Wall clock time and date at job start Wed Apr 1 2020 01:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48503 * 109.47111 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46942 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47155 * 60.00030 * 3 2 1 7 7 C 1.38817 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00072 * 164.49490 * 7 2 1 9 9 N 1.36934 * 119.99943 * 344.48854 * 7 2 1 10 10 C 1.47605 * 118.64197 * 331.70446 * 9 7 2 11 11 C 1.53949 * 112.14031 * 222.11226 * 10 9 7 12 12 C 1.50876 * 110.09539 * 40.55890 * 11 10 9 13 13 C 1.52561 * 109.35171 * 268.11064 * 12 11 10 14 14 C 1.47096 * 114.32957 * 85.03020 * 13 12 11 15 15 C 1.44584 * 118.63860 * 151.68078 * 9 7 2 16 16 H 1.09002 * 109.44721 * 209.34874 * 15 9 7 17 17 C 1.52999 * 109.44894 * 329.26248 * 15 9 7 18 18 N 1.46496 * 109.47512 * 305.00431 * 17 15 9 19 19 C 1.34775 * 120.00225 * 179.97438 * 18 17 15 20 20 O 1.21783 * 120.00039 * 359.97438 * 19 18 17 21 21 C 1.46205 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.41738 * 126.79867 * 359.67890 * 21 19 18 23 23 C 1.34520 * 107.77614 * 179.83362 * 22 21 19 24 24 N 1.36957 * 109.60239 * 0.44577 * 23 22 21 25 25 C 1.36709 * 131.35363 * 179.69104 * 24 23 22 26 26 C 1.35004 * 120.75547 * 179.97438 * 25 24 23 27 27 C 1.40308 * 120.37892 * 0.03821 * 26 25 24 28 28 C 1.36338 * 119.46001 * 359.97438 * 27 26 25 29 29 C 1.36939 * 108.74081 * 359.71827 * 24 23 22 30 30 H 0.96998 * 119.99575 * 359.97438 * 1 2 3 31 31 H 1.08993 * 108.94714 * 342.79467 * 10 9 7 32 32 H 1.08998 * 108.95055 * 101.52021 * 10 9 7 33 33 H 1.09002 * 109.36826 * 160.75328 * 11 10 9 34 34 H 1.08998 * 109.36789 * 280.49444 * 11 10 9 35 35 H 1.08997 * 109.49036 * 28.07736 * 12 11 10 36 36 H 1.09008 * 109.49067 * 148.12227 * 12 11 10 37 37 H 1.08996 * 108.51103 * 206.28211 * 13 12 11 38 38 H 1.08991 * 108.51186 * 323.92897 * 13 12 11 39 39 H 1.08994 * 109.33048 * 176.93281 * 14 13 12 40 40 H 1.09002 * 109.32931 * 57.45136 * 14 13 12 41 41 H 1.09000 * 109.46463 * 65.00369 * 17 15 9 42 42 H 1.08997 * 109.47271 * 185.00011 * 17 15 9 43 43 H 0.97007 * 120.00065 * 359.97438 * 18 17 15 44 44 H 1.08002 * 126.11254 * 359.97438 * 22 21 19 45 45 H 1.08001 * 125.19886 * 180.16792 * 23 22 21 46 46 H 1.07995 * 119.62131 * 0.02562 * 25 24 23 47 47 H 1.07997 * 119.80797 * 180.02562 * 26 25 24 48 48 H 1.08003 * 120.27058 * 180.02562 * 27 26 25 49 49 H 1.07996 * 120.34271 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2506 9 7 1.3629 -2.3666 0.3161 10 6 0.2008 -2.3057 1.2242 11 6 0.2095 -3.4491 2.2550 12 6 1.6118 -3.6795 2.7618 13 6 2.2912 -4.7421 1.9035 14 6 2.9176 -4.2221 0.6783 15 6 1.8456 -3.6048 -0.2534 16 1 1.0150 -4.3021 -0.3629 17 6 2.4620 -3.3280 -1.6261 18 7 1.4836 -2.6385 -2.4708 19 6 1.8081 -2.2912 -3.7319 20 8 2.9148 -2.5501 -4.1692 21 6 0.8318 -1.6026 -4.5747 22 6 -0.4904 -1.2374 -4.2176 23 6 -1.0466 -0.6217 -5.2765 24 7 -0.1471 -0.5800 -6.3084 25 6 -0.2462 -0.0699 -7.5729 26 6 0.7930 -0.1458 -8.4314 27 6 1.9955 -0.7524 -8.0380 28 6 2.1075 -1.2654 -6.7797 29 6 1.0165 -1.1770 -5.9023 30 1 -0.4849 0.8401 0.0004 31 1 0.2143 -1.3526 1.7527 32 1 -0.7133 -2.3700 0.6341 33 1 -0.4385 -3.1867 3.0913 34 1 -0.1578 -4.3617 1.7857 35 1 2.1768 -2.7493 2.7040 36 1 1.5733 -4.0179 3.7973 37 1 3.0581 -5.2327 2.5028 38 1 1.5468 -5.4860 1.6200 39 1 3.4225 -5.0358 0.1579 40 1 3.6486 -3.4581 0.9432 41 1 3.3457 -2.7010 -1.5077 42 1 2.7455 -4.2708 -2.0939 43 1 0.6021 -2.4320 -2.1224 44 1 -0.9655 -1.4188 -3.2649 45 1 -2.0506 -0.2253 -5.3094 46 1 -1.1660 0.3998 -7.8885 47 1 0.6981 0.2626 -9.4266 48 1 2.8259 -0.8118 -8.7260 49 1 3.0263 -1.7358 -6.4621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968944003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:04 Heat of formation + Delta-G solvation = 42.204610 kcal Electronic energy + Delta-G solvation = -30690.913070 eV Core-core repulsion = 26811.663949 eV Total energy + Delta-G solvation = -3879.249121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.18962 -40.44628 -39.37101 -37.46613 -35.91090 -35.16300 -33.95177 -33.14721 -32.44557 -30.91549 -29.37364 -28.30194 -27.16424 -25.19884 -24.66228 -24.36929 -22.98937 -22.36303 -21.36318 -20.76846 -20.61573 -18.92947 -18.08822 -17.45546 -17.20148 -16.94781 -16.62101 -16.52141 -16.20131 -16.09921 -15.86597 -15.42079 -15.26599 -15.20495 -14.86605 -14.47197 -14.21627 -13.93704 -13.67563 -13.63141 -13.34117 -13.13741 -12.90618 -12.84518 -12.77005 -12.69435 -12.50652 -12.35563 -12.24305 -12.00021 -11.52929 -11.38506 -11.33397 -11.30047 -11.18173 -11.03079 -10.71831 -10.33664 -9.75177 -9.59970 -8.51378 -8.30057 -7.77605 -5.19341 -0.19619 0.28330 1.37219 1.40836 1.43648 1.48870 1.70707 2.39400 2.52966 2.67548 2.85294 3.37621 3.61473 3.63490 3.87583 3.96466 4.04240 4.06123 4.11785 4.18411 4.28898 4.29569 4.43035 4.50181 4.55003 4.63723 4.69282 4.80987 4.84283 4.90944 4.97285 5.02870 5.09933 5.15108 5.24268 5.28198 5.29398 5.35859 5.39272 5.40029 5.44850 5.57759 5.67794 5.69485 5.75736 5.79991 5.86261 5.89608 5.92685 6.34124 6.50308 6.92107 7.30132 7.54575 8.03396 8.41578 9.26226 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.003668 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.173447 B = 7632.161570 C = 8407.006532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.022 4.022 3 Si 0.925 3.075 4 H -0.284 1.284 5 H -0.304 1.304 6 H -0.289 1.289 7 C -0.230 4.230 8 H 0.043 0.957 9 N -0.587 5.587 10 C 0.190 3.810 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.175 3.825 16 H 0.055 0.945 17 C 0.136 3.864 18 N -0.687 5.687 19 C 0.579 3.421 20 O -0.611 6.611 21 C -0.282 4.282 22 C -0.110 4.110 23 C -0.062 4.062 24 N -0.341 5.341 25 C 0.046 3.954 26 C -0.145 4.145 27 C -0.095 4.095 28 C -0.126 4.126 29 C 0.094 3.906 30 H 0.245 0.755 31 H 0.038 0.962 32 H 0.003 0.997 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.406 0.594 44 H 0.147 0.853 45 H 0.210 0.790 46 H 0.206 0.794 47 H 0.194 0.806 48 H 0.166 0.834 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 -4.255 -12.014 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.219 4.219 3 Si 0.757 3.243 4 H -0.210 1.210 5 H -0.232 1.232 6 H -0.215 1.215 7 C -0.361 4.361 8 H 0.061 0.939 9 N -0.309 5.309 10 C 0.066 3.934 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.137 4.137 14 C -0.169 4.169 15 C 0.067 3.933 16 H 0.073 0.927 17 C 0.011 3.989 18 N -0.334 5.334 19 C 0.370 3.630 20 O -0.497 6.497 21 C -0.291 4.291 22 C -0.131 4.131 23 C -0.186 4.186 24 N -0.005 5.005 25 C -0.074 4.074 26 C -0.164 4.164 27 C -0.116 4.116 28 C -0.145 4.145 29 C -0.017 4.017 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.021 0.979 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.242 0.758 44 H 0.165 0.835 45 H 0.227 0.773 46 H 0.223 0.777 47 H 0.211 0.789 48 H 0.184 0.816 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.706 -4.220 -12.399 13.612 hybrid contribution 0.313 1.432 0.668 1.611 sum -3.393 -2.788 -11.731 12.526 Atomic orbital electron populations 1.70100 1.05141 1.24737 1.55911 1.25189 0.95641 0.99132 1.01897 0.85854 0.78726 0.83356 0.76348 1.20995 1.23199 1.21540 1.18920 0.91430 0.85790 1.39965 0.93925 1.43759 1.34185 1.01779 1.51193 1.20772 0.87434 0.95661 0.89559 1.21942 0.97213 0.99216 0.98731 1.20907 0.95976 0.98872 0.98342 1.20267 0.99878 0.97698 0.95856 1.21283 0.98515 0.99704 0.97358 1.20657 0.94869 0.88363 0.89406 0.92691 1.21414 0.91635 0.94928 0.90937 1.45446 1.18053 1.58330 1.11566 1.17381 0.86060 0.77800 0.81800 1.90635 1.24273 1.59600 1.75240 1.19489 0.97590 1.16968 0.95053 1.21190 0.93232 0.99487 0.99204 1.22101 0.97805 1.12223 0.86481 1.41770 1.11090 1.36650 1.10986 1.22618 1.03673 0.99617 0.81492 1.21329 0.91545 1.01583 1.01933 1.21572 0.99619 0.95660 0.94775 1.20834 0.97214 1.02355 0.94094 1.18806 0.88472 1.00261 0.94128 0.94510 0.94346 0.97912 0.91942 0.92236 0.93974 0.91707 0.91872 0.92015 0.91000 0.94029 0.94494 0.92052 0.75784 0.83542 0.77288 0.77678 0.78930 0.81627 0.85179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.96 11.14 21.65 0.24 -49.72 16 2 C -0.02 -1.19 4.86 84.86 0.41 -0.78 16 3 Si 0.93 46.41 29.58 68.60 2.03 48.44 16 4 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 5 H -0.30 -15.73 7.11 99.48 0.71 -15.03 16 6 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 7 C -0.23 -12.04 7.62 84.04 0.64 -11.40 16 8 H 0.04 2.40 6.74 -2.91 -0.02 2.38 16 9 N -0.59 -26.58 1.77 -674.24 -1.20 -27.77 16 10 C 0.19 8.43 4.66 86.49 0.40 8.83 16 11 C -0.13 -4.53 5.71 30.22 0.17 -4.36 16 12 C -0.10 -3.35 5.51 29.76 0.16 -3.18 16 13 C -0.10 -2.91 5.16 28.61 0.15 -2.76 16 14 C -0.13 -4.29 5.06 29.40 0.15 -4.14 16 15 C 0.17 6.79 2.19 45.99 0.10 6.90 16 16 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 17 C 0.14 5.71 4.52 86.38 0.39 6.10 16 18 N -0.69 -30.60 4.71 -467.50 -2.20 -32.80 16 19 C 0.58 26.95 7.77 86.31 0.67 27.63 16 20 O -0.61 -30.94 15.66 -4.61 -0.07 -31.01 16 21 C -0.28 -11.69 6.20 -19.76 -0.12 -11.81 16 22 C -0.11 -3.98 10.27 22.28 0.23 -3.75 16 23 C -0.06 -1.76 11.53 83.04 0.96 -0.80 16 24 N -0.34 -9.50 2.92 -346.29 -1.01 -10.51 16 25 C 0.05 0.82 10.89 83.19 0.91 1.72 16 26 C -0.14 -2.16 9.98 22.03 0.22 -1.94 16 27 C -0.10 -1.96 10.09 22.33 0.23 -1.73 16 28 C -0.13 -3.97 9.72 22.33 0.22 -3.76 16 29 C 0.09 3.37 6.70 39.43 0.26 3.63 16 30 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 31 H 0.04 1.95 6.47 -2.39 -0.02 1.93 16 32 H 0.00 0.13 8.02 -2.39 -0.02 0.11 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.87 7.31 -2.39 -0.02 1.85 16 35 H 0.04 1.64 7.48 -2.39 -0.02 1.62 16 36 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.66 7.35 -2.39 -0.02 1.64 16 39 H 0.07 2.09 8.11 -2.39 -0.02 2.07 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.76 6.84 -2.39 -0.02 1.74 16 42 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.41 18.52 7.05 -92.70 -0.65 17.87 16 44 H 0.15 5.44 7.53 -2.91 -0.02 5.42 16 45 H 0.21 3.98 8.06 -2.91 -0.02 3.96 16 46 H 0.21 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 48 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 49 H 0.13 4.61 7.07 -2.91 -0.02 4.59 16 Total: -1.00 -71.47 384.80 4.24 -67.24 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.30 Total: 31.72 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.15 Total: 4.41 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -4.17 Total: -120.80 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.07 Total: -31.01 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -71.47 4.24 -67.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968944003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.441 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds