Wall clock time and date at job start Wed Apr 1 2020 00:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48504 * 109.46961 * 269.99930 * 3 2 1 5 5 H 1.48493 * 109.47324 * 29.99886 * 3 2 1 6 6 H 1.48503 * 109.47003 * 150.00094 * 3 2 1 7 7 C 1.38806 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 35.00014 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00375 * 10 9 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99609 * 85.00044 * 17 15 14 19 19 O 1.21282 * 120.00113 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99867 * 180.02562 * 18 17 15 21 21 C 1.50700 * 109.47015 * 180.02562 * 20 18 17 22 22 C 1.34233 * 126.50016 * 264.68662 * 21 20 18 23 23 N 1.36828 * 109.93033 * 179.87055 * 22 21 20 24 24 H 0.97004 * 125.06919 * 180.16579 * 23 22 21 25 25 C 1.37687 * 109.87306 * 0.40907 * 23 22 21 26 26 C 1.39125 * 133.51200 * 179.72092 * 25 23 22 27 27 C 1.37759 * 119.77836 * 180.02562 * 26 25 23 28 28 C 1.38831 * 120.66679 * 359.97438 * 27 26 25 29 29 C 1.36623 * 120.52875 * 359.97438 * 28 27 26 30 30 C 1.39631 * 119.76088 * 0.02878 * 29 28 27 31 31 C 1.52997 * 109.47007 * 155.00515 * 10 9 7 32 32 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 33 33 H 0.96995 * 119.99690 * 0.02562 * 9 7 2 34 34 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 35 35 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 36 36 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 38 38 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 40 40 H 0.97001 * 120.00071 * 265.00501 * 17 15 14 41 41 H 1.08999 * 109.47030 * 300.00073 * 20 18 17 42 42 H 1.08993 * 109.46971 * 59.99841 * 20 18 17 43 43 H 1.07999 * 125.03751 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.11227 * 0.02562 * 26 25 23 45 45 H 1.07994 * 119.66404 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.73472 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.12098 * 180.02562 * 29 28 27 48 48 H 1.09002 * 109.47153 * 299.99911 * 31 10 9 49 49 H 1.08996 * 109.46952 * 60.00083 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 2.4222 -4.0355 -1.4376 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4558 -0.8278 15 6 1.9470 -6.0771 0.6092 16 1 2.8577 -5.9704 1.1986 17 7 1.1070 -7.1259 1.1929 18 6 1.6766 -8.2081 1.7594 19 8 2.8845 -8.3134 1.7864 20 6 0.8125 -9.2873 2.3593 21 6 1.6882 -10.3766 2.9229 22 6 2.0482 -11.5120 2.3040 23 7 2.8502 -12.2568 3.1252 24 1 3.2365 -13.1167 2.8967 25 6 3.0229 -11.6062 4.3263 26 6 3.7222 -11.9122 5.4895 27 6 3.7019 -11.0343 6.5509 28 6 2.9903 -9.8448 6.4725 29 6 2.2975 -9.5240 5.3396 30 6 2.3043 -10.3993 4.2517 31 6 1.1810 -4.7521 0.6090 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 1.5115 -4.1417 -2.0270 35 1 3.0471 -3.2551 -1.8718 36 1 3.4474 -5.6298 -2.4612 37 1 4.0984 -5.2536 -0.8481 38 1 2.8562 -7.3996 -0.8280 39 1 1.4003 -6.5625 -1.4172 40 1 0.1409 -7.0415 1.1715 41 1 0.2025 -8.8630 3.1567 42 1 0.1643 -9.7040 1.5885 43 1 1.7505 -11.7950 1.3052 44 1 4.2791 -12.8348 5.5600 45 1 4.2458 -11.2735 7.4528 46 1 2.9844 -9.1677 7.3140 47 1 1.7465 -8.5967 5.2856 48 1 0.9216 -4.4823 1.6327 49 1 0.2704 -4.8583 0.0194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981475474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:33 Heat of formation + Delta-G solvation = 14.670002 kcal Electronic energy + Delta-G solvation = -28718.166890 eV Core-core repulsion = 24837.723779 eV Total energy + Delta-G solvation = -3880.443111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47177 -39.76133 -37.88020 -37.04174 -34.59387 -33.37863 -33.11945 -31.11019 -30.56781 -29.50499 -29.20262 -27.84363 -26.91585 -23.71946 -23.01915 -22.16665 -21.93780 -21.53687 -20.30553 -19.72716 -19.17331 -18.02627 -17.24601 -16.71827 -16.58423 -16.06807 -15.63323 -15.11017 -14.76729 -14.50285 -14.35450 -14.18504 -13.96190 -13.79495 -13.57845 -13.51890 -13.18913 -13.00985 -12.84164 -12.59194 -12.23861 -12.08013 -11.96403 -11.82789 -11.55277 -10.98676 -10.97471 -10.88917 -10.85022 -10.69096 -10.31199 -10.23181 -10.14555 -10.01726 -9.81893 -9.64283 -9.44231 -8.89775 -8.81375 -8.36374 -7.82277 -6.94227 -5.75331 -3.03719 0.97701 1.49368 2.41672 2.77334 2.91773 3.38357 3.44995 3.50483 3.51813 3.80666 4.51937 4.58415 4.59905 4.71748 4.89936 4.93937 5.01940 5.05557 5.10755 5.19453 5.32265 5.36523 5.38103 5.50689 5.53623 5.64037 5.66285 5.72141 5.73127 5.80785 5.91845 5.95544 6.01321 6.07424 6.17893 6.31441 6.34818 6.40065 6.46468 6.52262 6.55564 6.58941 6.60763 6.70450 6.76930 6.99866 7.00012 7.15360 7.31731 7.64621 7.72700 8.38001 8.43619 9.54721 10.12280 10.47104 11.47441 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002063 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.738634 B =13566.952398 C =14426.764529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.122 4.122 15 C 0.149 3.851 16 H 0.085 0.915 17 N -0.728 5.728 18 C 0.510 3.490 19 O -0.531 6.531 20 C -0.067 4.067 21 C -0.150 4.150 22 C 0.062 3.938 23 N -0.595 5.595 24 H 0.415 0.585 25 C 0.095 3.905 26 C -0.133 4.133 27 C -0.101 4.101 28 C -0.148 4.148 29 C -0.066 4.066 30 C -0.089 4.089 31 C -0.128 4.128 32 H 0.254 0.746 33 H 0.383 0.617 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.398 0.602 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.168 0.832 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.068 0.932 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -28.170 6.936 29.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.072 3.928 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.161 4.161 15 C 0.045 3.955 16 H 0.104 0.896 17 N -0.379 5.379 18 C 0.296 3.704 19 O -0.407 6.407 20 C -0.107 4.107 21 C -0.157 4.157 22 C -0.065 4.065 23 N -0.198 5.198 24 H 0.251 0.749 25 C -0.012 4.012 26 C -0.154 4.154 27 C -0.120 4.120 28 C -0.167 4.167 29 C -0.085 4.085 30 C -0.094 4.094 31 C -0.167 4.167 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.232 0.768 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.185 0.815 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.086 0.914 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.586 -28.195 6.927 29.148 hybrid contribution -0.143 0.622 -0.317 0.712 sum 2.442 -27.573 6.611 28.459 Atomic orbital electron populations 1.69658 1.05081 1.25588 1.57952 1.24733 0.95521 0.97660 1.03162 0.86206 0.78694 0.83922 0.77494 1.21774 1.21817 1.20756 1.19248 0.91018 0.84081 1.42333 0.91170 1.42406 1.05738 0.99727 1.88607 1.20105 0.94139 0.85561 0.92953 0.93414 1.22284 0.99666 0.95226 1.00488 1.21485 0.98562 0.95450 0.99863 1.21863 0.99954 0.98699 0.95589 1.20991 0.94516 0.86174 0.93825 0.89646 1.46198 1.10355 1.21416 1.59916 1.20651 0.89182 0.82681 0.77914 1.90714 1.14732 1.77920 1.57291 1.19955 0.96729 0.92967 1.01059 1.19533 1.05914 0.96320 0.93959 1.21511 0.96128 0.92811 0.96013 1.41648 1.45043 1.20714 1.12384 0.74886 1.18227 1.01113 0.93900 0.87961 1.19991 1.02519 1.01102 0.91741 1.20784 0.99371 0.94138 0.97744 1.20630 0.99971 0.97733 0.98359 1.20283 0.98426 0.98060 0.91737 1.18988 1.00933 0.94884 0.94574 1.22087 0.99275 0.93444 1.01926 0.93575 0.78348 0.92690 0.91971 0.92627 0.92247 0.92329 0.92168 0.76835 0.88259 0.88334 0.81474 0.86491 0.85923 0.86083 0.86273 0.91370 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.91 5.12 -53.42 -0.27 -18.18 16 10 C 0.18 3.58 2.77 -67.93 -0.19 3.39 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 13 C -0.11 -1.69 5.92 -26.73 -0.16 -1.85 16 14 C -0.12 -1.67 5.49 -26.73 -0.15 -1.82 16 15 C 0.15 2.11 2.46 -67.90 -0.17 1.95 16 16 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 17 N -0.73 -8.36 5.08 -53.78 -0.27 -8.64 16 18 C 0.51 6.38 7.79 -10.98 -0.09 6.30 16 19 O -0.53 -9.01 15.70 5.56 0.09 -8.92 16 20 C -0.07 -0.60 6.23 -29.03 -0.18 -0.78 16 21 C -0.15 -1.61 4.81 -102.71 -0.49 -2.11 16 22 C 0.06 0.54 11.73 -16.73 -0.20 0.35 16 23 N -0.60 -5.03 6.07 -10.65 -0.06 -5.09 16 24 H 0.41 2.13 8.96 -40.82 -0.37 1.76 16 25 C 0.09 1.03 7.28 -83.99 -0.61 0.42 16 26 C -0.13 -1.26 10.08 -39.43 -0.40 -1.66 16 27 C -0.10 -0.94 10.01 -39.54 -0.40 -1.33 16 28 C -0.15 -1.50 9.97 -39.95 -0.40 -1.90 16 29 C -0.07 -0.77 10.05 -39.65 -0.40 -1.17 16 30 C -0.09 -1.08 6.35 -105.14 -0.67 -1.75 16 31 C -0.13 -2.03 4.86 -26.71 -0.13 -2.16 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 47 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -35.05 401.50 -11.52 -46.57 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -7.74 Total: 12.00 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -5.01 Total: -13.87 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: 0.11 Total: -59.27 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.05 -11.52 -46.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.239 kcal (2) G-P(sol) polarization free energy of solvation -35.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds