Wall clock time and date at job start Wed Apr 1 2020 00:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99712 * 2 1 4 4 H 1.48497 * 109.47086 * 91.93595 * 3 2 1 5 5 H 1.48500 * 109.47187 * 331.93459 * 3 2 1 6 6 H 1.48497 * 109.46776 * 211.93325 * 3 2 1 7 7 C 1.38808 * 120.00451 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99679 * 18.71782 * 7 2 1 9 9 N 1.36940 * 120.00152 * 198.71733 * 7 2 1 10 10 C 1.43464 * 118.93682 * 209.24737 * 9 7 2 11 11 C 1.53786 * 107.96277 * 273.60929 * 10 9 7 12 12 C 1.47140 * 111.84325 * 281.66674 * 11 10 9 13 13 N 1.48211 * 110.33837 * 58.30047 * 12 11 10 14 14 C 1.34777 * 119.97347 * 102.51654 * 13 12 11 15 15 O 1.21279 * 119.99915 * 354.82805 * 14 13 12 16 16 C 1.50700 * 120.00104 * 174.83394 * 14 13 12 17 17 C 1.52999 * 109.47056 * 174.21652 * 16 14 13 18 18 C 1.50696 * 109.47422 * 179.97438 * 17 16 14 19 19 C 1.34237 * 126.50470 * 265.02901 * 18 17 16 20 20 N 1.36835 * 109.92793 * 179.97438 * 19 18 17 21 21 H 0.96996 * 125.05934 * 180.02562 * 20 19 18 22 22 C 1.37680 * 109.87791 * 0.02562 * 20 19 18 23 23 C 1.39124 * 133.51110 * 180.02562 * 22 20 19 24 24 C 1.37749 * 119.78310 * 179.26010 * 23 22 20 25 25 C 1.38840 * 120.66063 * 0.63629 * 24 23 22 26 26 C 1.36627 * 120.52863 * 359.57964 * 25 24 23 27 27 C 1.39627 * 119.76271 * 0.02562 * 26 25 24 28 28 C 1.43627 * 120.06166 * 282.48671 * 13 12 11 29 29 C 1.48853 * 118.94005 * 28.98253 * 9 7 2 30 30 H 0.97002 * 120.00207 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.76244 * 33.23040 * 10 9 7 32 32 H 1.09002 * 109.75861 * 153.93886 * 10 9 7 33 33 H 1.09004 * 109.00659 * 42.27694 * 11 10 9 34 34 H 1.09006 * 109.00715 * 161.13729 * 11 10 9 35 35 H 1.09001 * 109.32780 * 178.55905 * 12 11 10 36 36 H 1.08996 * 109.32452 * 298.20714 * 12 11 10 37 37 H 1.08993 * 109.47322 * 294.21386 * 16 14 13 38 38 H 1.09001 * 109.47413 * 54.21918 * 16 14 13 39 39 H 1.09001 * 109.47419 * 300.00125 * 17 16 14 40 40 H 1.09007 * 109.47179 * 60.00073 * 17 16 14 41 41 H 1.07995 * 125.03515 * 359.92702 * 19 18 17 42 42 H 1.08004 * 120.10715 * 359.97438 * 23 22 20 43 43 H 1.07997 * 119.67598 * 180.24034 * 24 23 22 44 44 H 1.08003 * 119.73239 * 179.60235 * 25 24 23 45 45 H 1.07994 * 120.11457 * 179.97438 * 26 25 24 46 46 H 1.08994 * 108.87486 * 211.44724 * 28 13 12 47 47 H 1.08996 * 108.87102 * 329.88884 * 28 13 12 48 48 H 1.08998 * 109.47862 * 260.62544 * 29 9 7 49 49 H 1.09000 * 109.48132 * 20.65859 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5385 2.0229 1.3992 5 1 1.4277 2.6642 -0.6587 6 1 3.5266 1.4524 -0.7405 7 6 2.0103 -1.2021 0.0005 8 1 1.5132 -2.1127 -0.2992 9 7 3.3254 -1.2332 0.3811 10 6 4.1876 -2.2318 -0.1823 11 6 4.0646 -3.5029 0.6747 12 6 4.8409 -3.4005 1.9204 13 7 4.3894 -2.2333 2.7143 14 6 3.5900 -2.4152 3.7841 15 8 3.1642 -3.5211 4.0418 16 6 3.2252 -1.2443 4.6599 17 6 2.2027 -1.6900 5.7073 18 6 1.8383 -0.5193 6.5835 19 6 2.3863 -0.2079 7.7687 20 7 1.8015 0.9230 8.2702 21 1 2.0314 1.3417 9.1143 22 6 0.8381 1.3779 7.3981 23 6 -0.0352 2.4608 7.4155 24 6 -0.8951 2.6633 6.3586 25 6 -0.9093 1.7894 5.2798 26 6 -0.0634 0.7171 5.2442 27 6 0.8222 0.4975 6.3011 28 6 4.8034 -0.9085 2.3452 29 6 3.8155 -0.2260 1.3615 30 1 -0.4850 0.8400 -0.0004 31 1 3.8826 -2.4468 -1.2064 32 1 5.2183 -1.8774 -0.1715 33 1 3.0153 -3.6638 0.9224 34 1 4.4281 -4.3550 0.1002 35 1 4.7046 -4.3096 2.5062 36 1 5.8971 -3.2823 1.6785 37 1 4.1192 -0.8724 5.1602 38 1 2.7955 -0.4520 4.0469 39 1 1.3086 -2.0620 5.2070 40 1 2.6323 -2.4823 6.3203 41 1 3.1719 -0.7674 8.2547 42 1 -0.0308 3.1470 8.2495 43 1 -1.5696 3.5067 6.3721 44 1 -1.5942 1.9589 4.4621 45 1 -0.0803 0.0413 4.4020 46 1 4.8815 -0.2997 3.2458 47 1 5.7843 -0.9643 1.8733 48 1 4.3236 0.5797 0.8316 49 1 2.9711 0.1805 1.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989607208.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:28 Heat of formation + Delta-G solvation = 30.309301 kcal Electronic energy + Delta-G solvation = -30723.456915 eV Core-core repulsion = 26843.691975 eV Total energy + Delta-G solvation = -3879.764940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.18681 -41.20633 -38.79122 -37.82767 -35.99706 -35.27212 -34.22747 -33.36847 -31.91850 -30.26313 -29.68946 -29.22632 -27.59676 -25.58463 -25.17478 -23.76571 -23.21377 -22.66766 -21.61631 -20.26463 -19.86099 -18.91853 -18.66586 -17.75720 -17.54381 -17.30181 -16.95990 -16.53498 -16.30079 -16.00751 -15.47808 -15.38005 -15.17554 -15.03717 -14.77053 -14.61242 -14.49686 -14.13344 -14.00268 -13.76586 -13.43561 -13.29526 -13.19121 -13.09837 -12.84002 -12.62116 -12.58637 -12.55358 -12.28724 -12.01140 -11.90371 -11.78771 -11.59967 -11.58245 -11.50146 -10.80711 -10.68747 -10.47103 -9.55233 -9.14879 -8.80878 -8.54663 -8.14607 -5.49873 0.20257 0.67475 1.29797 1.39692 1.49219 1.64536 1.75700 2.22022 2.30356 2.42575 2.96405 3.06638 3.41130 3.65078 3.83205 3.89561 4.04145 4.12392 4.12589 4.17847 4.19211 4.25755 4.30771 4.40328 4.45746 4.51180 4.53882 4.61742 4.64162 4.73018 4.75973 4.82930 4.88621 4.90555 4.96030 4.96444 5.05180 5.07105 5.19065 5.22738 5.30590 5.49032 5.56412 5.70630 5.76399 5.78318 5.85231 5.91242 6.15467 6.24077 6.54012 6.79528 7.01028 7.27428 7.70004 8.01814 9.05922 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010268 B = 0.004538 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.151707 B = 6168.446468 C = 8030.486822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.034 4.034 3 Si 0.953 3.047 4 H -0.269 1.269 5 H -0.317 1.317 6 H -0.255 1.255 7 C -0.251 4.251 8 H 0.031 0.969 9 N -0.611 5.611 10 C 0.158 3.842 11 C -0.157 4.157 12 C 0.127 3.873 13 N -0.592 5.592 14 C 0.511 3.489 15 O -0.589 6.589 16 C -0.123 4.123 17 C -0.016 4.016 18 C -0.202 4.202 19 C 0.082 3.918 20 N -0.579 5.579 21 H 0.434 0.566 22 C 0.083 3.917 23 C -0.125 4.125 24 C -0.105 4.105 25 C -0.158 4.158 26 C -0.100 4.100 27 C -0.127 4.127 28 C 0.100 3.900 29 C 0.095 3.905 30 H 0.259 0.741 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.015 0.985 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.087 0.913 41 H 0.213 0.787 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.048 0.952 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.676 4.837 18.351 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.228 4.228 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.246 1.246 6 H -0.180 1.180 7 C -0.381 4.381 8 H 0.049 0.951 9 N -0.334 5.334 10 C 0.032 3.968 11 C -0.197 4.197 12 C 0.006 3.994 13 N -0.322 5.322 14 C 0.302 3.698 15 O -0.470 6.470 16 C -0.162 4.162 17 C -0.054 4.054 18 C -0.208 4.208 19 C -0.045 4.045 20 N -0.184 5.184 21 H 0.275 0.725 22 C -0.024 4.024 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.177 4.177 26 C -0.119 4.119 27 C -0.132 4.132 28 C -0.026 4.026 29 C -0.030 4.030 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.034 0.966 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.229 0.771 42 H 0.172 0.828 43 H 0.170 0.830 44 H 0.136 0.864 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.126 0.874 48 H 0.066 0.934 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 12.452 4.375 18.604 22.810 hybrid contribution -0.988 0.627 -0.715 1.371 sum 11.464 5.003 17.889 21.828 Atomic orbital electron populations 1.70003 1.07777 1.27052 1.55768 1.25996 0.95771 1.01212 0.99818 0.85884 0.78282 0.79429 0.78226 1.19480 1.24634 1.17954 1.18706 0.87038 0.92537 1.39789 0.95079 1.44010 1.06653 1.35676 1.47092 1.20546 0.94138 0.87559 0.94580 1.21665 0.99202 1.00720 0.98140 1.20691 0.99000 0.88409 0.91271 1.47545 1.49242 1.08052 1.27385 1.21170 0.76691 0.90438 0.81548 1.90604 1.53992 1.28328 1.74084 1.21651 1.01849 0.95670 0.97067 1.19404 0.96991 0.94312 0.94716 1.20264 1.02074 0.99767 0.98740 1.22097 0.99202 0.89052 0.94178 1.41650 1.31757 1.24358 1.20606 0.72515 1.18396 0.94978 0.97515 0.91526 1.20370 0.96505 0.96849 1.00834 1.21109 0.99219 0.99467 0.92632 1.20845 1.00611 0.96104 1.00173 1.20361 0.96190 0.98189 0.97153 1.19391 0.99847 0.98155 0.95818 1.21883 0.98162 0.83068 0.99463 1.22788 0.97162 0.92044 0.91047 0.93223 0.94112 0.90411 0.96593 0.89501 0.91217 0.87476 0.85476 0.91092 0.94930 0.89499 0.77083 0.82793 0.83026 0.86421 0.89489 0.88036 0.87420 0.93426 0.94134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.71 13.97 21.65 0.30 -62.40 16 2 C -0.03 -2.01 5.20 84.86 0.44 -1.57 16 3 Si 0.95 46.80 23.99 68.60 1.65 48.44 16 4 H -0.27 -12.31 6.57 99.48 0.65 -11.66 16 5 H -0.32 -16.10 7.11 99.48 0.71 -15.39 16 6 H -0.26 -11.57 6.66 99.48 0.66 -10.90 16 7 C -0.25 -14.68 9.67 84.03 0.81 -13.87 16 8 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 9 N -0.61 -28.17 2.28 -697.43 -1.59 -29.75 16 10 C 0.16 5.87 5.63 87.21 0.49 6.36 16 11 C -0.16 -5.47 5.64 29.04 0.16 -5.31 16 12 C 0.13 3.78 5.67 84.23 0.48 4.26 16 13 N -0.59 -19.22 2.46 -830.51 -2.04 -21.26 16 14 C 0.51 18.72 7.65 87.66 0.67 19.39 16 15 O -0.59 -25.72 15.46 -3.03 -0.05 -25.77 16 16 C -0.12 -3.76 4.10 29.85 0.12 -3.64 16 17 C -0.02 -0.49 5.05 29.85 0.15 -0.34 16 18 C -0.20 -5.59 5.57 -18.63 -0.10 -5.70 16 19 C 0.08 1.49 11.73 83.00 0.97 2.46 16 20 N -0.58 -9.75 6.07 -187.62 -1.14 -10.89 16 21 H 0.43 3.68 8.96 -92.71 -0.83 2.85 16 22 C 0.08 2.07 7.28 39.03 0.28 2.35 16 23 C -0.13 -2.72 10.08 22.37 0.23 -2.49 16 24 C -0.11 -2.59 10.01 22.30 0.22 -2.36 16 25 C -0.16 -5.09 9.97 22.04 0.22 -4.87 16 26 C -0.10 -3.72 10.05 22.23 0.22 -3.50 16 27 C -0.13 -4.11 6.35 -20.20 -0.13 -4.24 16 28 C 0.10 2.80 4.98 87.67 0.44 3.23 16 29 C 0.09 3.73 4.49 86.68 0.39 4.12 16 30 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 31 H 0.04 1.61 8.02 -2.39 -0.02 1.59 16 32 H 0.08 2.27 7.59 -2.39 -0.02 2.25 16 33 H 0.02 0.71 7.91 -2.38 -0.02 0.70 16 34 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 35 H 0.07 2.22 7.19 -2.39 -0.02 2.20 16 36 H 0.11 2.24 8.05 -2.39 -0.02 2.23 16 37 H 0.13 2.80 7.82 -2.39 -0.02 2.78 16 38 H 0.07 2.55 7.14 -2.39 -0.02 2.53 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 2.42 8.04 -2.38 -0.02 2.40 16 41 H 0.21 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 43 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 45 H 0.09 3.77 8.06 -2.91 -0.02 3.75 16 46 H 0.10 2.30 6.49 -2.39 -0.02 2.28 16 47 H 0.11 2.26 7.73 -2.39 -0.02 2.24 16 48 H 0.05 1.78 5.80 -2.39 -0.01 1.77 16 49 H 0.04 1.85 5.05 -2.39 -0.01 1.84 16 Total: -1.00 -85.62 382.41 3.24 -82.38 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.03 Total: 24.97 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 6.07 Total: -5.71 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -4.47 Total: -124.31 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.77 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.65 Total: 48.44 kcal Total: -85.62 3.24 -82.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989607208.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.688 kcal (2) G-P(sol) polarization free energy of solvation -85.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds