Wall clock time and date at job start Wed Apr 1 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99841 * 2 1 4 4 H 1.48494 * 109.46937 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46792 * 299.99513 * 3 2 1 6 6 H 1.48493 * 109.47409 * 59.99533 * 3 2 1 7 7 C 1.38812 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99800 * 163.30858 * 7 2 1 9 9 N 1.36939 * 119.99981 * 343.31677 * 7 2 1 10 10 C 1.46893 * 120.69936 * 152.80097 * 9 7 2 11 11 C 1.53144 * 109.10930 * 124.61900 * 10 9 7 12 12 C 1.53200 * 109.35551 * 56.51147 * 11 10 9 13 13 C 1.52513 * 109.36126 * 301.10540 * 12 11 10 14 14 C 1.52914 * 114.18555 * 284.26306 * 13 12 11 15 15 N 1.47161 * 87.84107 * 220.43358 * 14 13 12 16 16 C 1.34779 * 135.99661 * 206.62856 * 15 14 13 17 17 O 1.21287 * 119.99585 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00362 * 179.97438 * 16 15 14 19 19 H 1.09003 * 115.54655 * 34.32390 * 18 16 15 20 20 C 1.53067 * 117.51416 * 248.60820 * 18 16 15 21 21 C 1.52992 * 117.50187 * 179.97438 * 18 16 15 22 22 H 1.09000 * 117.49916 * 0.02562 * 21 18 16 23 23 C 1.50696 * 117.50096 * 215.00038 * 21 18 16 24 24 C 1.38681 * 120.41819 * 120.11163 * 23 21 18 25 25 C 1.38627 * 118.41999 * 179.71144 * 24 23 21 26 26 C 1.38230 * 119.16181 * 0.50506 * 25 24 23 27 27 N 1.31848 * 120.76090 * 359.48374 * 26 25 24 28 28 C 1.31893 * 121.73058 * 0.27031 * 27 26 25 29 29 C 1.47186 * 88.01273 * 26.88011 * 15 14 13 30 30 C 1.47146 * 120.69643 * 332.82138 * 9 7 2 31 31 H 0.96994 * 120.00501 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.53092 * 244.50176 * 10 9 7 33 33 H 1.08997 * 109.53628 * 4.65315 * 10 9 7 34 34 H 1.08997 * 109.49134 * 176.47748 * 11 10 9 35 35 H 1.09000 * 109.48756 * 296.52837 * 11 10 9 36 36 H 1.08997 * 109.49245 * 181.13926 * 12 11 10 37 37 H 1.09002 * 109.49207 * 61.06957 * 12 11 10 38 38 H 1.09000 * 113.49057 * 105.68715 * 14 13 12 39 39 H 1.09001 * 113.54544 * 335.18765 * 14 13 12 40 40 H 1.08999 * 117.51767 * 145.04184 * 20 18 16 41 41 H 1.09007 * 117.49733 * 0.02562 * 20 18 16 42 42 H 1.08002 * 120.78849 * 359.97438 * 24 23 21 43 43 H 1.07999 * 120.41785 * 180.28575 * 25 24 23 44 44 H 1.07996 * 119.61560 * 179.75339 * 26 25 24 45 45 H 1.07990 * 119.61615 * 180.02562 * 28 27 26 46 46 H 1.09001 * 113.48849 * 87.85334 * 29 15 14 47 47 H 1.08989 * 113.49304 * 218.37118 * 29 15 14 48 48 H 1.09002 * 109.63614 * 111.52767 * 30 9 7 49 49 H 1.08997 * 109.64074 * 350.90988 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0562 -1.2219 -0.2681 9 7 1.3689 -2.3630 0.3415 10 6 1.8266 -3.6554 -0.1857 11 6 2.1077 -4.6029 0.9841 12 6 0.8479 -4.7331 1.8461 13 6 0.4426 -3.3556 2.3604 14 6 1.3128 -2.8329 3.5040 15 7 0.0835 -2.3240 4.1327 16 6 -0.2288 -1.3270 4.9842 17 8 0.6419 -0.5971 5.4087 18 6 -1.6597 -1.1190 5.4087 19 1 -2.2565 -2.0255 5.5100 20 6 -2.3690 0.1424 4.9100 21 6 -1.9495 0.0292 6.3774 22 1 -1.1052 0.6345 6.7074 23 6 -3.0382 -0.1796 7.3982 24 6 -2.7527 -0.1099 8.7535 25 6 -3.7869 -0.3026 9.6563 26 6 -5.0572 -0.5664 9.1792 27 7 -5.2919 -0.6254 7.8832 28 6 -4.3337 -0.4424 6.9956 29 6 -0.6547 -3.3851 3.4289 30 6 0.2065 -2.3418 1.2434 31 1 -0.4850 0.8400 -0.0004 32 1 1.0530 -4.0833 -0.8234 33 1 2.7380 -3.5103 -0.7657 34 1 2.3876 -5.5833 0.5988 35 1 2.9223 -4.2033 1.5881 36 1 1.0515 -5.3912 2.6908 37 1 0.0385 -5.1500 1.2467 38 1 2.0032 -2.0462 3.1999 39 1 1.7992 -3.6224 4.0770 40 1 -3.4324 0.0659 4.6833 41 1 -1.8006 0.8215 4.2745 42 1 -1.7494 0.0939 9.0974 43 1 -3.6018 -0.2507 10.7191 44 1 -5.8675 -0.7216 9.8761 45 1 -4.5643 -0.4979 5.9421 46 1 -0.6981 -4.3239 3.9812 47 1 -1.6298 -3.0658 3.0615 48 1 -0.6925 -2.6108 0.6887 49 1 0.0925 -1.3457 1.6709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982031400.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:14 Heat of formation + Delta-G solvation = 69.007213 kcal Electronic energy + Delta-G solvation = -29916.971901 eV Core-core repulsion = 26038.885029 eV Total energy + Delta-G solvation = -3878.086873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.98198 -41.31003 -39.93529 -37.75340 -37.24743 -34.72806 -33.39873 -32.24487 -31.84592 -31.26818 -28.12117 -27.25158 -26.96844 -25.47620 -24.81474 -24.08934 -23.88216 -22.26550 -21.78284 -20.16276 -19.40964 -18.61823 -18.50824 -17.97493 -17.36824 -16.80897 -16.75699 -16.68628 -16.20468 -15.76691 -15.38164 -15.26723 -15.05411 -14.91865 -14.77599 -14.43960 -14.31029 -13.98851 -13.86248 -13.53337 -13.47522 -13.14913 -13.07812 -12.98381 -12.77308 -12.71506 -12.58560 -12.25719 -12.16063 -12.00123 -11.72529 -11.61837 -11.46185 -11.32045 -10.97909 -10.76919 -10.67442 -10.54460 -10.41610 -9.82005 -9.68613 -8.67248 -7.90479 -5.31611 0.06720 0.29981 1.36243 1.41398 1.42188 1.47852 1.80296 2.45529 2.61387 3.01143 3.19893 3.21578 3.37961 3.53174 3.59177 3.69010 3.79111 3.87068 3.96177 4.02247 4.03953 4.07873 4.13700 4.30944 4.34289 4.37661 4.44106 4.53709 4.56757 4.63677 4.63907 4.75777 4.83169 4.86768 4.90580 4.96621 4.97747 5.05518 5.09675 5.19082 5.19850 5.30914 5.33150 5.36548 5.50057 5.58836 5.68871 5.74307 5.77121 6.37826 6.77197 6.99689 7.07541 7.14565 7.88093 8.36629 9.15137 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013176 B = 0.003036 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.616282 B = 9221.256104 C =10393.489243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.045 4.045 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.302 1.302 7 C -0.253 4.253 8 H 0.062 0.938 9 N -0.609 5.609 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.085 4.085 13 C -0.107 4.107 14 C 0.118 3.882 15 N -0.640 5.640 16 C 0.558 3.442 17 O -0.598 6.598 18 C -0.164 4.164 19 H 0.148 0.852 20 C -0.137 4.137 21 C -0.074 4.074 22 H 0.109 0.891 23 C -0.108 4.108 24 C -0.077 4.077 25 C -0.163 4.163 26 C 0.085 3.915 27 N -0.506 5.506 28 C 0.090 3.910 29 C 0.117 3.883 30 C 0.212 3.788 31 H 0.247 0.753 32 H 0.019 0.981 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.034 0.966 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.144 0.856 43 H 0.167 0.833 44 H 0.183 0.817 45 H 0.165 0.835 46 H 0.126 0.874 47 H 0.083 0.917 48 H 0.003 0.997 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.425 -9.585 16.506 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.241 4.241 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.230 1.230 7 C -0.383 4.383 8 H 0.079 0.921 9 N -0.333 5.333 10 C 0.012 3.988 11 C -0.164 4.164 12 C -0.123 4.123 13 C -0.109 4.109 14 C -0.005 4.005 15 N -0.372 5.372 16 C 0.349 3.651 17 O -0.480 6.480 18 C -0.185 4.185 19 H 0.166 0.834 20 C -0.174 4.174 21 C -0.094 4.094 22 H 0.127 0.873 23 C -0.110 4.110 24 C -0.103 4.103 25 C -0.182 4.182 26 C -0.072 4.072 27 N -0.215 5.215 28 C -0.066 4.066 29 C -0.005 4.005 30 C 0.086 3.914 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.123 0.877 40 H 0.155 0.845 41 H 0.101 0.899 42 H 0.162 0.838 43 H 0.184 0.816 44 H 0.200 0.800 45 H 0.182 0.818 46 H 0.143 0.857 47 H 0.102 0.898 48 H 0.021 0.979 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.953 -9.083 16.538 20.885 hybrid contribution 1.636 1.774 -0.204 2.422 sum -7.317 -7.309 16.334 19.333 Atomic orbital electron populations 1.70129 1.06080 1.25251 1.55749 1.25568 0.95998 1.00690 1.01820 0.85494 0.79021 0.81288 0.76504 1.19262 1.21284 1.23003 1.19426 0.92543 0.86139 1.40237 0.92057 1.44299 1.34613 1.02229 1.52110 1.21100 0.97015 0.85942 0.94788 1.21908 0.97751 0.99406 0.97306 1.21244 0.97888 0.93050 1.00104 1.22450 0.96107 0.98345 0.94035 1.22998 0.89032 0.96901 0.91560 1.49590 1.13567 1.29707 1.44346 1.19735 0.90207 0.78720 0.76407 1.90645 1.51902 1.47697 1.57754 1.22233 0.93086 0.96620 1.06515 0.83426 1.23186 1.02155 0.96616 0.95447 1.20853 0.98680 0.99910 0.89932 0.87254 1.20051 0.94542 1.02045 0.94359 1.21748 1.00979 0.95448 0.92083 1.22471 0.93240 1.00109 1.02365 1.23334 0.97337 0.94595 0.91938 1.67758 1.35971 1.13724 1.04024 1.22853 0.88075 0.95337 1.00302 1.23337 0.96950 0.90410 0.89805 1.20113 0.87521 0.95973 0.87810 0.94421 0.96260 0.93542 0.89407 0.93233 0.89013 0.90714 0.94693 0.87686 0.84477 0.89933 0.83790 0.81560 0.80050 0.81832 0.85676 0.89827 0.97935 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 11.16 21.65 0.24 -54.90 16 2 C -0.04 -2.58 4.93 84.86 0.42 -2.16 16 3 Si 0.95 47.34 29.59 68.60 2.03 49.37 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 7 C -0.25 -14.07 9.60 84.03 0.81 -13.27 16 8 H 0.06 3.38 7.88 -2.91 -0.02 3.36 16 9 N -0.61 -29.76 3.01 -699.69 -2.10 -31.86 16 10 C 0.14 5.30 6.45 86.35 0.56 5.85 16 11 C -0.12 -3.57 6.03 30.71 0.19 -3.38 16 12 C -0.09 -2.12 5.11 30.50 0.16 -1.96 16 13 C -0.11 -3.46 0.96 -52.41 -0.05 -3.51 16 14 C 0.12 4.10 7.53 83.34 0.63 4.72 16 15 N -0.64 -21.82 3.48 -857.37 -2.99 -24.81 16 16 C 0.56 20.65 7.86 87.66 0.69 21.34 16 17 O -0.60 -27.41 17.03 -3.05 -0.05 -27.47 16 18 C -0.16 -4.47 5.65 -11.52 -0.07 -4.54 16 19 H 0.15 3.19 8.14 -2.39 -0.02 3.17 16 20 C -0.14 -3.57 9.58 30.63 0.29 -3.28 16 21 C -0.07 -1.89 5.57 -11.53 -0.06 -1.95 16 22 H 0.11 3.20 7.67 -2.39 -0.02 3.18 16 23 C -0.11 -2.30 5.62 -19.77 -0.11 -2.41 16 24 C -0.08 -1.39 9.89 22.47 0.22 -1.17 16 25 C -0.16 -2.28 10.11 22.36 0.23 -2.06 16 26 C 0.08 1.34 11.18 84.69 0.95 2.29 16 27 N -0.51 -10.78 10.36 -195.85 -2.03 -12.80 16 28 C 0.09 1.89 10.47 84.67 0.89 2.77 16 29 C 0.12 3.02 7.60 83.43 0.63 3.66 16 30 C 0.21 9.65 4.43 86.15 0.38 10.04 16 31 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 1.52 8.02 -2.39 -0.02 1.50 16 36 H 0.09 1.66 8.10 -2.39 -0.02 1.64 16 37 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.03 1.55 8.11 -2.39 -0.02 1.54 16 39 H 0.11 2.93 8.07 -2.39 -0.02 2.91 16 40 H 0.14 2.72 6.21 -2.39 -0.01 2.71 16 41 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 42 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 44 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 45 H 0.16 2.95 6.04 -2.92 -0.02 2.93 16 46 H 0.13 2.17 8.10 -2.39 -0.02 2.15 16 47 H 0.08 2.10 8.12 -2.39 -0.02 2.09 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.05 2.60 5.93 -2.39 -0.01 2.59 16 Total: -1.00 -77.19 396.04 2.78 -74.41 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.94 Total: 17.08 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.74 Total: 10.98 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -6.88 Total: -124.37 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.47 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -77.19 2.78 -74.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982031400.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.414 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds