Wall clock time and date at job start Wed Apr 1 2020 00:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47024 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47068 * 300.00022 * 3 2 1 6 6 H 1.48501 * 109.46760 * 60.00014 * 3 2 1 7 7 C 1.38819 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99584 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99988 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47021 * 324.99868 * 10 9 7 12 12 C 1.53005 * 109.47414 * 84.99756 * 10 9 7 13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47398 * 59.99826 * 15 14 13 17 17 N 1.46500 * 109.47023 * 179.97438 * 15 14 13 18 18 C 1.34779 * 119.99793 * 274.99565 * 17 15 14 19 19 O 1.21279 * 120.00185 * 0.02562 * 18 17 15 20 20 C 1.50702 * 119.99614 * 179.97438 * 18 17 15 21 21 N 1.46500 * 109.46774 * 180.02562 * 20 18 17 22 22 C 1.36838 * 125.06312 * 264.69461 * 21 20 18 23 23 C 1.34236 * 109.93117 * 179.87620 * 22 21 20 24 24 C 1.46492 * 106.99415 * 0.37788 * 23 22 21 25 25 C 1.39632 * 134.02751 * 179.78763 * 24 23 22 26 26 C 1.36633 * 119.76209 * 179.97438 * 25 24 23 27 27 C 1.38825 * 120.52728 * 0.02562 * 26 25 24 28 28 C 1.37750 * 120.66978 * 0.02562 * 27 26 25 29 29 C 1.37680 * 125.06495 * 85.00378 * 21 20 18 30 30 C 1.52997 * 109.47060 * 299.99657 * 15 14 13 31 31 H 0.97001 * 119.99978 * 0.02562 * 1 2 3 32 32 H 0.96994 * 119.99890 * 359.97438 * 9 7 2 33 33 H 1.09001 * 109.46812 * 300.00401 * 12 10 9 34 34 H 1.09002 * 109.46935 * 60.00059 * 12 10 9 35 35 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 36 36 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 37 37 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 38 38 H 1.09004 * 109.46733 * 179.97438 * 14 13 12 39 39 H 0.97004 * 120.00223 * 94.99655 * 17 15 14 40 40 H 1.09002 * 109.47423 * 300.00169 * 20 18 17 41 41 H 1.09002 * 109.46795 * 60.00420 * 20 18 17 42 42 H 1.08001 * 125.03028 * 0.02562 * 22 21 20 43 43 H 1.07993 * 126.50349 * 180.14588 * 23 22 21 44 44 H 1.07999 * 120.11879 * 359.96341 * 25 24 23 45 45 H 1.07996 * 119.73105 * 180.02562 * 26 25 24 46 46 H 1.07994 * 119.66865 * 180.02562 * 27 26 25 47 47 H 1.07999 * 120.11558 * 179.97438 * 28 27 26 48 48 H 1.08996 * 109.47853 * 180.02562 * 30 15 14 49 49 H 1.09002 * 109.47153 * 300.00319 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5900 12 6 2.4220 -4.0357 1.4365 13 6 3.1875 -5.3604 1.4364 14 6 2.3107 -6.4560 0.8266 15 6 1.9469 -6.0772 -0.6104 16 1 2.8576 -5.9705 -1.1998 17 7 1.1079 -7.1265 -1.1945 18 6 1.6785 -8.2081 -1.7612 19 8 2.8865 -8.3128 -1.7872 20 6 0.8154 -9.2878 -2.3616 21 7 1.6676 -10.3465 -2.9085 22 6 2.0649 -10.4398 -4.2146 23 6 2.8397 -11.5232 -4.3810 24 6 2.9399 -12.1823 -3.0765 25 6 3.5883 -13.3302 -2.6165 26 6 3.4842 -13.6871 -1.3017 27 6 2.7383 -12.9178 -0.4191 28 6 2.0898 -11.7821 -0.8519 29 6 2.1833 -11.3991 -2.1862 30 6 1.1814 -4.7525 -0.6104 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0002 33 1 3.0469 -3.2553 1.8708 34 1 1.5113 -4.1419 2.0260 35 1 4.0982 -5.2537 0.8470 36 1 3.4471 -5.6300 2.4601 37 1 1.4001 -6.5626 1.4159 38 1 2.8563 -7.3996 0.8261 39 1 0.1417 -7.0429 -1.1734 40 1 0.1672 -9.7053 -1.5910 41 1 0.2052 -8.8637 -3.1590 42 1 1.7968 -9.7433 -4.9953 43 1 3.2986 -11.8494 -5.3025 44 1 4.1698 -13.9339 -3.2975 45 1 3.9862 -14.5748 -0.9464 46 1 2.6658 -13.2125 0.6173 47 1 1.5116 -11.1905 -0.1576 48 1 0.9217 -4.4827 -1.6340 49 1 0.2707 -4.8591 -0.0210 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981529574.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:20 Heat of formation + Delta-G solvation = 28.751582 kcal Electronic energy + Delta-G solvation = -28880.944017 eV Core-core repulsion = 25001.111529 eV Total energy + Delta-G solvation = -3879.832488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60202 -39.95457 -38.07988 -37.07339 -34.77311 -33.51540 -33.07426 -31.18885 -30.78873 -29.52907 -29.01485 -27.92377 -26.83567 -23.79936 -22.95881 -22.27763 -21.82923 -21.51025 -20.58523 -20.29435 -19.48080 -17.74544 -17.44062 -16.96584 -16.67431 -16.09229 -15.59150 -15.43597 -14.96608 -14.49585 -14.39997 -14.17312 -14.04343 -13.83503 -13.62220 -13.59077 -13.26523 -13.20199 -12.85501 -12.75110 -12.47342 -12.19829 -12.08247 -11.79203 -11.74798 -11.04369 -11.02496 -11.01140 -10.92574 -10.78373 -10.41192 -10.38817 -10.25113 -10.15017 -9.88355 -9.73221 -9.62044 -9.10811 -8.91632 -8.31890 -7.83160 -7.00686 -5.81180 -3.09858 0.98448 1.47695 2.30528 2.36072 2.60053 3.10470 3.40453 3.46801 3.48525 3.79633 4.33248 4.39188 4.50806 4.54112 4.61678 4.63901 4.85222 4.91484 4.96513 5.02087 5.25521 5.27229 5.30581 5.45003 5.48617 5.54042 5.62482 5.62890 5.67493 5.77573 5.80669 5.90187 5.90869 5.96126 6.08334 6.21444 6.25632 6.30961 6.43750 6.45732 6.46990 6.55104 6.60218 6.61902 6.67089 6.91433 7.01333 7.05990 7.07204 7.33545 7.67714 8.01103 8.37518 9.48914 10.05570 10.40332 11.41545 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.024167 B = 0.001982 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.305270 B =14125.685320 C =14631.586042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.150 3.850 16 H 0.087 0.913 17 N -0.721 5.721 18 C 0.490 3.510 19 O -0.519 6.519 20 C 0.090 3.910 21 N -0.468 5.468 22 C 0.060 3.940 23 C -0.204 4.204 24 C -0.108 4.108 25 C -0.073 4.073 26 C -0.149 4.149 27 C -0.102 4.102 28 C -0.125 4.125 29 C 0.109 3.891 30 C -0.128 4.128 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.400 0.600 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.068 0.932 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.257 -26.921 -4.533 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.046 3.954 16 H 0.105 0.895 17 N -0.372 5.372 18 C 0.273 3.727 19 O -0.394 6.394 20 C -0.036 4.036 21 N -0.151 5.151 22 C -0.064 4.064 23 C -0.229 4.229 24 C -0.113 4.113 25 C -0.091 4.091 26 C -0.169 4.169 27 C -0.121 4.121 28 C -0.145 4.145 29 C 0.004 3.996 30 C -0.167 4.167 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.234 0.766 40 H 0.132 0.868 41 H 0.138 0.862 42 H 0.184 0.816 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.132 0.868 48 H 0.087 0.913 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.070 -26.570 -4.488 26.968 hybrid contribution -0.433 1.223 0.135 1.304 sum 0.637 -25.347 -4.353 25.726 Atomic orbital electron populations 1.69668 1.05099 1.25544 1.57892 1.24746 0.95535 0.97712 1.03055 0.86129 0.78851 0.84128 0.77178 1.20518 1.21878 1.21884 1.19291 0.91061 0.84029 1.42414 0.91081 1.42399 1.05732 0.99705 1.88614 1.20093 0.94099 0.85530 0.92995 0.93379 1.22294 0.99723 0.95242 1.00458 1.21483 0.98515 0.95346 1.00000 1.21868 1.00107 0.98863 0.95323 1.21058 0.94429 0.85954 0.94008 0.89485 1.46145 1.10593 1.21123 1.59350 1.20897 0.89516 0.83261 0.79017 1.90787 1.14205 1.77454 1.56912 1.21609 0.92464 0.87947 1.01594 1.43348 1.43796 1.20410 1.07587 1.21785 0.99699 0.99698 0.85194 1.21640 1.06210 0.98136 0.96883 1.19203 1.01398 0.96976 0.93682 1.20251 0.98260 0.94998 0.95596 1.20600 1.01832 1.00913 0.93517 1.20771 0.97400 0.94458 0.99451 1.19997 1.03781 0.98730 0.92029 1.18181 0.98538 0.89428 0.93439 1.22087 0.99349 0.93280 1.02017 0.93583 0.78347 0.91840 0.92638 0.92193 0.92449 0.92039 0.92290 0.76618 0.86805 0.86151 0.81561 0.83576 0.86209 0.86211 0.85935 0.86756 0.91316 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.68 13.06 55.49 0.72 -26.95 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.48 5.12 -53.42 -0.27 -17.75 16 10 C 0.18 3.47 2.77 -67.93 -0.19 3.28 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.14 -2.36 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 14 C -0.12 -1.61 5.49 -26.73 -0.15 -1.76 16 15 C 0.15 1.98 2.45 -67.93 -0.17 1.81 16 16 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 17 N -0.72 -7.36 5.08 -53.81 -0.27 -7.63 16 18 C 0.49 5.57 7.86 -10.98 -0.09 5.49 16 19 O -0.52 -8.45 16.08 5.56 0.09 -8.36 16 20 C 0.09 0.70 6.48 -5.19 -0.03 0.67 16 21 N -0.47 -4.94 2.27 -115.71 -0.26 -5.20 16 22 C 0.06 0.59 11.27 -16.73 -0.19 0.40 16 23 C -0.20 -2.12 11.08 -37.67 -0.42 -2.53 16 24 C -0.11 -1.29 6.37 -105.14 -0.67 -1.96 16 25 C -0.07 -0.75 10.05 -39.64 -0.40 -1.15 16 26 C -0.15 -1.42 9.97 -39.94 -0.40 -1.82 16 27 C -0.10 -0.99 10.01 -39.54 -0.40 -1.39 16 28 C -0.12 -1.37 10.00 -39.43 -0.39 -1.76 16 29 C 0.11 1.32 6.80 -83.99 -0.57 0.75 16 30 C -0.13 -1.92 4.86 -26.73 -0.13 -2.05 16 31 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 2.89 8.60 -40.82 -0.35 2.54 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.12 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 47 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -34.63 402.76 -11.48 -46.11 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -7.79 Total: 9.97 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -4.74 Total: -13.41 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.08 Total: -57.55 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.63 -11.48 -46.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981529574.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.864 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds