Wall clock time and date at job start Wed Apr 1 2020 00:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48505 * 109.46905 * 269.99715 * 3 2 1 5 5 H 1.48501 * 109.47302 * 29.99456 * 3 2 1 6 6 H 1.48500 * 109.47727 * 149.99807 * 3 2 1 7 7 C 1.38816 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00050 * 192.76003 * 7 2 1 9 9 N 1.36931 * 120.00003 * 12.76709 * 7 2 1 10 10 C 1.46898 * 120.70307 * 207.85172 * 9 7 2 11 11 C 1.53140 * 109.09960 * 235.41702 * 10 9 7 12 12 C 1.53195 * 109.35405 * 303.46871 * 11 10 9 13 13 C 1.52521 * 109.36265 * 58.90263 * 12 11 10 14 14 C 1.52905 * 114.18871 * 75.75928 * 13 12 11 15 15 N 1.47177 * 87.83594 * 88.16876 * 14 13 12 16 16 C 1.34772 * 135.99135 * 206.62738 * 15 14 13 17 17 O 1.21281 * 120.00344 * 354.91755 * 16 15 14 18 18 C 1.50706 * 119.99847 * 174.91866 * 16 15 14 19 19 C 1.50700 * 115.54604 * 271.76753 * 18 16 15 20 20 C 1.38670 * 120.42407 * 329.20756 * 19 18 16 21 21 C 1.38625 * 118.42349 * 179.78398 * 20 19 18 22 22 C 1.38224 * 119.15823 * 0.51143 * 21 20 19 23 23 N 1.31855 * 120.76637 * 359.72906 * 22 21 20 24 24 C 1.31889 * 121.72505 * 359.97438 * 23 22 21 25 25 C 1.52998 * 117.49795 * 126.06192 * 18 16 15 26 26 C 1.52999 * 117.49723 * 57.43981 * 18 16 15 27 27 C 1.47171 * 88.01039 * 26.62579 * 15 14 13 28 28 C 1.47144 * 120.69666 * 27.84865 * 9 7 2 29 29 H 0.97002 * 119.99286 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.53275 * 115.52261 * 10 9 7 31 31 H 1.09004 * 109.58989 * 355.34338 * 10 9 7 32 32 H 1.09008 * 109.48560 * 183.50792 * 11 10 9 33 33 H 1.09000 * 109.51013 * 63.44817 * 11 10 9 34 34 H 1.09009 * 109.49246 * 298.93665 * 12 11 10 35 35 H 1.09000 * 109.49444 * 178.87151 * 12 11 10 36 36 H 1.08997 * 113.49771 * 333.42387 * 14 13 12 37 37 H 1.09007 * 113.49066 * 202.90592 * 14 13 12 38 38 H 1.08004 * 120.78439 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.41789 * 180.21748 * 21 20 19 40 40 H 1.07997 * 119.61646 * 179.74771 * 22 21 20 41 41 H 1.07998 * 119.62013 * 180.02562 * 24 23 22 42 42 H 1.09002 * 117.49902 * 0.02562 * 25 18 16 43 43 H 1.09003 * 117.49633 * 145.02120 * 25 18 16 44 44 H 1.09005 * 117.49408 * 214.97766 * 26 18 16 45 45 H 1.08997 * 117.49956 * 0.02562 * 26 18 16 46 46 H 1.08998 * 113.49181 * 88.11694 * 27 15 14 47 47 H 1.09001 * 113.49072 * 218.56458 * 27 15 14 48 48 H 1.08997 * 109.63882 * 9.07400 * 28 9 7 49 49 H 1.08998 * 109.63850 * 248.45331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0703 -1.2137 0.2071 9 7 1.3509 -2.3735 -0.2610 10 6 1.8320 -3.6453 0.2949 11 6 2.0541 -4.6398 -0.8483 12 6 0.7533 -4.8004 -1.6414 13 6 0.3249 -3.4434 -2.1902 14 6 1.1379 -2.9700 -3.3956 15 7 0.1834 -3.6918 -4.2524 16 6 0.2176 -4.2680 -5.4702 17 8 1.2112 -4.1715 -6.1591 18 6 -0.9787 -5.0323 -5.9761 19 6 -1.0211 -6.4925 -5.6057 20 6 0.1543 -7.2100 -5.4425 21 6 0.0670 -8.5497 -5.0972 22 6 -1.1801 -9.1244 -4.9387 23 7 -2.2771 -8.4126 -5.1068 24 6 -2.2320 -7.1346 -5.4297 25 6 -1.5486 -4.6316 -7.3382 26 6 -2.3113 -4.2851 -6.0579 27 6 -0.8247 -3.5082 -3.1960 28 6 0.1455 -2.3847 -1.1048 29 1 -0.4849 0.8401 -0.0004 30 1 1.0902 -4.0445 0.9865 31 1 2.7714 -3.4812 0.8230 32 1 2.3515 -5.6049 -0.4380 33 1 2.8384 -4.2675 -1.5074 34 1 -0.0261 -5.1904 -0.9866 35 1 0.9143 -5.4926 -2.4678 36 1 2.1471 -3.3808 -3.4275 37 1 1.1171 -1.8893 -3.5364 38 1 1.1150 -6.7352 -5.5774 39 1 0.9620 -9.1380 -4.9585 40 1 -1.2567 -10.1686 -4.6738 41 1 -3.1519 -6.5838 -5.5586 42 1 -1.0580 -3.8155 -7.8687 43 1 -1.9544 -5.4242 -7.9669 44 1 -3.2189 -4.8499 -5.8443 45 1 -2.3227 -3.2407 -5.7463 46 1 -1.3796 -2.5740 -3.2825 47 1 -1.4740 -4.3731 -3.0601 48 1 0.0121 -1.4062 -1.5661 49 1 -0.7254 -2.6280 -0.4962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981958513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:37 Heat of formation + Delta-G solvation = 92.028551 kcal Electronic energy + Delta-G solvation = -30771.304925 eV Core-core repulsion = 26894.216333 eV Total energy + Delta-G solvation = -3877.088592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.09913 -40.24090 -38.66453 -36.65867 -35.85567 -32.90402 -32.62374 -31.06234 -30.42982 -29.99980 -26.70697 -25.75063 -25.41565 -24.72436 -23.86534 -22.54412 -22.34036 -22.05691 -20.61780 -18.81816 -17.84604 -17.62319 -16.99250 -16.72737 -16.22909 -16.01192 -15.54567 -15.20734 -14.77873 -14.63686 -14.13384 -14.02504 -13.77861 -13.72054 -13.50087 -13.11601 -13.09199 -12.94310 -12.58474 -12.36293 -12.19479 -11.85841 -11.76818 -11.63085 -11.40769 -11.20069 -10.98411 -10.93094 -10.80107 -10.50651 -10.28985 -10.11900 -10.01808 -9.93302 -9.83108 -9.72391 -9.53667 -9.34157 -9.03618 -8.55049 -8.45083 -6.72868 -5.84962 -3.28395 0.83787 1.07473 2.62762 2.89393 3.33846 3.34466 3.41927 3.42377 3.75628 4.06549 4.31468 4.34829 4.43175 4.54105 4.62388 4.70630 4.78467 4.78682 5.00228 5.15044 5.21041 5.30654 5.36157 5.37416 5.42647 5.52921 5.56557 5.60750 5.64136 5.73863 5.80084 5.81554 5.86761 5.94075 5.98187 6.03346 6.06755 6.13138 6.22120 6.34946 6.45282 6.48568 6.58648 6.71093 6.80946 6.94890 7.21136 7.53305 7.73482 7.73524 7.93219 8.25848 8.37875 9.15190 9.77306 10.34112 11.23555 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.003300 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.091398 B = 8481.544110 C = 9250.148917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.145 3.855 11 C -0.134 4.134 12 C -0.079 4.079 13 C -0.112 4.112 14 C 0.127 3.873 15 N -0.634 5.634 16 C 0.577 3.423 17 O -0.544 6.544 18 C -0.111 4.111 19 C -0.085 4.085 20 C -0.062 4.062 21 C -0.166 4.166 22 C 0.092 3.908 23 N -0.480 5.480 24 C 0.101 3.899 25 C -0.134 4.134 26 C -0.159 4.159 27 C 0.109 3.891 28 C 0.192 3.808 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 -13.866 -10.455 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.116 4.116 13 C -0.115 4.115 14 C 0.005 3.995 15 N -0.367 5.367 16 C 0.365 3.635 17 O -0.422 6.422 18 C -0.114 4.114 19 C -0.087 4.087 20 C -0.088 4.088 21 C -0.186 4.186 22 C -0.064 4.064 23 N -0.188 5.188 24 C -0.055 4.055 25 C -0.172 4.172 26 C -0.196 4.196 27 C -0.014 4.014 28 C 0.066 3.934 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -5.492 -14.159 -10.881 18.683 hybrid contribution 1.297 1.299 -0.123 1.840 sum -4.195 -12.860 -11.004 17.438 Atomic orbital electron populations 1.69960 1.05131 1.25481 1.54625 1.25039 0.95396 0.98249 1.00846 0.86280 0.79089 0.83632 0.77719 1.21448 1.21716 1.20458 1.19213 0.91466 0.84077 1.43035 0.91589 1.44016 1.30299 1.02293 1.54668 1.20882 0.97539 0.86963 0.92727 1.22016 0.96937 0.99066 0.99268 1.21010 0.97892 0.94311 0.98427 1.22571 0.94415 0.98865 0.95604 1.23022 0.94371 0.97021 0.85068 1.49775 1.17475 1.54249 1.15250 1.18721 0.87196 0.78684 0.78927 1.90696 1.34072 1.62151 1.55304 1.19905 0.95542 0.91980 1.04009 1.19694 0.94740 0.93024 1.01263 1.21538 0.98777 0.94008 0.94524 1.22149 0.99631 0.95600 1.01178 1.22781 0.87857 1.00031 0.95770 1.67733 1.32345 1.07113 1.11649 1.22619 0.96925 0.90620 0.95376 1.23088 1.01150 1.03463 0.89478 1.23239 0.93593 1.01542 1.01179 1.23111 0.93171 1.01419 0.83700 1.20668 0.88502 0.95700 0.88546 0.93579 0.96370 0.92838 0.93058 0.92388 0.92196 0.93602 0.91061 0.89447 0.84701 0.84580 0.82666 0.82661 0.87610 0.87637 0.87346 0.87492 0.89292 0.91060 0.88651 0.95638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.65 10.96 55.49 0.61 -24.04 16 2 C 0.00 0.07 5.03 -17.43 -0.09 -0.01 16 3 Si 0.90 20.96 29.57 -169.99 -5.03 15.93 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.25 -6.43 9.61 -15.06 -0.14 -6.57 16 8 H 0.07 1.70 7.86 -52.48 -0.41 1.29 16 9 N -0.59 -13.71 3.01 -172.51 -0.52 -14.23 16 10 C 0.15 2.87 6.45 -3.75 -0.02 2.85 16 11 C -0.13 -2.22 6.02 -26.56 -0.16 -2.38 16 12 C -0.08 -1.26 5.08 -26.88 -0.14 -1.40 16 13 C -0.11 -1.90 0.95 -155.03 -0.15 -2.05 16 14 C 0.13 2.22 7.66 -8.18 -0.06 2.16 16 15 N -0.63 -9.93 3.47 -185.14 -0.64 -10.57 16 16 C 0.58 9.12 6.18 -10.98 -0.07 9.05 16 17 O -0.54 -10.49 17.66 5.56 0.10 -10.39 16 18 C -0.11 -1.34 2.18 -156.81 -0.34 -1.69 16 19 C -0.08 -1.01 5.49 -104.48 -0.57 -1.58 16 20 C -0.06 -0.76 9.44 -39.28 -0.37 -1.13 16 21 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 22 C 0.09 0.92 11.18 -17.55 -0.20 0.73 16 23 N -0.48 -5.61 10.36 -13.25 -0.14 -5.75 16 24 C 0.10 1.11 10.53 -17.55 -0.18 0.93 16 25 C -0.13 -1.35 9.91 -26.73 -0.26 -1.61 16 26 C -0.16 -1.49 9.20 -26.73 -0.25 -1.73 16 27 C 0.11 1.58 7.22 -8.19 -0.06 1.52 16 28 C 0.19 4.10 4.46 -3.86 -0.02 4.08 16 29 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.06 1.02 7.48 -51.93 -0.39 0.63 16 34 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.05 0.72 7.96 -51.93 -0.41 0.30 16 36 H 0.07 1.31 7.47 -51.93 -0.39 0.92 16 37 H 0.09 1.63 7.96 -51.93 -0.41 1.21 16 38 H 0.14 1.80 7.30 -52.48 -0.38 1.41 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.16 1.35 5.96 -52.49 -0.31 1.04 16 42 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.11 0.79 6.12 -51.93 -0.32 0.47 16 45 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 47 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 48 H 0.10 2.28 5.86 -51.93 -0.30 1.98 16 49 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -30.46 392.60 -10.71 -41.17 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -7.53 Total: 2.87 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.48 Total: -0.91 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.69 Total: -54.59 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.10 Total: -10.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.46 -10.71 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981958513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.200 kcal (2) G-P(sol) polarization free energy of solvation -30.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds