Wall clock time and date at job start Wed Apr 1 2020 00:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 120.00128 * 2 1 4 4 H 1.48491 * 109.47209 * 239.99813 * 3 2 1 5 5 H 1.48500 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47160 * 119.99774 * 3 2 1 7 7 C 1.38817 * 120.00304 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99770 * 359.97438 * 7 2 1 10 10 C 1.47375 * 125.58082 * 0.02562 * 9 7 2 11 11 C 1.54871 * 104.82071 * 204.68407 * 10 9 7 12 12 C 1.54911 * 101.76486 * 322.92290 * 11 10 9 13 13 N 1.46498 * 112.33436 * 273.79484 * 12 11 10 14 14 C 1.34777 * 119.99632 * 295.64047 * 13 12 11 15 15 O 1.21277 * 120.00405 * 359.97438 * 14 13 12 16 16 C 1.50709 * 119.99829 * 180.02562 * 14 13 12 17 17 H 1.08997 * 110.25780 * 60.60244 * 16 14 13 18 18 C 1.54338 * 110.29159 * 182.75931 * 16 14 13 19 19 C 1.54366 * 102.38750 * 145.27980 * 18 16 14 20 20 C 1.51220 * 105.12090 * 333.70517 * 19 18 16 21 21 C 1.38739 * 130.69856 * 197.14456 * 20 19 18 22 22 C 1.38585 * 118.55796 * 179.97438 * 21 20 19 23 23 C 1.38228 * 118.98917 * 0.02562 * 22 21 20 24 24 N 1.31688 * 120.80197 * 0.02562 * 23 22 21 25 25 C 1.32293 * 122.02739 * 0.02562 * 24 23 22 26 26 C 1.53583 * 109.57314 * 148.31467 * 12 11 10 27 27 C 1.54221 * 106.67773 * 246.71621 * 26 12 11 28 28 C 1.55574 * 103.95778 * 25.31386 * 27 26 12 29 29 C 1.46985 * 125.57826 * 180.02562 * 9 7 2 30 30 H 1.09000 * 111.81073 * 300.94216 * 29 9 7 31 31 H 0.97000 * 120.00153 * 359.97438 * 1 2 3 32 32 H 1.08993 * 110.36871 * 85.84606 * 10 9 7 33 33 H 1.08997 * 110.36569 * 323.51546 * 10 9 7 34 34 H 1.08997 * 110.96563 * 204.80441 * 11 10 9 35 35 H 1.09001 * 111.00292 * 81.05452 * 11 10 9 36 36 H 0.97000 * 120.00761 * 115.64416 * 13 12 11 37 37 H 1.09004 * 110.82170 * 263.49955 * 18 16 14 38 38 H 1.08996 * 110.82815 * 27.05202 * 18 16 14 39 39 H 1.08997 * 110.31331 * 214.79384 * 19 18 16 40 40 H 1.09007 * 110.31460 * 92.61493 * 19 18 16 41 41 H 1.07995 * 120.72447 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.50252 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.59522 * 179.97438 * 23 22 21 44 44 H 1.09010 * 110.01206 * 6.01635 * 26 12 11 45 45 H 1.08991 * 110.01982 * 127.35763 * 26 12 11 46 46 H 1.08994 * 110.49902 * 143.60373 * 27 26 12 47 47 H 1.09005 * 110.49173 * 266.13275 * 27 26 12 48 48 H 1.08991 * 110.28972 * 203.53065 * 28 27 26 49 49 H 1.08997 * 111.41410 * 80.14070 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 -0.1411 -2.5314 0.0017 11 6 -0.4031 -3.9233 0.6282 12 6 0.7721 -4.7539 0.0550 13 7 0.4652 -5.3175 -1.2620 14 6 -0.5201 -6.2278 -1.3923 15 8 -1.1523 -6.5807 -0.4194 16 6 -0.8355 -6.8081 -2.7470 17 1 0.0348 -7.3286 -3.1465 18 6 -2.0392 -7.7692 -2.6505 19 6 -2.7512 -7.5449 -4.0018 20 6 -2.3754 -6.1403 -4.4172 21 6 -2.9466 -5.2904 -5.3533 22 6 -2.3898 -4.0344 -5.5347 23 6 -1.2891 -3.6742 -4.7800 24 7 -0.7724 -4.5075 -3.9009 25 6 -1.2742 -5.7148 -3.6993 26 6 1.1818 -5.8331 1.0681 27 6 2.5986 -5.4676 1.5554 28 6 2.6839 -3.9291 1.3410 29 6 1.9334 -3.7264 0.0028 30 1 2.5746 -3.8807 -0.8650 31 1 -0.4850 0.8400 0.0004 32 1 -0.5259 -2.4955 -1.0174 33 1 -0.5986 -1.7500 0.6086 34 1 -1.3615 -4.3248 0.2994 35 1 -0.3542 -3.8775 1.7162 36 1 0.9711 -5.0356 -2.0402 37 1 -1.7038 -8.8020 -2.5561 38 1 -2.6891 -7.4942 -1.8198 39 1 -3.8311 -7.6270 -3.8787 40 1 -2.3978 -8.2651 -4.7398 41 1 -3.8070 -5.6005 -5.9276 42 1 -2.8089 -3.3477 -6.2552 43 1 -0.8470 -2.6979 -4.9137 44 1 0.4878 -5.8383 1.9087 45 1 1.1925 -6.8112 0.5874 46 1 2.7126 -5.7083 2.6123 47 1 3.3518 -5.9874 0.9632 48 1 3.7243 -3.6173 1.2497 49 1 2.1880 -3.3869 2.1462 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992159470.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:55 Heat of formation + Delta-G solvation = 8.559746 kcal Electronic energy + Delta-G solvation = -31244.116600 eV Core-core repulsion = 27363.408528 eV Total energy + Delta-G solvation = -3880.708071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12199 -41.20486 -39.51677 -36.93317 -35.99827 -34.73346 -33.64568 -33.25107 -31.53719 -30.30087 -29.33922 -28.42287 -27.26915 -25.73730 -24.45947 -23.69924 -22.67615 -22.04442 -21.51292 -20.62322 -20.11765 -18.89081 -18.40510 -17.70098 -17.28085 -17.19635 -16.84538 -16.32443 -15.95361 -15.74738 -15.40847 -15.09187 -14.97233 -14.61886 -14.52482 -14.36364 -14.10092 -13.89168 -13.73324 -13.44852 -13.22355 -12.96827 -12.90002 -12.81694 -12.64138 -12.59047 -12.49207 -12.28523 -12.07078 -11.96626 -11.87917 -11.68255 -11.57073 -11.46981 -11.26816 -10.86406 -10.71194 -10.60670 -10.22062 -9.87072 -9.67542 -8.85568 -7.72381 -5.17406 0.09899 0.35507 1.46338 1.49701 1.55714 1.64274 2.23895 2.51614 2.81169 2.97576 3.35557 3.37427 3.39145 3.66408 3.75021 3.90294 3.95707 3.97306 4.00494 4.08351 4.20699 4.31466 4.35756 4.42310 4.44937 4.46727 4.58132 4.61366 4.65898 4.67735 4.80786 4.83608 4.90479 4.95563 5.00382 5.08445 5.09673 5.17727 5.20872 5.22957 5.27357 5.31356 5.32046 5.47855 5.52159 5.64962 5.73442 5.76689 5.83847 6.30372 6.64967 7.03925 7.12297 7.31186 7.81106 8.46474 9.28968 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011122 B = 0.004344 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.831385 B = 6443.428420 C = 8360.194389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.225 4.225 8 H 0.084 0.916 9 N -0.609 5.609 10 C 0.172 3.828 11 C -0.127 4.127 12 C 0.170 3.830 13 N -0.692 5.692 14 C 0.521 3.479 15 O -0.567 6.567 16 C -0.057 4.057 17 H 0.140 0.860 18 C -0.097 4.097 19 C -0.069 4.069 20 C -0.148 4.148 21 C -0.068 4.068 22 C -0.163 4.163 23 C 0.080 3.920 24 N -0.503 5.503 25 C 0.091 3.909 26 C -0.102 4.102 27 C -0.109 4.109 28 C -0.123 4.123 29 C 0.154 3.846 30 H 0.049 0.951 31 H 0.243 0.757 32 H -0.025 1.025 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.406 0.594 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.113 0.887 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -18.165 -10.671 21.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.202 1.202 7 C -0.354 4.354 8 H 0.102 0.898 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.167 4.167 12 C 0.083 3.917 13 N -0.341 5.341 14 C 0.308 3.692 15 O -0.447 6.447 16 C -0.079 4.079 17 H 0.157 0.843 18 C -0.136 4.136 19 C -0.106 4.106 20 C -0.150 4.150 21 C -0.093 4.093 22 C -0.183 4.183 23 C -0.077 4.077 24 N -0.212 5.212 25 C -0.047 4.047 26 C -0.141 4.141 27 C -0.147 4.147 28 C -0.163 4.163 29 C 0.047 3.953 30 H 0.067 0.933 31 H 0.053 0.947 32 H -0.007 1.007 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.242 0.758 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.185 0.815 42 H 0.183 0.817 43 H 0.171 0.829 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.810 -17.898 -9.509 20.461 hybrid contribution -0.241 1.779 -0.846 1.985 sum -3.051 -16.118 -10.355 19.399 Atomic orbital electron populations 1.70080 1.06371 1.24694 1.59088 1.25590 0.96424 1.00883 1.03138 0.85155 0.77042 0.78968 0.78191 1.20458 1.22414 1.20226 1.19376 0.90945 0.83393 1.41720 0.89827 1.44677 1.01756 1.00547 1.86317 1.21500 0.84697 0.93798 0.95364 1.23075 0.97557 0.96623 0.99403 1.21486 0.94270 0.92510 0.83425 1.45866 1.36409 1.41795 1.10008 1.20680 0.78821 0.78751 0.90980 1.90642 1.50878 1.62071 1.41107 1.21045 1.03109 0.94066 0.89643 0.84271 1.22300 0.93949 0.99391 0.97915 1.21060 1.02254 0.90743 0.96524 1.21820 0.96566 0.99234 0.97363 1.21467 0.99559 0.92351 0.95961 1.22408 0.96788 0.97976 1.01114 1.22855 0.94747 0.98543 0.91550 1.66717 1.33181 1.03537 1.17725 1.21664 0.94622 0.91574 0.96793 1.22176 0.97416 0.97141 0.97386 1.22447 0.95815 0.94444 1.01971 1.22923 0.99925 0.96258 0.97200 1.22041 0.92592 0.84193 0.96485 0.93344 0.94699 1.00731 0.91335 0.93017 0.91698 0.75833 0.86835 0.91267 0.88541 0.86876 0.81467 0.81702 0.82921 0.91982 0.91250 0.90160 0.89893 0.91620 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.83 10.07 21.65 0.22 -58.62 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.23 -12.70 10.01 84.04 0.84 -11.86 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.61 -32.00 3.03 -663.68 -2.01 -34.01 16 10 C 0.17 9.32 5.91 86.85 0.51 9.83 16 11 C -0.13 -5.77 5.77 31.89 0.18 -5.59 16 12 C 0.17 6.53 0.73 5.19 0.00 6.53 16 13 N -0.69 -24.24 5.01 -415.79 -2.08 -26.32 16 14 C 0.52 17.10 6.33 87.66 0.55 17.65 16 15 O -0.57 -21.43 13.39 -3.02 -0.04 -21.47 16 16 C -0.06 -1.38 3.26 -11.58 -0.04 -1.42 16 17 H 0.14 2.62 8.14 -2.39 -0.02 2.60 16 18 C -0.10 -1.83 6.32 31.51 0.20 -1.63 16 19 C -0.07 -0.99 6.77 30.48 0.21 -0.78 16 20 C -0.15 -3.16 6.16 -19.60 -0.12 -3.28 16 21 C -0.07 -1.26 10.17 22.47 0.23 -1.03 16 22 C -0.16 -3.42 10.12 22.35 0.23 -3.20 16 23 C 0.08 2.29 11.18 84.71 0.95 3.24 16 24 N -0.50 -16.49 9.59 -182.98 -1.75 -18.25 16 25 C 0.09 2.53 6.57 42.72 0.28 2.81 16 26 C -0.10 -3.32 5.24 31.20 0.16 -3.16 16 27 C -0.11 -3.08 6.87 31.89 0.22 -2.86 16 28 C -0.12 -4.49 6.26 32.08 0.20 -4.29 16 29 C 0.15 6.45 3.65 46.24 0.17 6.62 16 30 H 0.05 2.02 7.98 -2.39 -0.02 2.00 16 31 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 32 H -0.03 -1.52 8.14 -2.39 -0.02 -1.54 16 33 H 0.07 4.23 5.83 -2.39 -0.01 4.21 16 34 H 0.05 2.44 6.82 -2.39 -0.02 2.42 16 35 H 0.06 2.91 7.65 -2.39 -0.02 2.89 16 36 H 0.41 14.10 7.89 -92.71 -0.73 13.37 16 37 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.07 1.68 7.06 -2.39 -0.02 1.67 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 41 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.06 2.11 7.41 -2.38 -0.02 2.09 16 45 H 0.07 2.13 7.40 -2.39 -0.02 2.11 16 46 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 48 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 Total: -1.00 -75.00 380.31 1.83 -73.17 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.23 Total: 32.83 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 5.24 Total: 4.09 kcal Atomic # 7 Polarization: -131.56 SS G_CDS: -5.63 Total: -137.19 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.04 Total: -21.47 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -75.00 1.83 -73.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992159470.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.727 kcal (2) G-P(sol) polarization free energy of solvation -75.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds