Wall clock time and date at job start Wed Apr 1 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00128 * 2 1 4 4 H 1.48491 * 109.47209 * 239.99813 * 3 2 1 5 5 H 1.48500 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47160 * 119.99774 * 3 2 1 7 7 C 1.38817 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.47375 * 125.58082 * 0.02562 * 9 7 2 11 11 C 1.54871 * 104.82071 * 204.68407 * 10 9 7 12 12 C 1.54911 * 101.76486 * 322.92290 * 11 10 9 13 13 N 1.46498 * 112.33436 * 273.79484 * 12 11 10 14 14 C 1.34777 * 119.99632 * 295.64047 * 13 12 11 15 15 O 1.21277 * 120.00405 * 359.97438 * 14 13 12 16 16 C 1.50709 * 119.99829 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.25780 * 60.60244 * 16 14 13 18 18 C 1.54338 * 110.29159 * 182.75931 * 16 14 13 19 19 C 1.54366 * 102.38750 * 145.27980 * 18 16 14 20 20 C 1.51220 * 105.12090 * 333.70517 * 19 18 16 21 21 C 1.38739 * 130.69856 * 197.14456 * 20 19 18 22 22 C 1.38585 * 118.55796 * 179.97438 * 21 20 19 23 23 C 1.38228 * 118.98917 * 0.02562 * 22 21 20 24 24 N 1.31688 * 120.80197 * 0.02562 * 23 22 21 25 25 C 1.32293 * 122.02739 * 0.02562 * 24 23 22 26 26 C 1.53583 * 109.57314 * 148.31467 * 12 11 10 27 27 C 1.54221 * 106.67773 * 246.71621 * 26 12 11 28 28 C 1.55574 * 103.95778 * 25.31386 * 27 26 12 29 29 C 1.46985 * 125.57826 * 180.02562 * 9 7 2 30 30 H 1.09000 * 111.81073 * 300.94216 * 29 9 7 31 31 H 0.97000 * 120.00153 * 359.97438 * 1 2 3 32 32 H 1.08993 * 110.36871 * 85.84606 * 10 9 7 33 33 H 1.08997 * 110.36569 * 323.51546 * 10 9 7 34 34 H 1.08997 * 110.96563 * 204.80441 * 11 10 9 35 35 H 1.09001 * 111.00292 * 81.05452 * 11 10 9 36 36 H 0.97000 * 120.00761 * 115.64416 * 13 12 11 37 37 H 1.09004 * 110.82170 * 263.49955 * 18 16 14 38 38 H 1.08996 * 110.82815 * 27.05202 * 18 16 14 39 39 H 1.08997 * 110.31331 * 214.79384 * 19 18 16 40 40 H 1.09007 * 110.31460 * 92.61493 * 19 18 16 41 41 H 1.07995 * 120.72447 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.50252 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.59522 * 179.97438 * 23 22 21 44 44 H 1.09010 * 110.01206 * 6.01635 * 26 12 11 45 45 H 1.08991 * 110.01982 * 127.35763 * 26 12 11 46 46 H 1.08994 * 110.49902 * 143.60373 * 27 26 12 47 47 H 1.09005 * 110.49173 * 266.13275 * 27 26 12 48 48 H 1.08991 * 110.28972 * 203.53065 * 28 27 26 49 49 H 1.08997 * 111.41410 * 80.14070 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1411 -2.5314 0.0017 11 6 -0.4031 -3.9233 0.6282 12 6 0.7721 -4.7539 0.0550 13 7 0.4652 -5.3175 -1.2620 14 6 -0.5201 -6.2278 -1.3923 15 8 -1.1523 -6.5807 -0.4194 16 6 -0.8355 -6.8081 -2.7470 17 1 0.0348 -7.3286 -3.1465 18 6 -2.0392 -7.7692 -2.6505 19 6 -2.7512 -7.5449 -4.0018 20 6 -2.3754 -6.1403 -4.4172 21 6 -2.9466 -5.2904 -5.3533 22 6 -2.3898 -4.0344 -5.5347 23 6 -1.2891 -3.6742 -4.7800 24 7 -0.7724 -4.5075 -3.9009 25 6 -1.2742 -5.7148 -3.6993 26 6 1.1818 -5.8331 1.0681 27 6 2.5986 -5.4676 1.5554 28 6 2.6839 -3.9291 1.3410 29 6 1.9334 -3.7264 0.0028 30 1 2.5746 -3.8807 -0.8650 31 1 -0.4850 0.8400 0.0004 32 1 -0.5259 -2.4955 -1.0174 33 1 -0.5986 -1.7500 0.6086 34 1 -1.3615 -4.3248 0.2994 35 1 -0.3542 -3.8775 1.7162 36 1 0.9711 -5.0356 -2.0402 37 1 -1.7038 -8.8020 -2.5561 38 1 -2.6891 -7.4942 -1.8198 39 1 -3.8311 -7.6270 -3.8787 40 1 -2.3978 -8.2651 -4.7398 41 1 -3.8070 -5.6005 -5.9276 42 1 -2.8089 -3.3477 -6.2552 43 1 -0.8470 -2.6979 -4.9137 44 1 0.4878 -5.8383 1.9087 45 1 1.1925 -6.8112 0.5874 46 1 2.7126 -5.7083 2.6123 47 1 3.3518 -5.9874 0.9632 48 1 3.7243 -3.6173 1.2497 49 1 2.1880 -3.3869 2.1462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992159470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:55 Heat of formation + Delta-G solvation = 28.024118 kcal Electronic energy + Delta-G solvation = -31243.272561 eV Core-core repulsion = 27363.408528 eV Total energy + Delta-G solvation = -3879.864033 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06349 -39.80618 -38.10204 -35.94629 -34.14665 -33.37396 -32.61095 -31.32643 -29.82032 -29.35525 -28.29315 -26.64390 -25.73240 -23.76130 -23.55868 -22.55466 -21.63316 -20.59510 -19.89915 -19.26841 -18.59421 -17.16377 -16.91700 -16.77827 -16.29023 -15.63339 -15.32328 -14.86743 -14.74376 -14.30040 -13.91869 -13.81033 -13.55761 -13.47413 -13.20695 -13.04168 -12.84687 -12.66142 -12.14037 -12.05313 -11.78886 -11.78318 -11.64074 -11.46388 -11.16145 -11.07413 -10.90787 -10.77803 -10.58677 -10.43269 -10.10231 -10.01371 -9.87166 -9.81257 -9.64622 -9.52988 -9.37185 -9.19987 -8.72986 -8.57611 -8.36807 -6.76238 -5.56801 -2.99334 1.02782 1.24632 2.91498 3.43316 3.47465 3.48832 3.51966 3.78765 3.92045 4.23964 4.53327 4.65491 4.76346 4.85408 4.87755 4.99689 5.10870 5.23646 5.25780 5.30547 5.38104 5.42209 5.50321 5.58988 5.65297 5.70440 5.76150 5.84158 5.92443 5.95977 6.07865 6.08450 6.10436 6.13984 6.16752 6.23718 6.38820 6.45470 6.51257 6.63070 6.64853 6.69404 6.86764 6.90329 7.09050 7.26356 7.66863 7.73384 7.94899 8.00532 8.03152 8.44821 8.64959 9.29280 9.90569 10.55943 11.45491 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.004344 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.831385 B = 6443.428420 C = 8360.194389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.217 4.217 8 H 0.075 0.925 9 N -0.594 5.594 10 C 0.156 3.844 11 C -0.140 4.140 12 C 0.162 3.838 13 N -0.690 5.690 14 C 0.525 3.475 15 O -0.541 6.541 16 C -0.061 4.061 17 H 0.115 0.885 18 C -0.101 4.101 19 C -0.078 4.078 20 C -0.148 4.148 21 C -0.067 4.067 22 C -0.172 4.172 23 C 0.114 3.886 24 N -0.463 5.463 25 C 0.123 3.877 26 C -0.109 4.109 27 C -0.125 4.125 28 C -0.128 4.128 29 C 0.162 3.838 30 H 0.045 0.955 31 H 0.251 0.749 32 H 0.011 0.989 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.405 0.595 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.161 0.839 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.056 0.944 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 -15.601 -9.567 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.345 4.345 8 H 0.093 0.907 9 N -0.318 5.318 10 C 0.032 3.968 11 C -0.179 4.179 12 C 0.075 3.925 13 N -0.339 5.339 14 C 0.309 3.691 15 O -0.419 6.419 16 C -0.083 4.083 17 H 0.133 0.867 18 C -0.139 4.139 19 C -0.115 4.115 20 C -0.150 4.150 21 C -0.093 4.093 22 C -0.192 4.192 23 C -0.044 4.044 24 N -0.170 5.170 25 C -0.015 4.015 26 C -0.148 4.148 27 C -0.163 4.163 28 C -0.168 4.168 29 C 0.054 3.946 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.241 0.759 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.178 0.822 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.436 -15.298 -8.397 17.786 hybrid contribution -0.015 0.962 -1.146 1.496 sum -3.451 -14.336 -9.543 17.564 Atomic orbital electron populations 1.69810 1.04831 1.24600 1.57660 1.24749 0.95615 0.97512 1.02672 0.86207 0.78394 0.83400 0.77809 1.21355 1.21723 1.21264 1.18981 0.90354 0.82402 1.42804 0.90684 1.44492 1.01815 0.99129 1.86373 1.21923 0.84277 0.92674 0.97966 1.23283 0.96656 0.98284 0.99707 1.21630 0.96668 0.92250 0.81930 1.45840 1.35734 1.41539 1.10756 1.19980 0.79949 0.79542 0.89611 1.90661 1.50321 1.61210 1.39675 1.20907 1.01107 0.93906 0.92428 0.86701 1.22267 0.95262 0.98645 0.97763 1.20994 1.01415 0.92033 0.97096 1.21390 0.97789 0.97794 0.98021 1.21018 0.98951 0.93061 0.96266 1.22115 0.98208 0.97083 1.01753 1.22726 0.92932 0.98469 0.90266 1.66842 1.31505 1.02228 1.16471 1.21386 0.93097 0.91650 0.95385 1.22243 0.96545 0.97643 0.98394 1.22505 0.96417 0.97312 1.00090 1.23076 1.00276 0.93717 0.99746 1.21787 0.91725 0.85959 0.95126 0.93715 0.93864 0.97105 0.87778 0.91932 0.91688 0.75941 0.89608 0.88691 0.90152 0.89873 0.85137 0.84545 0.82220 0.91312 0.92370 0.92393 0.92337 0.92515 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 10.07 55.49 0.56 -26.50 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.22 -5.97 10.01 -15.06 -0.15 -6.12 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -15.05 3.03 -161.12 -0.49 -15.53 16 10 C 0.16 3.98 5.91 -2.58 -0.02 3.96 16 11 C -0.14 -3.04 5.77 -24.74 -0.14 -3.18 16 12 C 0.16 3.07 0.73 -129.37 -0.09 2.98 16 13 N -0.69 -11.93 5.01 -45.35 -0.23 -12.16 16 14 C 0.52 8.62 6.33 -10.98 -0.07 8.55 16 15 O -0.54 -10.19 13.39 5.56 0.07 -10.12 16 16 C -0.06 -0.78 3.26 -91.84 -0.30 -1.08 16 17 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.06 6.32 -25.31 -0.16 -1.22 16 19 C -0.08 -0.69 6.77 -26.91 -0.18 -0.88 16 20 C -0.15 -1.73 6.16 -104.21 -0.64 -2.37 16 21 C -0.07 -0.70 10.17 -39.27 -0.40 -1.10 16 22 C -0.17 -1.88 10.12 -39.46 -0.40 -2.28 16 23 C 0.11 1.55 11.18 -17.62 -0.20 1.35 16 24 N -0.46 -7.28 9.59 -9.19 -0.09 -7.36 16 25 C 0.12 1.72 6.57 -82.04 -0.54 1.18 16 26 C -0.11 -1.86 5.24 -25.79 -0.14 -1.99 16 27 C -0.13 -1.95 6.87 -24.72 -0.17 -2.11 16 28 C -0.13 -2.40 6.26 -24.43 -0.15 -2.55 16 29 C 0.16 3.38 3.65 -65.60 -0.24 3.14 16 30 H 0.05 0.94 7.98 -51.93 -0.41 0.52 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 2.99 5.83 -51.93 -0.30 2.68 16 34 H 0.06 1.40 6.82 -51.93 -0.35 1.04 16 35 H 0.06 1.40 7.65 -51.93 -0.40 1.00 16 36 H 0.41 6.86 7.89 -40.82 -0.32 6.54 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.20 7.06 -51.93 -0.37 0.83 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 44 H 0.07 1.21 7.41 -51.92 -0.38 0.82 16 45 H 0.06 0.96 7.40 -51.93 -0.38 0.57 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.57 8.09 -51.93 -0.42 1.15 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -32.38 380.31 -11.09 -43.47 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -7.54 Total: 9.45 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -4.08 Total: -4.10 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.24 Total: -61.56 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.38 -11.09 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992159470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.494 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds