Wall clock time and date at job start Wed Apr 1 2020 00:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99683 * 2 1 4 4 H 1.48504 * 109.46961 * 269.99930 * 3 2 1 5 5 H 1.48493 * 109.47324 * 29.99886 * 3 2 1 6 6 H 1.48503 * 109.47003 * 150.00094 * 3 2 1 7 7 C 1.38806 * 120.00406 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00403 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99784 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00017 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47297 * 35.00014 * 10 9 7 12 12 C 1.53006 * 109.46998 * 275.00375 * 10 9 7 13 13 C 1.52999 * 109.46626 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99609 * 85.00044 * 17 15 14 19 19 O 1.21282 * 120.00113 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99867 * 180.02562 * 18 17 15 21 21 C 1.50700 * 109.47015 * 180.02562 * 20 18 17 22 22 C 1.34233 * 126.50016 * 264.68662 * 21 20 18 23 23 N 1.36828 * 109.93033 * 179.87055 * 22 21 20 24 24 H 0.97004 * 125.06919 * 180.16579 * 23 22 21 25 25 C 1.37687 * 109.87306 * 0.40907 * 23 22 21 26 26 C 1.39125 * 133.51200 * 179.72092 * 25 23 22 27 27 C 1.37759 * 119.77836 * 180.02562 * 26 25 23 28 28 C 1.38831 * 120.66679 * 359.97438 * 27 26 25 29 29 C 1.36623 * 120.52875 * 359.97438 * 28 27 26 30 30 C 1.39631 * 119.76088 * 0.02878 * 29 28 27 31 31 C 1.52997 * 109.47007 * 155.00515 * 10 9 7 32 32 H 0.96997 * 120.00066 * 0.02562 * 1 2 3 33 33 H 0.96995 * 119.99690 * 0.02562 * 9 7 2 34 34 H 1.08993 * 109.46955 * 300.00226 * 12 10 9 35 35 H 1.09000 * 109.47050 * 60.00054 * 12 10 9 36 36 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 37 37 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 38 38 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 39 39 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 40 40 H 0.97001 * 120.00071 * 265.00501 * 17 15 14 41 41 H 1.08999 * 109.47030 * 300.00073 * 20 18 17 42 42 H 1.08993 * 109.46971 * 59.99841 * 20 18 17 43 43 H 1.07999 * 125.03751 * 359.97438 * 22 21 20 44 44 H 1.07998 * 120.11227 * 0.02562 * 26 25 23 45 45 H 1.07994 * 119.66404 * 180.02562 * 27 26 25 46 46 H 1.08004 * 119.73472 * 179.97438 * 28 27 26 47 47 H 1.07999 * 120.12098 * 180.02562 * 29 28 27 48 48 H 1.09002 * 109.47153 * 299.99911 * 31 10 9 49 49 H 1.08996 * 109.46952 * 60.00083 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5505 0.5889 12 6 2.4222 -4.0355 -1.4376 13 6 3.1877 -5.3602 -1.4375 14 6 2.3110 -6.4558 -0.8278 15 6 1.9470 -6.0771 0.6092 16 1 2.8577 -5.9704 1.1986 17 7 1.1070 -7.1259 1.1929 18 6 1.6766 -8.2081 1.7594 19 8 2.8845 -8.3134 1.7864 20 6 0.8125 -9.2873 2.3593 21 6 1.6882 -10.3766 2.9229 22 6 2.0482 -11.5120 2.3040 23 7 2.8502 -12.2568 3.1252 24 1 3.2365 -13.1167 2.8967 25 6 3.0229 -11.6062 4.3263 26 6 3.7222 -11.9122 5.4895 27 6 3.7019 -11.0343 6.5509 28 6 2.9903 -9.8448 6.4725 29 6 2.2975 -9.5240 5.3396 30 6 2.3043 -10.3993 4.2517 31 6 1.1810 -4.7521 0.6090 32 1 -0.4850 0.8400 -0.0004 33 1 0.3557 -2.3880 -0.0005 34 1 1.5115 -4.1417 -2.0270 35 1 3.0471 -3.2551 -1.8718 36 1 3.4474 -5.6298 -2.4612 37 1 4.0984 -5.2536 -0.8481 38 1 2.8562 -7.3996 -0.8280 39 1 1.4003 -6.5625 -1.4172 40 1 0.1409 -7.0415 1.1715 41 1 0.2025 -8.8630 3.1567 42 1 0.1643 -9.7040 1.5885 43 1 1.7505 -11.7950 1.3052 44 1 4.2791 -12.8348 5.5600 45 1 4.2458 -11.2735 7.4528 46 1 2.9844 -9.1677 7.3140 47 1 1.7465 -8.5967 5.2856 48 1 0.9216 -4.4823 1.6327 49 1 0.2704 -4.8583 0.0194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981475474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:32 Heat of formation + Delta-G solvation = -7.421701 kcal Electronic energy + Delta-G solvation = -28719.124859 eV Core-core repulsion = 24837.723779 eV Total energy + Delta-G solvation = -3881.401079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16705 -40.85388 -39.18868 -37.74628 -36.18512 -34.74039 -33.97430 -32.91875 -31.41984 -30.48747 -30.12213 -29.40509 -27.74549 -25.69572 -23.73453 -23.39738 -22.87234 -22.65108 -21.42631 -20.94543 -20.16756 -19.16235 -18.69911 -17.82019 -17.37243 -17.25487 -16.42971 -16.29673 -16.04229 -15.83702 -15.44050 -15.23053 -15.09306 -15.01451 -14.87534 -14.65304 -14.48494 -14.17582 -13.84555 -13.53549 -13.47220 -13.30787 -12.92289 -12.87820 -12.78709 -12.54156 -12.28046 -12.23598 -12.13484 -12.02519 -11.96221 -11.68601 -11.62051 -11.45496 -11.34846 -10.87185 -10.80777 -10.40590 -9.93586 -9.09421 -8.99232 -8.52415 -7.93588 -5.21266 0.25170 0.73893 1.47260 1.48206 1.56647 1.68451 1.82132 2.30680 2.43981 2.58042 3.03595 3.39512 3.66684 3.83390 3.88995 3.93556 4.02641 4.05856 4.16535 4.24917 4.32319 4.34054 4.41286 4.46087 4.51937 4.56276 4.59751 4.64580 4.70735 4.73298 4.78420 4.84604 4.96272 5.04081 5.05470 5.16905 5.20059 5.23702 5.26474 5.37244 5.50863 5.53043 5.59204 5.59876 5.69330 5.73130 5.80770 5.87218 6.28600 6.29428 6.73572 6.77800 7.35564 7.44693 8.11384 8.35524 9.29702 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.002063 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.738634 B =13566.952398 C =14426.764529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.273 1.273 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.031 0.969 12 C -0.126 4.126 13 C -0.107 4.107 14 C -0.113 4.113 15 C 0.160 3.840 16 H 0.059 0.941 17 N -0.717 5.717 18 C 0.510 3.490 19 O -0.579 6.579 20 C -0.056 4.056 21 C -0.184 4.184 22 C 0.071 3.929 23 N -0.587 5.587 24 H 0.429 0.571 25 C 0.073 3.927 26 C -0.136 4.136 27 C -0.111 4.111 28 C -0.156 4.156 29 C -0.095 4.095 30 C -0.119 4.119 31 C -0.113 4.113 32 H 0.251 0.749 33 H 0.374 0.626 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.414 0.586 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.202 0.798 44 H 0.142 0.858 45 H 0.148 0.852 46 H 0.134 0.866 47 H 0.115 0.885 48 H 0.058 0.942 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -30.371 6.386 31.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.050 0.950 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.152 4.152 15 C 0.054 3.946 16 H 0.077 0.923 17 N -0.369 5.369 18 C 0.298 3.702 19 O -0.458 6.458 20 C -0.096 4.096 21 C -0.191 4.191 22 C -0.056 4.056 23 N -0.191 5.191 24 H 0.269 0.731 25 C -0.034 4.034 26 C -0.156 4.156 27 C -0.130 4.130 28 C -0.175 4.175 29 C -0.113 4.113 30 C -0.124 4.124 31 C -0.152 4.152 32 H 0.059 0.941 33 H 0.206 0.794 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.251 0.749 41 H 0.129 0.871 42 H 0.153 0.847 43 H 0.219 0.781 44 H 0.159 0.841 45 H 0.166 0.834 46 H 0.152 0.848 47 H 0.133 0.867 48 H 0.077 0.923 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.638 -30.450 6.375 31.222 hybrid contribution -0.102 1.226 -0.117 1.235 sum 2.537 -29.224 6.258 29.994 Atomic orbital electron populations 1.69798 1.06385 1.25937 1.59731 1.25493 0.96398 1.00827 1.04035 0.85212 0.77700 0.79910 0.77406 1.21439 1.22127 1.19791 1.19566 0.91247 0.85360 1.40691 0.91162 1.42572 1.05459 1.00771 1.88711 1.20314 0.93789 0.84882 0.94282 0.95041 1.22086 0.99664 0.96330 0.98498 1.21417 0.98035 0.93959 1.01192 1.21778 1.00390 0.98041 0.94949 1.20666 0.93602 0.86093 0.94230 0.92273 1.46032 1.10983 1.20496 1.59373 1.21315 0.88917 0.83034 0.76908 1.90695 1.17026 1.78958 1.59131 1.19975 0.96149 0.91428 1.02097 1.19842 1.07527 0.97785 0.93962 1.22084 0.94646 0.92029 0.96879 1.41701 1.44589 1.21177 1.11593 0.73111 1.18521 1.01621 0.94153 0.89154 1.20356 1.02041 1.01950 0.91272 1.21133 0.99327 0.93732 0.98789 1.20914 0.99718 0.98503 0.98405 1.20453 0.99739 0.98459 0.92698 1.19397 1.01818 0.95674 0.95494 1.21871 0.99121 0.93056 1.01176 0.94058 0.79370 0.92582 0.94174 0.90601 0.92837 0.92166 0.90492 0.74903 0.87098 0.84725 0.78142 0.84066 0.83441 0.84770 0.86651 0.92298 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 3 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 4 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.26 9.93 84.03 0.83 -12.42 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -36.92 5.12 -322.93 -1.65 -38.57 16 10 C 0.18 6.95 2.77 44.99 0.12 7.08 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.13 -4.41 5.50 30.60 0.17 -4.24 16 13 C -0.11 -3.00 5.92 30.59 0.18 -2.82 16 14 C -0.11 -2.86 5.49 30.59 0.17 -2.69 16 15 C 0.16 4.37 2.46 45.01 0.11 4.48 16 16 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 17 N -0.72 -15.29 5.08 -442.44 -2.25 -17.53 16 18 C 0.51 12.13 7.79 87.66 0.68 12.82 16 19 O -0.58 -19.55 15.70 -3.04 -0.05 -19.60 16 20 C -0.06 -0.90 6.23 29.10 0.18 -0.72 16 21 C -0.18 -3.73 4.81 -18.63 -0.09 -3.82 16 22 C 0.07 1.09 11.73 83.00 0.97 2.07 16 23 N -0.59 -8.88 6.07 -187.62 -1.14 -10.02 16 24 H 0.43 3.49 8.96 -92.71 -0.83 2.66 16 25 C 0.07 1.52 7.28 39.03 0.28 1.80 16 26 C -0.14 -2.42 10.08 22.37 0.23 -2.19 16 27 C -0.11 -1.96 10.01 22.30 0.22 -1.73 16 28 C -0.16 -3.20 9.97 22.03 0.22 -2.98 16 29 C -0.09 -2.27 10.05 22.23 0.22 -2.05 16 30 C -0.12 -2.89 6.35 -20.20 -0.13 -3.01 16 31 C -0.11 -3.54 4.86 30.61 0.15 -3.39 16 32 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.37 19.86 7.80 -92.71 -0.72 19.14 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.41 6.24 8.60 -92.71 -0.80 5.44 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 42 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 47 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 48 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 49 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -77.74 401.50 0.85 -76.89 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -1.37 Total: 36.61 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 5.00 Total: -17.70 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -4.76 Total: -124.88 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -77.74 0.85 -76.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981475474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.473 kcal (2) G-P(sol) polarization free energy of solvation -77.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds