Wall clock time and date at job start Wed Apr 1 2020 00:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99935 * 2 1 4 4 H 1.48501 * 109.47355 * 240.00198 * 3 2 1 5 5 H 1.48498 * 109.47298 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46882 * 120.00687 * 3 2 1 7 7 C 1.38816 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99442 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00319 * 359.97438 * 7 2 1 10 10 C 1.49296 * 127.10295 * 0.02987 * 9 7 2 11 11 C 1.56233 * 106.50997 * 171.31684 * 10 9 7 12 12 C 1.52131 * 100.81121 * 336.55522 * 11 10 9 13 13 N 1.46501 * 111.09235 * 286.02692 * 12 11 10 14 14 C 1.34782 * 119.99448 * 288.30891 * 13 12 11 15 15 O 1.21279 * 120.00343 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99424 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.26247 * 300.69896 * 16 14 13 18 18 C 1.54338 * 110.29301 * 178.64556 * 16 14 13 19 19 C 1.54366 * 102.39166 * 214.63284 * 18 16 14 20 20 C 1.51225 * 105.11517 * 26.29625 * 19 18 16 21 21 C 1.38742 * 130.68790 * 162.87190 * 20 19 18 22 22 C 1.38584 * 118.55568 * 179.97438 * 21 20 19 23 23 C 1.38228 * 118.98528 * 0.02562 * 22 21 20 24 24 N 1.31681 * 120.80493 * 359.96920 * 23 22 21 25 25 C 1.32297 * 122.03336 * 0.03781 * 24 23 22 26 26 C 1.51229 * 122.53503 * 151.34613 * 12 11 10 27 27 C 1.55037 * 104.92379 * 219.13665 * 26 12 11 28 28 C 1.56283 * 105.91961 * 6.65975 * 27 26 12 29 29 C 1.42698 * 127.10520 * 180.02562 * 9 7 2 30 30 H 1.09006 * 108.16522 * 103.50090 * 29 9 7 31 31 H 0.96996 * 120.00206 * 359.97438 * 1 2 3 32 32 H 1.09002 * 110.05517 * 290.58200 * 10 9 7 33 33 H 1.09007 * 110.04942 * 52.05922 * 10 9 7 34 34 H 1.08997 * 111.14883 * 218.66177 * 11 10 9 35 35 H 1.09007 * 111.14717 * 94.44519 * 11 10 9 36 36 H 0.96998 * 120.00087 * 108.30792 * 13 12 11 37 37 H 1.08998 * 110.82261 * 332.86584 * 18 16 14 38 38 H 1.09000 * 110.82056 * 96.40991 * 18 16 14 39 39 H 1.09001 * 110.30783 * 145.20245 * 19 18 16 40 40 H 1.08994 * 110.31628 * 267.28332 * 19 18 16 41 41 H 1.07996 * 120.72593 * 359.95429 * 21 20 19 42 42 H 1.08000 * 120.50252 * 179.97438 * 22 21 20 43 43 H 1.07999 * 119.59413 * 179.97438 * 23 22 21 44 44 H 1.08999 * 110.41114 * 337.35970 * 26 12 11 45 45 H 1.09004 * 110.40681 * 99.79111 * 26 12 11 46 46 H 1.09005 * 109.84834 * 247.71571 * 27 26 12 47 47 H 1.09003 * 110.49097 * 125.94726 * 27 26 12 48 48 H 1.09005 * 110.97130 * 266.52477 * 28 27 26 49 49 H 1.09003 * 110.97240 * 142.76104 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1559 -2.5727 -0.0006 11 6 -0.4134 -4.0970 -0.2267 12 6 0.8805 -4.5060 -0.9145 13 7 0.9156 -4.0280 -2.2989 14 6 0.1239 -4.5981 -3.2288 15 8 -0.6171 -5.5070 -2.9197 16 6 0.1597 -4.1060 -4.6528 17 1 -0.1047 -3.0493 -4.6938 18 6 -0.8043 -4.9333 -5.5294 19 6 -0.0612 -4.9846 -6.8815 20 6 1.4025 -4.8321 -6.5330 21 6 2.5423 -5.1105 -7.2734 22 6 3.7805 -4.8711 -6.6988 23 6 3.8359 -4.3660 -5.4133 24 7 2.7328 -4.1134 -4.7399 25 6 1.5326 -4.3284 -5.2531 26 6 1.4531 -5.9015 -0.8064 27 6 2.9853 -5.6963 -0.6878 28 6 3.2027 -4.1538 -0.5616 29 6 1.8808 -3.7026 -0.0005 30 1 1.7902 -4.1097 1.0066 31 1 -0.4850 0.8400 0.0004 32 1 -0.5714 -2.2617 0.9579 33 1 -0.6045 -1.9941 -0.8083 34 1 -1.2728 -4.2583 -0.8774 35 1 -0.5370 -4.6198 0.7217 36 1 1.5086 -3.3013 -2.5462 37 1 -0.9357 -5.9354 -5.1212 38 1 -1.7640 -4.4273 -5.6337 39 1 -0.2354 -5.9418 -7.3729 40 1 -0.3862 -4.1657 -7.5232 41 1 2.4664 -5.5055 -8.2757 42 1 4.6881 -5.0769 -7.2467 43 1 4.7956 -4.1761 -4.9557 44 1 1.0772 -6.3984 0.0880 45 1 1.2093 -6.4823 -1.6959 46 1 3.4796 -6.0732 -1.5833 47 1 3.3710 -6.2037 0.1965 48 1 3.3864 -3.7045 -1.5376 49 1 4.0161 -3.9297 0.1286 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992159468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:52 Heat of formation + Delta-G solvation = 39.121270 kcal Electronic energy + Delta-G solvation = -31623.876295 eV Core-core repulsion = 27744.493470 eV Total energy + Delta-G solvation = -3879.382824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.08060 -40.12134 -38.13814 -35.88741 -34.36289 -33.10323 -32.56907 -31.57911 -29.88930 -29.37740 -28.19337 -26.86502 -25.62175 -23.99739 -23.57124 -22.57420 -21.61467 -20.43496 -19.99812 -19.43105 -18.52914 -17.21394 -16.74641 -16.42163 -16.31960 -15.64529 -15.31370 -14.77080 -14.53110 -14.49581 -14.19438 -13.87084 -13.61337 -13.54464 -13.40924 -13.16153 -12.73552 -12.50106 -12.25443 -11.98746 -11.86215 -11.74954 -11.60974 -11.32085 -11.22016 -11.07944 -10.95794 -10.84333 -10.69252 -10.40663 -10.25036 -9.97284 -9.89115 -9.84432 -9.62620 -9.53639 -9.27983 -9.08742 -8.72058 -8.62016 -8.27421 -6.81462 -5.70760 -3.04686 0.99011 1.19715 3.08597 3.40597 3.45476 3.46163 3.62070 3.84761 3.92580 4.29275 4.49467 4.67044 4.72814 4.76866 4.81415 5.01242 5.08447 5.20845 5.30305 5.35376 5.43215 5.48911 5.52796 5.54870 5.67058 5.68446 5.71927 5.85499 5.91623 5.93037 6.02118 6.05699 6.11442 6.12482 6.19062 6.23994 6.33905 6.44145 6.46830 6.53536 6.58899 6.61452 6.75725 6.92683 7.02845 7.34997 7.56436 7.64805 7.81308 7.95578 8.24026 8.26019 8.85105 9.17575 9.84099 10.53741 11.41548 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010841 B = 0.004354 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.121920 B = 6429.346925 C = 6951.912600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.133 3.867 13 N -0.673 5.673 14 C 0.526 3.474 15 O -0.553 6.553 16 C -0.065 4.065 17 H 0.119 0.881 18 C -0.101 4.101 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.067 4.067 22 C -0.175 4.175 23 C 0.106 3.894 24 N -0.464 5.464 25 C 0.132 3.868 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.114 4.114 29 C 0.159 3.841 30 H 0.020 0.980 31 H 0.252 0.748 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.410 0.590 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.890 -11.677 -13.872 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.306 5.306 10 C 0.055 3.945 11 C -0.178 4.178 12 C 0.045 3.955 13 N -0.322 5.322 14 C 0.310 3.690 15 O -0.432 6.432 16 C -0.087 4.087 17 H 0.136 0.864 18 C -0.139 4.139 19 C -0.116 4.116 20 C -0.148 4.148 21 C -0.093 4.093 22 C -0.195 4.195 23 C -0.051 4.051 24 N -0.172 5.172 25 C -0.006 4.006 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.152 4.152 29 C 0.049 3.951 30 H 0.037 0.963 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.247 0.753 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.403 -11.686 -12.747 17.624 hybrid contribution 0.869 1.087 -0.969 1.695 sum 4.272 -10.599 -13.716 17.852 Atomic orbital electron populations 1.69909 1.04860 1.25136 1.56786 1.24768 0.95597 0.97527 1.02217 0.86260 0.78501 0.83481 0.77868 1.21232 1.21704 1.21236 1.18967 0.90242 0.82296 1.44015 0.90408 1.43644 1.01705 0.99258 1.86038 1.22001 0.83235 0.88590 1.00642 1.22782 0.96457 0.99471 0.99041 1.21495 0.98298 0.93824 0.81924 1.45634 1.41608 1.37341 1.07662 1.19902 0.80182 0.82664 0.86253 1.90624 1.40807 1.30331 1.81487 1.20941 0.90787 1.03090 0.93873 0.86363 1.22260 0.97234 1.01976 0.92426 1.21013 0.89499 1.02777 0.98340 1.21434 0.96518 1.00604 0.96206 1.21022 0.91250 0.97380 0.99647 1.22075 0.98231 1.01857 0.97336 1.22662 0.96408 0.94716 0.91340 1.66844 0.97576 1.15302 1.37510 1.21422 0.92498 0.94786 0.91904 1.21717 0.94963 0.96272 1.01836 1.22661 0.95801 0.96112 1.00590 1.21841 0.97587 0.94432 1.01390 1.20818 0.91896 0.87307 0.95126 0.96325 0.93725 0.94764 0.91772 0.91429 0.91806 0.75275 0.88766 0.89520 0.90217 0.89755 0.85157 0.84697 0.82512 0.91559 0.91451 0.92520 0.92241 0.91002 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.55 55.49 0.59 -25.99 16 2 C 0.00 -0.13 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.12 10.29 -15.06 -0.15 -6.27 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.58 -14.43 3.12 -162.66 -0.51 -14.94 16 10 C 0.18 4.37 5.33 -0.76 0.00 4.37 16 11 C -0.14 -2.85 6.22 -25.44 -0.16 -3.01 16 12 C 0.13 2.55 0.42 -130.69 -0.05 2.49 16 13 N -0.67 -12.67 4.17 -46.56 -0.19 -12.86 16 14 C 0.53 9.39 6.48 -10.98 -0.07 9.32 16 15 O -0.55 -10.94 13.65 5.56 0.08 -10.87 16 16 C -0.06 -0.94 3.26 -91.84 -0.30 -1.24 16 17 H 0.12 1.67 8.14 -51.93 -0.42 1.25 16 18 C -0.10 -1.18 6.33 -25.31 -0.16 -1.34 16 19 C -0.08 -0.75 6.77 -26.91 -0.18 -0.93 16 20 C -0.15 -1.69 6.16 -104.20 -0.64 -2.34 16 21 C -0.07 -0.66 10.17 -39.27 -0.40 -1.06 16 22 C -0.18 -1.68 10.12 -39.46 -0.40 -2.08 16 23 C 0.11 1.25 11.18 -17.62 -0.20 1.06 16 24 N -0.46 -6.87 9.74 -9.19 -0.09 -6.96 16 25 C 0.13 1.87 6.60 -82.04 -0.54 1.33 16 26 C -0.11 -1.86 6.01 -26.55 -0.16 -2.02 16 27 C -0.11 -1.75 6.91 -23.89 -0.17 -1.92 16 28 C -0.11 -2.03 6.46 -26.20 -0.17 -2.20 16 29 C 0.16 3.30 2.62 -68.70 -0.18 3.12 16 30 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.03 0.91 7.98 -51.93 -0.41 0.49 16 33 H 0.06 1.73 7.05 -51.93 -0.37 1.37 16 34 H 0.07 1.42 7.18 -51.93 -0.37 1.04 16 35 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 36 H 0.41 8.21 7.36 -40.82 -0.30 7.91 16 37 H 0.09 1.24 7.04 -51.93 -0.37 0.88 16 38 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.22 6.84 -51.93 -0.36 0.86 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.33 7.38 -51.93 -0.38 0.95 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -31.42 381.31 -11.03 -42.45 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -7.59 Total: 9.51 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.03 Total: -2.94 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.21 Total: -60.74 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.42 -11.03 -42.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992159468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.572 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds