Wall clock time and date at job start Wed Apr 1 2020 00:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99971 * 2 1 4 4 H 1.48494 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46961 * 299.99248 * 3 2 1 6 6 H 1.48500 * 109.47203 * 59.99388 * 3 2 1 7 7 C 1.38806 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99643 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00525 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.46866 * 35.00275 * 10 9 7 12 12 C 1.52998 * 109.47368 * 275.00437 * 10 9 7 13 13 C 1.52999 * 109.47380 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46880 * 60.00155 * 13 12 10 15 15 C 1.53006 * 109.46948 * 299.99823 * 14 13 12 16 16 H 1.08996 * 109.46971 * 300.00238 * 15 14 13 17 17 N 1.46504 * 109.47138 * 180.02562 * 15 14 13 18 18 C 1.34773 * 119.99990 * 84.99889 * 17 15 14 19 19 O 1.21287 * 120.00090 * 0.02562 * 18 17 15 20 20 C 1.50699 * 120.00064 * 179.97438 * 18 17 15 21 21 N 1.46508 * 109.46960 * 179.97438 * 20 18 17 22 22 C 1.36829 * 125.06358 * 264.97199 * 21 20 18 23 23 C 1.34239 * 109.92845 * 180.02562 * 22 21 20 24 24 C 1.46486 * 106.99611 * 0.26969 * 23 22 21 25 25 C 1.39639 * 134.02878 * 180.50690 * 24 23 22 26 26 C 1.36623 * 119.75918 * 179.56653 * 25 24 23 27 27 C 1.38834 * 120.53351 * 359.69668 * 26 25 24 28 28 C 1.37739 * 120.66423 * 0.02562 * 27 26 25 29 29 C 1.37680 * 125.06144 * 85.02364 * 21 20 18 30 30 C 1.52998 * 109.47352 * 154.99972 * 10 9 7 31 31 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00166 * 0.02562 * 9 7 2 33 33 H 1.09004 * 109.46995 * 299.99759 * 12 10 9 34 34 H 1.09000 * 109.47090 * 59.99480 * 12 10 9 35 35 H 1.09000 * 109.46773 * 180.02562 * 13 12 10 36 36 H 1.08994 * 109.46753 * 299.99850 * 13 12 10 37 37 H 1.08996 * 109.47295 * 180.02562 * 14 13 12 38 38 H 1.08996 * 109.47479 * 59.99749 * 14 13 12 39 39 H 0.96997 * 119.99979 * 265.00318 * 17 15 14 40 40 H 1.09007 * 109.47061 * 60.00508 * 20 18 17 41 41 H 1.08995 * 109.47518 * 300.00071 * 20 18 17 42 42 H 1.07998 * 125.03306 * 0.04274 * 22 21 20 43 43 H 1.08002 * 126.49782 * 179.97438 * 23 22 21 44 44 H 1.07991 * 120.11656 * 359.28893 * 25 24 23 45 45 H 1.08005 * 119.73286 * 179.72106 * 26 25 24 46 46 H 1.07999 * 119.66277 * 179.97438 * 27 26 25 47 47 H 1.07999 * 120.11078 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.46889 * 60.00316 * 30 10 9 49 49 H 1.09001 * 109.46915 * 300.00207 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 0.5901 12 6 2.4220 -4.0356 -1.4364 13 6 3.1875 -5.3604 -1.4364 14 6 2.3107 -6.4559 -0.8267 15 6 1.9468 -6.0771 0.6104 16 1 2.8574 -5.9705 1.1997 17 7 1.1076 -7.1264 1.1945 18 6 1.6781 -8.2080 1.7611 19 8 2.8862 -8.3125 1.7879 20 6 0.8150 -9.2872 2.3624 21 7 1.6672 -10.3461 2.9090 22 6 2.0195 -11.4913 2.2482 23 6 2.8057 -12.2475 3.0305 24 6 2.9649 -11.5309 4.2981 25 6 3.6589 -11.7935 5.4810 26 6 3.6126 -10.8942 6.5084 27 6 2.8859 -9.7178 6.3839 28 6 2.1987 -9.4361 5.2239 29 6 2.2320 -10.3376 4.1646 30 6 1.1809 -4.7521 0.6102 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 -0.0002 33 1 1.5113 -4.1419 -2.0259 34 1 3.0470 -3.2553 -1.8707 35 1 3.4472 -5.6299 -2.4601 36 1 4.0981 -5.2537 -0.8470 37 1 2.8561 -7.3996 -0.8262 38 1 1.4000 -6.5625 -1.4160 39 1 0.1415 -7.0428 1.1733 40 1 0.1662 -9.7047 1.5924 41 1 0.2056 -8.8627 3.1601 42 1 1.7111 -11.7484 1.2457 43 1 3.2350 -13.2052 2.7756 44 1 4.2266 -12.7063 5.5849 45 1 4.1459 -11.0999 7.4248 46 1 2.8586 -9.0169 7.2051 47 1 1.6359 -8.5185 5.1368 48 1 0.2702 -4.8583 0.0206 49 1 0.9216 -4.4822 1.6339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981529562.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:10 Heat of formation + Delta-G solvation = 8.361999 kcal Electronic energy + Delta-G solvation = -28881.804897 eV Core-core repulsion = 25001.088251 eV Total energy + Delta-G solvation = -3880.716646 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33265 -40.95494 -39.30866 -37.83023 -36.26249 -34.89137 -33.87987 -32.95350 -31.60132 -30.65745 -29.77684 -29.46123 -27.63519 -25.72578 -23.78886 -23.35092 -22.94909 -22.41625 -21.59406 -21.19680 -20.72691 -19.25356 -18.37288 -18.20200 -17.39568 -17.24400 -16.42077 -16.29391 -16.27010 -15.98846 -15.55555 -15.26290 -15.11205 -15.06325 -14.78964 -14.75834 -14.41502 -14.20372 -13.97515 -13.63244 -13.50109 -13.42958 -13.05746 -12.92760 -12.85228 -12.50579 -12.47837 -12.28260 -12.16053 -12.05049 -11.99785 -11.74509 -11.68288 -11.54040 -11.41723 -11.00533 -10.89619 -10.52649 -10.11111 -9.07974 -9.01532 -8.56283 -7.95986 -5.23551 0.23637 0.70566 1.45782 1.46381 1.50228 1.55946 1.57821 1.90798 2.26815 2.55098 3.02458 3.37434 3.58790 3.65518 3.75812 3.80490 3.85482 3.99837 4.01878 4.13147 4.18447 4.23625 4.28680 4.29900 4.41842 4.50143 4.55101 4.57288 4.59994 4.64340 4.74056 4.79981 4.94756 4.99454 5.07661 5.08838 5.14036 5.18587 5.19261 5.32592 5.43384 5.48266 5.51631 5.57621 5.63119 5.71344 5.86677 5.89540 6.27154 6.31085 6.32835 6.54842 7.18283 7.33657 8.08939 8.32929 9.27414 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.002105 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.293822 B =13296.524651 C =14153.043112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.967 3.033 4 H -0.270 1.270 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.031 0.969 12 C -0.126 4.126 13 C -0.108 4.108 14 C -0.113 4.113 15 C 0.161 3.839 16 H 0.060 0.940 17 N -0.707 5.707 18 C 0.491 3.509 19 O -0.572 6.572 20 C 0.093 3.907 21 N -0.474 5.474 22 C 0.058 3.942 23 C -0.223 4.223 24 C -0.137 4.137 25 C -0.086 4.086 26 C -0.155 4.155 27 C -0.111 4.111 28 C -0.144 4.144 29 C 0.083 3.917 30 C -0.113 4.113 31 H 0.251 0.749 32 H 0.375 0.625 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.418 0.582 40 H 0.163 0.837 41 H 0.136 0.864 42 H 0.199 0.801 43 H 0.163 0.837 44 H 0.137 0.863 45 H 0.143 0.857 46 H 0.141 0.859 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -27.578 5.916 28.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.049 0.951 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.152 4.152 15 C 0.055 3.945 16 H 0.078 0.922 17 N -0.359 5.359 18 C 0.277 3.723 19 O -0.451 6.451 20 C -0.032 4.032 21 N -0.157 5.157 22 C -0.066 4.066 23 C -0.248 4.248 24 C -0.142 4.142 25 C -0.104 4.104 26 C -0.174 4.174 27 C -0.130 4.130 28 C -0.165 4.165 29 C -0.023 4.023 30 C -0.152 4.152 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.256 0.744 40 H 0.180 0.820 41 H 0.154 0.846 42 H 0.216 0.784 43 H 0.181 0.819 44 H 0.155 0.845 45 H 0.161 0.839 46 H 0.159 0.841 47 H 0.138 0.862 48 H 0.098 0.902 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.619 -27.303 5.799 27.919 hybrid contribution -0.230 1.615 -0.108 1.635 sum 0.389 -25.688 5.690 26.313 Atomic orbital electron populations 1.69798 1.06359 1.25887 1.59756 1.25479 0.96389 1.00789 1.04024 0.85162 0.78194 0.80281 0.76695 1.19420 1.22006 1.22065 1.19586 0.91233 0.85344 1.40606 0.91185 1.42564 1.05472 1.00745 1.88694 1.20307 0.93797 0.84904 0.94259 0.95054 1.22094 0.99705 0.96283 0.98557 1.21415 0.98021 0.93973 1.01233 1.21780 1.00517 0.98029 0.94851 1.20708 0.93569 0.85956 0.94270 0.92156 1.45914 1.11290 1.20062 1.58666 1.21543 0.89162 0.83697 0.77914 1.90775 1.16710 1.78678 1.58910 1.21868 0.91649 0.86877 1.02843 1.43572 1.43450 1.17349 1.11323 1.22344 0.99305 0.85816 0.99106 1.21972 1.06866 1.02840 0.93104 1.19669 1.01991 0.95882 0.96643 1.20574 0.98126 1.00150 0.91589 1.20942 1.01742 0.94788 0.99940 1.21123 0.96888 0.97919 0.97047 1.20253 1.04359 0.98960 0.92907 1.18491 0.99019 0.97459 0.87293 1.21870 0.99158 0.92799 1.01379 0.94044 0.79324 0.92473 0.94198 0.90587 0.92889 0.92274 0.90234 0.74438 0.81953 0.84606 0.78402 0.81941 0.84505 0.83915 0.84073 0.86185 0.90152 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.16 13.06 21.65 0.28 -57.88 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.12 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -12.97 9.93 84.03 0.83 -12.14 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 9 N -0.74 -35.94 5.12 -322.94 -1.65 -37.59 16 10 C 0.18 6.69 2.77 44.99 0.12 6.81 16 11 H 0.03 1.29 8.08 -2.38 -0.02 1.27 16 12 C -0.13 -4.27 5.50 30.59 0.17 -4.10 16 13 C -0.11 -2.89 5.92 30.59 0.18 -2.70 16 14 C -0.11 -2.67 5.49 30.59 0.17 -2.50 16 15 C 0.16 4.02 2.46 45.01 0.11 4.13 16 16 H 0.06 1.88 7.58 -2.39 -0.02 1.87 16 17 N -0.71 -12.78 5.08 -442.45 -2.25 -15.03 16 18 C 0.49 10.24 7.86 87.66 0.69 10.93 16 19 O -0.57 -18.32 16.08 -3.05 -0.05 -18.37 16 20 C 0.09 1.17 6.48 85.63 0.56 1.73 16 21 N -0.47 -9.21 2.27 -519.98 -1.18 -10.39 16 22 C 0.06 1.00 11.27 83.00 0.94 1.93 16 23 C -0.22 -4.38 11.08 23.51 0.26 -4.12 16 24 C -0.14 -3.28 6.37 -20.20 -0.13 -3.40 16 25 C -0.09 -1.79 10.05 22.23 0.22 -1.57 16 26 C -0.16 -2.98 9.97 22.03 0.22 -2.76 16 27 C -0.11 -2.26 10.01 22.29 0.22 -2.03 16 28 C -0.14 -3.32 10.00 22.37 0.22 -3.09 16 29 C 0.08 2.01 6.80 39.03 0.27 2.28 16 30 C -0.11 -3.28 4.86 30.61 0.15 -3.13 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.37 19.36 7.80 -92.71 -0.72 18.63 16 33 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.42 4.64 8.60 -92.71 -0.80 3.84 16 40 H 0.16 0.66 8.12 -2.38 -0.02 0.64 16 41 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.20 1.83 8.06 -2.91 -0.02 1.80 16 43 H 0.16 2.38 8.06 -2.91 -0.02 2.35 16 44 H 0.14 2.18 8.06 -2.92 -0.02 2.15 16 45 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 46 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 47 H 0.12 2.46 8.06 -2.91 -0.02 2.43 16 48 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 49 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -77.46 402.76 2.29 -75.17 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.57 Total: 33.49 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 5.67 Total: -17.52 kcal Atomic # 7 Polarization: -116.09 SS G_CDS: -4.80 Total: -120.89 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -77.46 2.29 -75.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981529562.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.535 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds