Wall clock time and date at job start Wed Apr 1 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00256 * 2 1 4 4 H 1.48505 * 109.46905 * 269.99715 * 3 2 1 5 5 H 1.48501 * 109.47302 * 29.99456 * 3 2 1 6 6 H 1.48500 * 109.47727 * 149.99807 * 3 2 1 7 7 C 1.38816 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00050 * 192.76003 * 7 2 1 9 9 N 1.36931 * 120.00003 * 12.76709 * 7 2 1 10 10 C 1.46898 * 120.70307 * 207.85172 * 9 7 2 11 11 C 1.53140 * 109.09960 * 235.41702 * 10 9 7 12 12 C 1.53195 * 109.35405 * 303.46871 * 11 10 9 13 13 C 1.52521 * 109.36265 * 58.90263 * 12 11 10 14 14 C 1.52905 * 114.18871 * 75.75928 * 13 12 11 15 15 N 1.47177 * 87.83594 * 88.16876 * 14 13 12 16 16 C 1.34772 * 135.99135 * 206.62738 * 15 14 13 17 17 O 1.21281 * 120.00344 * 354.91755 * 16 15 14 18 18 C 1.50706 * 119.99847 * 174.91866 * 16 15 14 19 19 C 1.50700 * 115.54604 * 271.76753 * 18 16 15 20 20 C 1.38670 * 120.42407 * 329.20756 * 19 18 16 21 21 C 1.38625 * 118.42349 * 179.78398 * 20 19 18 22 22 C 1.38224 * 119.15823 * 0.51143 * 21 20 19 23 23 N 1.31855 * 120.76637 * 359.72906 * 22 21 20 24 24 C 1.31889 * 121.72505 * 359.97438 * 23 22 21 25 25 C 1.52998 * 117.49795 * 126.06192 * 18 16 15 26 26 C 1.52999 * 117.49723 * 57.43981 * 18 16 15 27 27 C 1.47171 * 88.01039 * 26.62579 * 15 14 13 28 28 C 1.47144 * 120.69666 * 27.84865 * 9 7 2 29 29 H 0.97002 * 119.99286 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.53275 * 115.52261 * 10 9 7 31 31 H 1.09004 * 109.58989 * 355.34338 * 10 9 7 32 32 H 1.09008 * 109.48560 * 183.50792 * 11 10 9 33 33 H 1.09000 * 109.51013 * 63.44817 * 11 10 9 34 34 H 1.09009 * 109.49246 * 298.93665 * 12 11 10 35 35 H 1.09000 * 109.49444 * 178.87151 * 12 11 10 36 36 H 1.08997 * 113.49771 * 333.42387 * 14 13 12 37 37 H 1.09007 * 113.49066 * 202.90592 * 14 13 12 38 38 H 1.08004 * 120.78439 * 0.02562 * 20 19 18 39 39 H 1.07999 * 120.41789 * 180.21748 * 21 20 19 40 40 H 1.07997 * 119.61646 * 179.74771 * 22 21 20 41 41 H 1.07998 * 119.62013 * 180.02562 * 24 23 22 42 42 H 1.09002 * 117.49902 * 0.02562 * 25 18 16 43 43 H 1.09003 * 117.49633 * 145.02120 * 25 18 16 44 44 H 1.09005 * 117.49408 * 214.97766 * 26 18 16 45 45 H 1.08997 * 117.49956 * 0.02562 * 26 18 16 46 46 H 1.08998 * 113.49181 * 88.11694 * 27 15 14 47 47 H 1.09001 * 113.49072 * 218.56458 * 27 15 14 48 48 H 1.08997 * 109.63882 * 9.07400 * 28 9 7 49 49 H 1.08998 * 109.63850 * 248.45331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0703 -1.2137 0.2071 9 7 1.3509 -2.3735 -0.2610 10 6 1.8320 -3.6453 0.2949 11 6 2.0541 -4.6398 -0.8483 12 6 0.7533 -4.8004 -1.6414 13 6 0.3249 -3.4434 -2.1902 14 6 1.1379 -2.9700 -3.3956 15 7 0.1834 -3.6918 -4.2524 16 6 0.2176 -4.2680 -5.4702 17 8 1.2112 -4.1715 -6.1591 18 6 -0.9787 -5.0323 -5.9761 19 6 -1.0211 -6.4925 -5.6057 20 6 0.1543 -7.2100 -5.4425 21 6 0.0670 -8.5497 -5.0972 22 6 -1.1801 -9.1244 -4.9387 23 7 -2.2771 -8.4126 -5.1068 24 6 -2.2320 -7.1346 -5.4297 25 6 -1.5486 -4.6316 -7.3382 26 6 -2.3113 -4.2851 -6.0579 27 6 -0.8247 -3.5082 -3.1960 28 6 0.1455 -2.3847 -1.1048 29 1 -0.4849 0.8401 -0.0004 30 1 1.0902 -4.0445 0.9865 31 1 2.7714 -3.4812 0.8230 32 1 2.3515 -5.6049 -0.4380 33 1 2.8384 -4.2675 -1.5074 34 1 -0.0261 -5.1904 -0.9866 35 1 0.9143 -5.4926 -2.4678 36 1 2.1471 -3.3808 -3.4275 37 1 1.1171 -1.8893 -3.5364 38 1 1.1150 -6.7352 -5.5774 39 1 0.9620 -9.1380 -4.9585 40 1 -1.2567 -10.1686 -4.6738 41 1 -3.1519 -6.5838 -5.5586 42 1 -1.0580 -3.8155 -7.8687 43 1 -1.9544 -5.4242 -7.9669 44 1 -3.2189 -4.8499 -5.8443 45 1 -2.3227 -3.2407 -5.7463 46 1 -1.3796 -2.5740 -3.2825 47 1 -1.4740 -4.3731 -3.0601 48 1 0.0121 -1.4062 -1.5661 49 1 -0.7254 -2.6280 -0.4962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981958513.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:35 Heat of formation + Delta-G solvation = 75.744880 kcal Electronic energy + Delta-G solvation = -30772.011038 eV Core-core repulsion = 26894.216333 eV Total energy + Delta-G solvation = -3877.794705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.23438 -41.28743 -39.83708 -37.73738 -37.41897 -34.65444 -33.43109 -32.01913 -31.82802 -31.63288 -28.07659 -27.23847 -27.07833 -25.67049 -24.67287 -24.00322 -23.31151 -23.11732 -22.10883 -20.03117 -19.27643 -18.67760 -18.47154 -17.93207 -17.30224 -17.13284 -16.83258 -16.44691 -16.14163 -15.74297 -15.53985 -15.28348 -15.10381 -14.83698 -14.77102 -14.53313 -14.26523 -14.09842 -14.00398 -13.66811 -13.41848 -13.20919 -13.01302 -12.85172 -12.72482 -12.62899 -12.46034 -12.26663 -12.09539 -11.97309 -11.83540 -11.72140 -11.48868 -11.33789 -11.11740 -10.89723 -10.71313 -10.51550 -10.38223 -9.83735 -9.78560 -8.62192 -7.84304 -5.29103 0.06426 0.24935 1.40716 1.47042 1.49781 1.56489 1.68884 2.52018 2.52654 2.93950 3.18916 3.27480 3.30408 3.38055 3.59600 3.72181 3.82711 3.84935 3.86496 3.92820 4.02490 4.06699 4.22527 4.29958 4.34148 4.38358 4.44345 4.49307 4.58419 4.59545 4.64195 4.65036 4.74506 4.80765 4.84623 4.89954 4.97363 5.02389 5.08845 5.11812 5.14060 5.24415 5.26737 5.27763 5.41953 5.56266 5.66510 5.69590 5.77435 6.42801 6.67578 6.96303 6.98665 7.19364 7.89220 8.40460 9.21446 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.003300 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.091398 B = 8481.544110 C = 9250.148917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.042 4.042 3 Si 0.958 3.042 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.257 4.257 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.142 3.858 11 C -0.123 4.123 12 C -0.071 4.071 13 C -0.105 4.105 14 C 0.124 3.876 15 N -0.630 5.630 16 C 0.575 3.425 17 O -0.587 6.587 18 C -0.126 4.126 19 C -0.091 4.091 20 C -0.084 4.084 21 C -0.162 4.162 22 C 0.091 3.909 23 N -0.497 5.497 24 C 0.102 3.898 25 C -0.130 4.130 26 C -0.139 4.139 27 C 0.123 3.877 28 C 0.204 3.796 29 H 0.250 0.750 30 H 0.021 0.979 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.158 0.842 40 H 0.185 0.815 41 H 0.179 0.821 42 H 0.094 0.906 43 H 0.126 0.874 44 H 0.138 0.862 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.065 0.935 49 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.509 -15.980 -10.905 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.787 3.213 4 H -0.216 1.216 5 H -0.221 1.221 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.017 3.983 11 C -0.162 4.162 12 C -0.109 4.109 13 C -0.108 4.108 14 C 0.001 3.999 15 N -0.363 5.363 16 C 0.366 3.634 17 O -0.467 6.467 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.110 4.110 21 C -0.182 4.182 22 C -0.065 4.065 23 N -0.205 5.205 24 C -0.054 4.054 25 C -0.168 4.168 26 C -0.175 4.175 27 C 0.000 4.000 28 C 0.078 3.922 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.131 0.869 39 H 0.176 0.824 40 H 0.202 0.798 41 H 0.195 0.805 42 H 0.113 0.887 43 H 0.144 0.856 44 H 0.156 0.844 45 H 0.122 0.878 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.083 0.917 49 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -6.873 -16.300 -11.326 21.005 hybrid contribution 1.799 1.921 0.034 2.632 sum -5.074 -14.379 -11.292 18.974 Atomic orbital electron populations 1.70090 1.06085 1.25623 1.55845 1.25622 0.96093 1.00675 1.01381 0.85412 0.78159 0.80405 0.77340 1.21609 1.22072 1.19841 1.19442 0.91562 0.85423 1.42260 0.92072 1.44271 1.30598 1.02780 1.55532 1.21009 0.97191 0.86248 0.93897 1.21894 0.97036 0.99391 0.97919 1.20962 0.97755 0.93459 0.98695 1.22356 0.95894 0.98218 0.94283 1.22847 0.94359 0.96210 0.86462 1.49752 1.17111 1.53844 1.15545 1.19416 0.87822 0.78027 0.78165 1.90666 1.36103 1.63594 1.56383 1.19788 0.95213 0.92142 1.05866 1.19685 0.95111 0.92611 1.01927 1.21549 0.98179 0.95211 0.96081 1.22381 1.00791 0.94830 1.00172 1.23271 0.87325 1.01217 0.94732 1.67801 1.33086 1.07484 1.12175 1.22897 0.97201 0.90589 0.94750 1.23191 1.00634 1.03608 0.89323 1.23398 0.93070 1.01388 0.99680 1.23059 0.92349 1.02846 0.81735 1.20380 0.87322 0.95540 0.88930 0.94060 0.96138 0.93216 0.90066 0.93631 0.91034 0.92682 0.92346 0.91288 0.86855 0.82421 0.79846 0.80461 0.88734 0.85621 0.84419 0.87766 0.88713 0.88510 0.91667 0.97305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.72 10.96 21.65 0.24 -51.48 16 2 C -0.04 -2.25 5.03 84.86 0.43 -1.82 16 3 Si 0.96 43.84 29.57 68.60 2.03 45.87 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.26 -13.54 9.61 84.04 0.81 -12.73 16 8 H 0.06 3.22 7.86 -2.91 -0.02 3.19 16 9 N -0.61 -28.69 3.01 -699.70 -2.11 -30.79 16 10 C 0.14 5.55 6.45 86.35 0.56 6.11 16 11 C -0.12 -3.94 6.02 30.71 0.18 -3.75 16 12 C -0.07 -2.15 5.08 30.50 0.16 -2.00 16 13 C -0.11 -3.53 0.95 -52.52 -0.05 -3.58 16 14 C 0.12 4.45 7.66 83.33 0.64 5.09 16 15 N -0.63 -19.54 3.47 -858.05 -2.98 -22.51 16 16 C 0.58 18.11 6.18 87.66 0.54 18.65 16 17 O -0.59 -23.22 17.66 -3.03 -0.05 -23.28 16 18 C -0.13 -2.87 2.18 -53.67 -0.12 -2.99 16 19 C -0.09 -1.97 5.49 -19.77 -0.11 -2.08 16 20 C -0.08 -1.94 9.44 22.47 0.21 -1.73 16 21 C -0.16 -2.89 10.11 22.36 0.23 -2.66 16 22 C 0.09 1.54 11.18 84.69 0.95 2.49 16 23 N -0.50 -10.06 10.36 -195.84 -2.03 -12.09 16 24 C 0.10 1.92 10.53 84.67 0.89 2.81 16 25 C -0.13 -2.37 9.91 30.59 0.30 -2.06 16 26 C -0.14 -2.21 9.20 30.59 0.28 -1.93 16 27 C 0.12 3.38 7.22 83.33 0.60 3.98 16 28 C 0.20 8.86 4.46 86.15 0.38 9.25 16 29 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 32 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 34 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.05 1.60 7.96 -2.39 -0.02 1.58 16 36 H 0.06 2.23 7.47 -2.39 -0.02 2.21 16 37 H 0.07 2.71 7.96 -2.38 -0.02 2.69 16 38 H 0.11 3.07 7.30 -2.91 -0.02 3.05 16 39 H 0.16 1.99 8.06 -2.91 -0.02 1.96 16 40 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.18 2.35 5.96 -2.91 -0.02 2.33 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.14 1.39 6.12 -2.38 -0.01 1.37 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.09 2.54 8.09 -2.39 -0.02 2.52 16 47 H 0.10 2.23 8.11 -2.39 -0.02 2.21 16 48 H 0.07 3.23 5.86 -2.39 -0.01 3.22 16 49 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -67.72 392.60 2.93 -64.79 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.95 Total: 18.47 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 6.88 Total: 11.03 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -6.87 Total: -116.88 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.05 Total: -23.28 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -67.72 2.93 -64.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981958513.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.530 kcal (2) G-P(sol) polarization free energy of solvation -67.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds