Wall clock time and date at job start Wed Apr 1 2020 00:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48494 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46961 * 299.99248 * 3 2 1 6 6 H 1.48500 * 109.47203 * 59.99388 * 3 2 1 7 7 C 1.38806 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99643 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00525 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46866 * 35.00275 * 10 9 7 12 12 C 1.52998 * 109.47368 * 275.00437 * 10 9 7 13 13 C 1.52999 * 109.47380 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46880 * 60.00155 * 13 12 10 15 15 C 1.53006 * 109.46948 * 299.99823 * 14 13 12 16 16 H 1.08996 * 109.46971 * 300.00238 * 15 14 13 17 17 N 1.46504 * 109.47138 * 180.02562 * 15 14 13 18 18 C 1.34773 * 119.99990 * 84.99889 * 17 15 14 19 19 O 1.21287 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.50699 * 120.00064 * 179.97438 * 18 17 15 21 21 N 1.46508 * 109.46960 * 179.97438 * 20 18 17 22 22 C 1.36829 * 125.06358 * 264.97199 * 21 20 18 23 23 C 1.34239 * 109.92845 * 180.02562 * 22 21 20 24 24 C 1.46486 * 106.99611 * 0.26969 * 23 22 21 25 25 C 1.39639 * 134.02878 * 180.50690 * 24 23 22 26 26 C 1.36623 * 119.75918 * 179.56653 * 25 24 23 27 27 C 1.38834 * 120.53351 * 359.69668 * 26 25 24 28 28 C 1.37739 * 120.66423 * 0.02562 * 27 26 25 29 29 C 1.37680 * 125.06144 * 85.02364 * 21 20 18 30 30 C 1.52998 * 109.47352 * 154.99972 * 10 9 7 31 31 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00166 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46995 * 299.99759 * 12 10 9 34 34 H 1.09000 * 109.47090 * 59.99480 * 12 10 9 35 35 H 1.09000 * 109.46773 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.46753 * 299.99850 * 13 12 10 37 37 H 1.08996 * 109.47295 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.47479 * 59.99749 * 14 13 12 39 39 H 0.96997 * 119.99979 * 265.00318 * 17 15 14 40 40 H 1.09007 * 109.47061 * 60.00508 * 20 18 17 41 41 H 1.08995 * 109.47518 * 300.00071 * 20 18 17 42 42 H 1.07998 * 125.03306 * 0.04274 * 22 21 20 43 43 H 1.08002 * 126.49782 * 179.97438 * 23 22 21 44 44 H 1.07991 * 120.11656 * 359.28893 * 25 24 23 45 45 H 1.08005 * 119.73286 * 179.72106 * 26 25 24 46 46 H 1.07999 * 119.66277 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.11078 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.46889 * 60.00316 * 30 10 9 49 49 H 1.09001 * 109.46915 * 300.00207 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 0.5901 12 6 2.4220 -4.0356 -1.4364 13 6 3.1875 -5.3604 -1.4364 14 6 2.3107 -6.4559 -0.8267 15 6 1.9468 -6.0771 0.6104 16 1 2.8574 -5.9705 1.1997 17 7 1.1076 -7.1264 1.1945 18 6 1.6781 -8.2080 1.7611 19 8 2.8862 -8.3125 1.7879 20 6 0.8150 -9.2872 2.3624 21 7 1.6672 -10.3461 2.9090 22 6 2.0195 -11.4913 2.2482 23 6 2.8057 -12.2475 3.0305 24 6 2.9649 -11.5309 4.2981 25 6 3.6589 -11.7935 5.4810 26 6 3.6126 -10.8942 6.5084 27 6 2.8859 -9.7178 6.3839 28 6 2.1987 -9.4361 5.2239 29 6 2.2320 -10.3376 4.1646 30 6 1.1809 -4.7521 0.6102 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 1.5113 -4.1419 -2.0259 34 1 3.0470 -3.2553 -1.8707 35 1 3.4472 -5.6299 -2.4601 36 1 4.0981 -5.2537 -0.8470 37 1 2.8561 -7.3996 -0.8262 38 1 1.4000 -6.5625 -1.4160 39 1 0.1415 -7.0428 1.1733 40 1 0.1662 -9.7047 1.5924 41 1 0.2056 -8.8627 3.1601 42 1 1.7111 -11.7484 1.2457 43 1 3.2350 -13.2052 2.7756 44 1 4.2266 -12.7063 5.5849 45 1 4.1459 -11.0999 7.4248 46 1 2.8586 -9.0169 7.2051 47 1 1.6359 -8.5185 5.1368 48 1 0.2702 -4.8583 0.0206 49 1 0.9216 -4.4822 1.6339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981529562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:11 Heat of formation + Delta-G solvation = 28.829969 kcal Electronic energy + Delta-G solvation = -28880.917340 eV Core-core repulsion = 25001.088251 eV Total energy + Delta-G solvation = -3879.829089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59272 -39.95176 -38.07708 -37.05668 -34.77186 -33.51500 -33.06513 -31.18730 -30.77415 -29.52182 -29.00088 -27.92439 -26.83088 -23.79731 -22.94463 -22.27463 -21.80798 -21.52763 -20.55345 -20.30967 -19.47523 -17.74351 -17.43689 -16.96354 -16.67074 -16.06719 -15.57122 -15.41276 -15.01382 -14.49103 -14.39037 -14.12179 -14.04918 -13.85057 -13.61536 -13.55552 -13.30434 -13.15952 -12.88920 -12.73508 -12.45204 -12.20559 -12.08561 -11.76789 -11.73084 -11.04217 -11.01474 -10.99794 -10.92304 -10.78725 -10.41298 -10.39051 -10.25099 -10.14735 -9.87469 -9.72982 -9.61322 -9.10886 -8.91452 -8.30336 -7.81816 -7.00429 -5.80829 -3.09552 1.00475 1.49784 2.31241 2.36141 2.60471 3.10586 3.40808 3.47154 3.48866 3.81836 4.33501 4.39568 4.52109 4.54409 4.60981 4.64617 4.87960 4.91318 4.99073 5.02215 5.25102 5.28704 5.32813 5.44919 5.49439 5.53894 5.62295 5.64928 5.67567 5.78373 5.80215 5.90639 5.92526 5.95829 6.07765 6.21260 6.25330 6.33712 6.43500 6.46752 6.48377 6.54812 6.61596 6.62989 6.66903 6.91365 7.02056 7.06979 7.07777 7.33668 7.67993 8.01182 8.37867 9.49264 10.05816 10.40614 11.41930 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.002105 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.293822 B =13296.524651 C =14153.043112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.149 3.851 16 H 0.087 0.913 17 N -0.721 5.721 18 C 0.490 3.510 19 O -0.519 6.519 20 C 0.090 3.910 21 N -0.468 5.468 22 C 0.059 3.941 23 C -0.204 4.204 24 C -0.109 4.109 25 C -0.073 4.073 26 C -0.149 4.149 27 C -0.101 4.101 28 C -0.125 4.125 29 C 0.110 3.890 30 C -0.129 4.129 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.400 0.600 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.166 0.834 43 H 0.146 0.854 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.124 0.876 47 H 0.115 0.885 48 H 0.065 0.935 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -25.928 6.354 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.161 4.161 15 C 0.045 3.955 16 H 0.105 0.895 17 N -0.372 5.372 18 C 0.273 3.727 19 O -0.394 6.394 20 C -0.036 4.036 21 N -0.151 5.151 22 C -0.065 4.065 23 C -0.229 4.229 24 C -0.113 4.113 25 C -0.092 4.092 26 C -0.168 4.168 27 C -0.120 4.120 28 C -0.145 4.145 29 C 0.004 3.996 30 C -0.167 4.167 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.234 0.766 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.183 0.817 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.134 0.866 48 H 0.083 0.917 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.122 -25.617 6.240 26.390 hybrid contribution -0.435 1.156 -0.266 1.263 sum 0.686 -24.461 5.974 25.189 Atomic orbital electron populations 1.69667 1.05101 1.25547 1.57906 1.24741 0.95532 0.97709 1.03053 0.86131 0.78852 0.84135 0.77184 1.20521 1.21877 1.21870 1.19285 0.91057 0.84028 1.42402 0.91091 1.42403 1.05733 0.99709 1.88613 1.20095 0.94105 0.85534 0.92986 0.93371 1.22294 0.99718 0.95238 1.00469 1.21484 0.98528 0.95363 0.99984 1.21865 1.00089 0.98834 0.95331 1.21071 0.94451 0.85967 0.93987 0.89477 1.46142 1.10593 1.21108 1.59361 1.20903 0.89522 0.83320 0.78960 1.90789 1.14196 1.77522 1.56862 1.21609 0.92466 0.88310 1.01225 1.43346 1.43331 1.16679 1.11789 1.21750 1.00192 0.86456 0.98091 1.21631 1.06020 1.01790 0.93410 1.19197 1.01429 0.95235 0.95457 1.20243 0.98019 0.99235 0.91665 1.20611 1.01913 0.95115 0.99162 1.20792 0.97160 0.97292 0.96748 1.20024 1.03560 0.98587 0.92350 1.18181 0.98163 0.97001 0.86221 1.22097 0.99337 0.93276 1.02033 0.93581 0.78347 0.92641 0.91836 0.92458 0.92184 0.92322 0.92038 0.76619 0.86242 0.86722 0.81658 0.83617 0.86224 0.86188 0.85849 0.86650 0.91650 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.72 -17.52 5.12 -53.43 -0.27 -17.79 16 10 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 11 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 12 C -0.14 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.62 5.92 -26.73 -0.16 -1.78 16 14 C -0.12 -1.58 5.49 -26.73 -0.15 -1.73 16 15 C 0.15 1.97 2.46 -67.90 -0.17 1.81 16 16 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 17 N -0.72 -7.36 5.08 -53.78 -0.27 -7.64 16 18 C 0.49 5.58 7.86 -10.99 -0.09 5.49 16 19 O -0.52 -8.46 16.08 5.55 0.09 -8.37 16 20 C 0.09 0.70 6.48 -5.19 -0.03 0.67 16 21 N -0.47 -4.95 2.27 -115.71 -0.26 -5.22 16 22 C 0.06 0.57 11.27 -16.73 -0.19 0.38 16 23 C -0.20 -2.10 11.08 -37.67 -0.42 -2.51 16 24 C -0.11 -1.31 6.37 -105.14 -0.67 -1.98 16 25 C -0.07 -0.77 10.05 -39.64 -0.40 -1.17 16 26 C -0.15 -1.47 9.97 -39.94 -0.40 -1.87 16 27 C -0.10 -1.04 10.01 -39.54 -0.40 -1.44 16 28 C -0.12 -1.44 10.00 -39.43 -0.39 -1.83 16 29 C 0.11 1.35 6.80 -83.99 -0.57 0.78 16 30 C -0.13 -1.93 4.86 -26.71 -0.13 -2.06 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.38 9.79 7.80 -40.82 -0.32 9.47 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 2.89 8.60 -40.82 -0.35 2.54 16 40 H 0.12 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 46 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 47 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -34.70 402.76 -11.48 -46.18 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.79 Total: 10.12 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -4.74 Total: -13.56 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.08 Total: -57.64 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.70 -11.48 -46.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981529562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.013 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds