Wall clock time and date at job start Wed Apr 1 2020 01:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48499 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47697 * 300.00827 * 3 2 1 6 6 H 1.48510 * 109.47103 * 60.00678 * 3 2 1 7 7 C 1.38817 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99896 * 168.83612 * 7 2 1 9 9 N 1.36938 * 119.99745 * 348.56239 * 7 2 1 10 10 C 1.46892 * 120.68697 * 145.29301 * 9 7 2 11 11 C 1.53143 * 109.09844 * 124.66587 * 10 9 7 12 12 C 1.53186 * 109.35420 * 56.43945 * 11 10 9 13 13 C 1.52628 * 109.34774 * 300.94232 * 12 11 10 14 14 C 1.53468 * 113.67149 * 286.00082 * 13 12 11 15 15 N 1.47670 * 85.96445 * 222.10022 * 14 13 12 16 16 C 1.34780 * 134.45202 * 204.28865 * 15 14 13 17 17 O 1.21279 * 119.99690 * 184.85379 * 16 15 14 18 18 C 1.50695 * 119.99888 * 4.85363 * 16 15 14 19 19 C 1.50699 * 115.55225 * 293.33122 * 18 16 15 20 20 C 1.38231 * 119.61678 * 312.59680 * 19 18 16 21 21 C 1.38636 * 119.15912 * 179.74934 * 20 19 18 22 22 C 1.38670 * 118.41730 * 0.51144 * 21 20 19 23 23 C 1.38174 * 119.16935 * 359.72793 * 22 21 20 24 24 N 1.31849 * 119.62252 * 132.86519 * 19 18 16 25 25 C 1.53000 * 117.49857 * 147.66780 * 18 16 15 26 26 C 1.52998 * 117.50329 * 79.00561 * 18 16 15 27 27 C 1.47680 * 91.09226 * 24.28264 * 15 14 13 28 28 C 1.47113 * 120.68815 * 325.01276 * 9 7 2 29 29 H 0.96993 * 120.00465 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.53580 * 244.54722 * 10 9 7 31 31 H 1.08994 * 109.53774 * 4.70469 * 10 9 7 32 32 H 1.08997 * 109.49210 * 176.40787 * 11 10 9 33 33 H 1.09000 * 109.49208 * 296.47748 * 11 10 9 34 34 H 1.09000 * 109.49177 * 60.90719 * 12 11 10 35 35 H 1.09006 * 109.49269 * 180.98045 * 12 11 10 36 36 H 1.09000 * 113.79536 * 336.36049 * 14 13 12 37 37 H 1.09004 * 113.79506 * 107.83878 * 14 13 12 38 38 H 1.08006 * 120.41957 * 359.97438 * 20 19 18 39 39 H 1.08000 * 120.78602 * 180.21182 * 21 20 19 40 40 H 1.08006 * 120.41271 * 179.70830 * 22 21 20 41 41 H 1.07996 * 119.62491 * 180.02562 * 23 22 21 42 42 H 1.09006 * 117.49732 * 359.97438 * 25 18 16 43 43 H 1.08995 * 117.50522 * 145.01848 * 25 18 16 44 44 H 1.08993 * 117.50173 * 214.98123 * 26 18 16 45 45 H 1.09007 * 117.49484 * 359.97197 * 26 18 16 46 46 H 1.08993 * 113.79007 * 221.44677 * 27 15 14 47 47 H 1.08999 * 113.89230 * 89.98969 * 27 15 14 48 48 H 1.09001 * 109.64116 * 351.08174 * 28 9 7 49 49 H 1.08999 * 109.63871 * 111.69649 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8915 2.3964 1.2127 7 6 2.0103 -1.2022 -0.0005 8 1 3.0749 -1.2109 -0.1816 9 7 1.3460 -2.3764 0.2341 10 6 1.7492 -3.6146 -0.4456 11 6 2.0375 -4.6916 0.6043 12 6 0.8017 -4.8813 1.4894 13 6 0.4571 -3.5578 2.1671 14 6 1.4147 -3.1807 3.3055 15 7 0.2055 -2.7685 4.0461 16 6 -0.0363 -1.9066 5.0537 17 8 -1.1475 -1.8312 5.5336 18 6 1.0741 -1.0367 5.5838 19 6 2.1915 -1.7647 6.2856 20 6 1.8918 -2.7223 7.2363 21 6 2.9271 -3.3899 7.8723 22 6 4.2310 -3.0603 7.5344 23 6 4.4536 -2.0884 6.5778 24 7 3.4437 -1.4771 5.9895 25 6 0.6962 0.3503 6.1076 26 6 1.4407 0.2108 4.7774 27 6 -0.6328 -3.6790 3.2402 28 6 0.2176 -2.4253 1.1768 29 1 -0.4850 0.8399 0.0004 30 1 0.9445 -3.9498 -1.1000 31 1 2.6466 -3.4305 -1.0363 32 1 2.2755 -5.6311 0.1057 33 1 2.8819 -4.3823 1.2202 34 1 -0.0388 -5.2055 0.8759 35 1 1.0104 -5.6351 2.2487 36 1 1.9311 -4.0334 3.7464 37 1 2.0839 -2.3555 3.0620 38 1 0.8641 -2.9501 7.4781 39 1 2.7230 -4.1452 8.6168 40 1 5.0621 -3.5568 8.0132 41 1 5.4661 -1.8262 6.3086 42 1 -0.3557 0.6337 6.0683 43 1 1.2559 0.7364 6.9594 44 1 2.4899 0.5051 4.7546 45 1 0.8789 0.4020 3.8630 46 1 -1.5901 -3.2495 2.9451 47 1 -0.7269 -4.6803 3.6603 48 1 0.1477 -1.4794 1.7139 49 1 -0.7078 -2.6094 0.6312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981768084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:18 Heat of formation + Delta-G solvation = 69.953454 kcal Electronic energy + Delta-G solvation = -31457.383785 eV Core-core repulsion = 27579.337944 eV Total energy + Delta-G solvation = -3878.045841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12315 -41.19855 -39.81832 -37.60878 -37.19345 -34.69076 -33.36938 -32.22744 -31.99759 -31.35729 -27.98778 -27.38723 -27.10173 -25.63118 -24.53245 -23.97666 -23.39212 -23.20239 -21.93025 -20.09849 -19.44895 -18.62065 -18.54108 -17.46595 -17.22162 -17.04590 -16.72172 -16.58900 -16.28887 -15.74587 -15.64182 -15.26031 -15.07231 -14.81831 -14.79925 -14.47692 -14.22868 -14.10379 -13.88003 -13.62551 -13.45093 -13.18940 -12.95595 -12.85547 -12.74504 -12.61185 -12.58537 -12.26041 -11.98782 -11.92032 -11.82489 -11.77287 -11.49751 -11.26575 -11.04938 -10.85245 -10.76661 -10.56032 -10.38198 -9.88582 -9.73961 -8.55686 -7.87103 -5.39390 0.07712 0.34136 1.36839 1.41685 1.45133 1.53613 1.68809 2.48814 2.50958 2.89404 3.07109 3.22332 3.33683 3.42652 3.54603 3.77502 3.82133 3.90415 3.99849 4.05404 4.05765 4.21258 4.24566 4.29870 4.32086 4.38913 4.42818 4.54115 4.55274 4.59020 4.62692 4.70971 4.80853 4.83908 4.86276 4.91557 5.03397 5.04237 5.08655 5.17983 5.19203 5.24660 5.28462 5.33765 5.45895 5.58560 5.68116 5.71292 5.75478 6.43311 6.60740 6.98066 7.03892 7.17605 7.87028 8.42095 9.18534 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.004894 C = 0.004292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.861247 B = 5720.443551 C = 6522.362901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.036 4.036 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.604 5.604 10 C 0.137 3.863 11 C -0.121 4.121 12 C -0.088 4.088 13 C -0.104 4.104 14 C 0.138 3.862 15 N -0.631 5.631 16 C 0.573 3.427 17 O -0.581 6.581 18 C -0.118 4.118 19 C 0.159 3.841 20 C -0.172 4.172 21 C -0.067 4.067 22 C -0.162 4.162 23 C 0.093 3.907 24 N -0.501 5.501 25 C -0.120 4.120 26 C -0.137 4.137 27 C 0.115 3.885 28 C 0.217 3.783 29 H 0.246 0.754 30 H 0.012 0.988 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.123 0.877 39 H 0.166 0.834 40 H 0.174 0.826 41 H 0.180 0.820 42 H 0.100 0.900 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.117 0.883 48 H 0.039 0.961 49 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.696 -11.511 15.025 20.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.233 4.233 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.327 5.327 10 C 0.012 3.988 11 C -0.160 4.160 12 C -0.126 4.126 13 C -0.106 4.106 14 C 0.016 3.984 15 N -0.363 5.363 16 C 0.363 3.637 17 O -0.462 6.462 18 C -0.121 4.121 19 C 0.022 3.978 20 C -0.193 4.193 21 C -0.093 4.093 22 C -0.181 4.181 23 C -0.064 4.064 24 N -0.210 5.210 25 C -0.157 4.157 26 C -0.174 4.174 27 C -0.007 4.007 28 C 0.091 3.909 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.141 0.859 39 H 0.184 0.816 40 H 0.191 0.809 41 H 0.197 0.803 42 H 0.118 0.882 43 H 0.142 0.858 44 H 0.136 0.864 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.135 0.865 48 H 0.057 0.943 49 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 8.170 -10.571 14.763 19.910 hybrid contribution -0.457 0.947 0.084 1.055 sum 7.713 -9.624 14.847 19.301 Atomic orbital electron populations 1.70131 1.06660 1.25449 1.55492 1.25822 0.95805 1.01120 1.00524 0.85477 0.79151 0.80846 0.76754 1.18720 1.21969 1.21859 1.19355 0.90937 0.85009 1.43196 0.92072 1.44146 1.36790 1.05085 1.46679 1.21097 0.97211 0.86737 0.93728 1.21887 0.97520 0.98818 0.97809 1.21307 0.98454 0.93765 0.99092 1.22593 0.94964 0.98777 0.94272 1.23085 0.88668 0.98749 0.87920 1.49971 1.13581 1.39517 1.33219 1.19159 0.87737 0.79333 0.77518 1.90625 1.25567 1.70126 1.59854 1.19851 0.95841 0.89849 1.06602 1.19548 0.90142 0.94309 0.93788 1.21922 1.01331 0.97973 0.98038 1.21927 0.92000 0.97625 0.97712 1.22543 0.98494 0.98527 0.98560 1.23293 0.98299 0.92419 0.92398 1.67306 0.99518 1.27754 1.26412 1.23097 1.01841 0.92787 0.98012 1.22841 1.02553 0.97141 0.94890 1.23393 0.95593 0.94057 0.87633 1.19927 0.88266 0.94186 0.88492 0.94458 0.96961 0.93105 0.89464 0.92622 0.91441 0.89265 0.88306 0.92251 0.85923 0.81608 0.80899 0.80277 0.88175 0.85778 0.86378 0.91055 0.91917 0.86522 0.94250 0.98946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 11.44 21.65 0.25 -55.88 16 2 C -0.04 -2.05 5.01 84.86 0.43 -1.63 16 3 Si 0.95 45.59 29.57 68.60 2.03 47.62 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.25 -13.81 9.53 84.03 0.80 -13.01 16 8 H 0.06 3.27 7.85 -2.91 -0.02 3.25 16 9 N -0.60 -29.37 2.97 -700.44 -2.08 -31.46 16 10 C 0.14 5.38 6.46 86.35 0.56 5.94 16 11 C -0.12 -3.51 6.01 30.70 0.18 -3.32 16 12 C -0.09 -2.39 5.07 30.53 0.15 -2.23 16 13 C -0.10 -3.59 0.87 -52.19 -0.05 -3.63 16 14 C 0.14 4.66 7.34 86.31 0.63 5.29 16 15 N -0.63 -22.98 3.45 -843.33 -2.91 -25.89 16 16 C 0.57 22.44 6.75 87.65 0.59 23.04 16 17 O -0.58 -25.76 17.46 -3.03 -0.05 -25.81 16 18 C -0.12 -4.04 2.01 -53.68 -0.11 -4.15 16 19 C 0.16 4.66 6.14 42.55 0.26 4.93 16 20 C -0.17 -4.23 9.41 22.36 0.21 -4.02 16 21 C -0.07 -1.12 10.18 22.47 0.23 -0.89 16 22 C -0.16 -2.36 10.11 22.36 0.23 -2.14 16 23 C 0.09 1.84 11.18 84.67 0.95 2.79 16 24 N -0.50 -14.05 9.37 -183.89 -1.72 -15.78 16 25 C -0.12 -3.76 9.76 30.62 0.30 -3.46 16 26 C -0.14 -4.97 9.72 30.62 0.30 -4.67 16 27 C 0.12 3.76 7.97 86.29 0.69 4.44 16 28 C 0.22 10.28 4.23 86.04 0.36 10.65 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.65 7.93 -2.39 -0.02 1.64 16 34 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 1.82 8.12 -2.38 -0.02 1.80 16 36 H 0.10 2.76 8.07 -2.39 -0.02 2.74 16 37 H 0.06 2.43 8.08 -2.38 -0.02 2.41 16 38 H 0.12 3.16 7.88 -2.91 -0.02 3.14 16 39 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 41 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 42 H 0.10 3.27 8.02 -2.38 -0.02 3.26 16 43 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 44 H 0.12 4.14 7.60 -2.39 -0.02 4.12 16 45 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 46 H 0.06 2.27 8.09 -2.39 -0.02 2.25 16 47 H 0.12 2.91 8.09 -2.39 -0.02 2.89 16 48 H 0.04 2.19 6.41 -2.39 -0.02 2.17 16 49 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 Total: -1.00 -73.68 398.76 3.15 -70.53 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.93 Total: 22.73 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.72 Total: 13.93 kcal Atomic # 7 Polarization: -122.53 SS G_CDS: -6.47 Total: -129.00 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.68 3.15 -70.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981768084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.483 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds