.37892 * 0.03821 * 26 25 24 28 28 C 1.36338 * 119.46001 * 359.97438 * 27 26 25 29 29 C 1.36939 * 108.74081 * 359.71827 * 24 23 22 30 30 H 0.96998 * 119.99575 * 359.97438 * 1 2 3 31 31 H 1.08993 * 108.94714 * 342.79467 * 10 9 7 32 32 H 1.08998 * 108.95055 * 101.52021 * 10 9 7 33 33 H 1.09002 * 109.36826 * 160.75328 * 11 10 9 34 34 H 1.08998 * 109.36789 * 280.49444 * 11 10 9 35 35 H 1.08997 * 109.49036 * 28.07736 * 12 11 10 36 36 H 1.09008 * 109.49067 * 148.12227 * 12 11 10 37 37 H 1.08996 * 108.51103 * 206.28211 * 13 12 11 38 38 H 1.08991 * 108.51186 * 323.92897 * 13 12 11 39 39 H 1.08994 * 109.33048 * 176.93281 * 14 13 12 40 40 H 1.09002 * 109.32931 * 57.45136 * 14 13 12 41 41 H 1.09000 * 109.46463 * 65.00369 * 17 15 9 42 42 H 1.08997 * 109.47271 * 185.00011 * 17 15 9 43 43 H 0.97007 * 120.00065 * 359.97438 * 18 17 15 44 44 H 1.08002 * 126.11254 * 359.97438 * 22 21 19 45 45 H 1.08001 * 125.19886 * 180.16792 * 23 22 21 46 46 H 1.07995 * 119.62131 * 0.02562 * 25 24 23 47 47 H 1.07997 * 119.80797 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.27058 * 180.02562 * 27 26 25 49 49 H 1.07996 * 120.34271 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2506 9 7 1.3629 -2.3666 0.3161 10 6 0.2008 -2.3057 1.2242 11 6 0.2095 -3.4491 2.2550 12 6 1.6118 -3.6795 2.7618 13 6 2.2912 -4.7421 1.9035 14 6 2.9176 -4.2221 0.6783 15 6 1.8456 -3.6048 -0.2534 16 1 1.0150 -4.3021 -0.3629 17 6 2.4620 -3.3280 -1.6261 18 7 1.4836 -2.6385 -2.4708 19 6 1.8081 -2.2912 -3.7319 20 8 2.9148 -2.5501 -4.1692 21 6 0.8318 -1.6026 -4.5747 22 6 -0.4904 -1.2374 -4.2176 23 6 -1.0466 -0.6217 -5.2765 24 7 -0.1471 -0.5800 -6.3084 25 6 -0.2462 -0.0699 -7.5729 26 6 0.7930 -0.1458 -8.4314 27 6 1.9955 -0.7524 -8.0380 28 6 2.1075 -1.2654 -6.7797 29 6 1.0165 -1.1770 -5.9023 30 1 -0.4849 0.8401 0.0004 31 1 0.2143 -1.3526 1.7527 32 1 -0.7133 -2.3700 0.6341 33 1 -0.4385 -3.1867 3.0913 34 1 -0.1578 -4.3617 1.7857 35 1 2.1768 -2.7493 2.7040 36 1 1.5733 -4.0179 3.7973 37 1 3.0581 -5.2327 2.5028 38 1 1.5468 -5.4860 1.6200 39 1 3.4225 -5.0358 0.1579 40 1 3.6486 -3.4581 0.9432 41 1 3.3457 -2.7010 -1.5077 42 1 2.7455 -4.2708 -2.0939 43 1 0.6021 -2.4320 -2.1224 44 1 -0.9655 -1.4188 -3.2649 45 1 -2.0506 -0.2253 -5.3094 46 1 -1.1660 0.3998 -7.8885 47 1 0.6981 0.2626 -9.4266 48 1 2.8259 -0.8118 -8.7260 49 1 3.0263 -1.7358 -6.4621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968944003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:05 Heat of formation + Delta-G solvation = 57.052331 kcal Electronic energy + Delta-G solvation = -30690.269224 eV Core-core repulsion = 26811.663949 eV Total energy + Delta-G solvation = -3878.605275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.05071 -38.83010 -37.79266 -36.39506 -34.32915 -33.36974 -32.78487 -31.62327 -30.63919 -29.80015 -28.06418 -26.73109 -25.54332 -23.58788 -23.41815 -23.02500 -21.50370 -21.22301 -19.84997 -19.19040 -19.07821 -17.63575 -16.61607 -16.09489 -15.68552 -15.50198 -15.33269 -15.29592 -14.78465 -14.55610 -14.17945 -14.13030 -13.84433 -13.51970 -13.40379 -12.98571 -12.68251 -12.59919 -12.43848 -12.01383 -11.89016 -11.68820 -11.53198 -11.41386 -11.24268 -11.14907 -11.02374 -10.80386 -10.51984 -10.15924 -10.14293 -9.97983 -9.93462 -9.65052 -9.53339 -9.46760 -9.09913 -8.48406 -8.36511 -8.02453 -7.13677 -6.63459 -5.77059 -3.20192 0.86167 1.36181 2.73617 2.78539 3.39493 3.48487 3.48869 3.51533 4.16591 4.34961 4.52600 4.54608 4.85873 4.87075 5.09563 5.22017 5.26362 5.40487 5.41136 5.48731 5.55673 5.69848 5.71201 5.83455 5.95270 5.99743 6.03794 6.08263 6.15856 6.21310 6.30220 6.38357 6.42174 6.47131 6.52205 6.62621 6.68969 6.70395 6.76805 6.82447 6.88562 6.95976 7.03748 7.06018 7.16266 7.36961 7.43204 7.48884 7.69837 7.89411 8.48696 8.58672 9.19175 9.26716 9.91004 10.36223 11.30108 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.003668 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.173447 B = 7632.161570 C = 8407.006532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.015 3.985 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.100 4.100 14 C -0.137 4.137 15 C 0.174 3.826 16 H 0.043 0.957 17 C 0.132 3.868 18 N -0.685 5.685 19 C 0.587 3.413 20 O -0.579 6.579 21 C -0.221 4.221 22 C -0.090 4.090 23 C -0.071 4.071 24 N -0.341 5.341 25 C 0.045 3.955 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.070 4.070 29 C 0.098 3.902 30 H 0.251 0.749 31 H 0.072 0.928 32 H 0.024 0.976 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.410 0.590 44 H 0.159 0.841 45 H 0.170 0.830 46 H 0.159 0.841 47 H 0.143 0.857 48 H 0.133 0.867 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.949 -3.972 -9.901 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.184 4.184 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.057 3.943 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.065 3.935 16 H 0.061 0.939 17 C 0.007 3.993 18 N -0.333 5.333 19 C 0.375 3.625 20 O -0.462 6.462 21 C -0.230 4.230 22 C -0.112 4.112 23 C -0.196 4.196 24 N -0.005 5.005 25 C -0.076 4.076 26 C -0.168 4.168 27 C -0.154 4.154 28 C -0.089 4.089 29 C -0.010 4.010 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.247 0.753 44 H 0.176 0.824 45 H 0.188 0.812 46 H 0.177 0.823 47 H 0.161 0.839 48 H 0.151 0.849 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.482 -3.917 -10.313 11.308 hybrid contribution -0.097 1.294 0.275 1.327 sum -2.580 -2.623 -10.038 10.691 Atomic orbital electron populations 1.70026 1.04913 1.25099 1.54547 1.24867 0.95113 0.97801 1.00625 0.86421 0.79740 0.84847 0.77019 1.20428 1.21939 1.21825 1.19048 0.92293 0.84587 1.41607 0.91956 1.43719 1.34380 1.01694 1.50709 1.20978 0.88589 0.95414 0.89362 1.22071 0.96055 1.00512 0.99560 1.20944 0.97117 0.99820 0.96523 1.20284 0.98967 0.97895 0.96641 1.21374 0.99712 0.99758 0.96900 1.20506 0.93965 0.89362 0.89701 0.93855 1.21425 0.92638 0.95095 0.90134 1.45417 1.18289 1.58111 1.11488 1.16914 0.85882 0.78124 0.81576 1.90691 1.22895 1.57988 1.74626 1.19543 0.96694 1.13283 0.93503 1.21223 0.93575 0.97932 0.98440 1.21659 0.96749 1.13674 0.87492 1.41504 1.12195 1.37208 1.09613 1.21604 1.01408 1.01218 0.83368 1.20686 0.93113 1.02966 1.00046 1.21035 0.97980 0.99846 0.96491 1.20891 0.97813 0.98221 0.92005 1.18635 0.87009 1.00813 0.94549 0.93929 0.90956 0.95820 0.93322 0.93821 0.90778 0.94274 0.94158 0.93563 0.93331 0.91849 0.91552 0.93380 0.75340 0.82353 0.81248 0.82343 0.83947 0.84875 0.82817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.61 11.14 55.49 0.62 -22.99 16 2 C 0.01 0.38 4.86 -17.43 -0.08 0.29 16 3 Si 0.89 21.71 29.58 -169.99 -5.03 16.69 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.25 -6.11 7.62 -15.06 -0.11 -6.22 16 8 H 0.06 1.64 6.74 -52.49 -0.35 1.29 16 9 N -0.58 -12.73 1.77 -164.46 -0.29 -13.02 16 10 C 0.18 3.91 4.66 -2.94 -0.01 3.90 16 11 C -0.14 -2.54 5.71 -27.30 -0.16 -2.69 16 12 C -0.11 -1.81 5.51 -28.02 -0.15 -1.97 16 13 C -0.10 -1.59 5.16 -29.79 -0.15 -1.74 16 14 C -0.14 -2.34 5.06 -28.58 -0.14 -2.48 16 15 C 0.17 3.32 2.19 -67.97 -0.15 3.17 16 16 H 0.04 0.82 8.06 -51.93 -0.42 0.40 16 17 C 0.13 2.63 4.52 -4.04 -0.02 2.61 16 18 N -0.68 -14.18 4.71 -61.76 -0.29 -14.47 16 19 C 0.59 12.59 7.77 -13.06 -0.10 12.49 16 20 O -0.58 -13.49 15.66 5.11 0.08 -13.41 16 21 C -0.22 -4.27 6.20 -104.46 -0.65 -4.92 16 22 C -0.09 -1.55 10.27 -39.56 -0.41 -1.96 16 23 C -0.07 -1.03 11.53 -16.58 -0.19 -1.22 16 24 N -0.34 -5.03 2.92 -60.80 -0.18 -5.21 16 25 C 0.05 0.50 10.89 -16.53 -0.18 0.32 16 26 C -0.15 -1.49 9.98 -39.95 -0.40 -1.88 16 27 C -0.13 -1.56 10.09 -39.49 -0.40 -1.96 16 28 C -0.07 -1.09 9.72 -39.50 -0.38 -1.47 16 29 C 0.10 1.72 6.70 -83.91 -0.56 1.16 16 30 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.07 1.77 6.47 -51.93 -0.34 1.44 16 32 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 35 H 0.07 1.45 7.48 -51.93 -0.39 1.06 16 36 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 39 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 1.47 6.84 -51.93 -0.36 1.12 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.41 8.67 7.05 -40.82 -0.29 8.38 16 44 H 0.16 2.70 7.53 -52.49 -0.40 2.31 16 45 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 46 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 49 H 0.15 2.49 7.07 -52.49 -0.37 2.12 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -29.56 384.80 -10.99 -40.55 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.44 Total: 10.66 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -4.26 Total: -4.59 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.14 Total: -55.70 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.08 Total: -13.41 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.56 -10.99 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968944003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.606 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds