Wall clock time and date at job start Wed Apr 1 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48504 * 109.47204 * 239.99951 * 3 2 1 5 5 H 1.48498 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46913 * 120.00492 * 3 2 1 7 7 C 1.38820 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99578 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.49317 * 126.62839 * 0.22337 * 9 7 2 11 11 C 1.54862 * 105.18955 * 155.67064 * 10 9 7 12 12 C 1.54910 * 101.76864 * 36.84952 * 11 10 9 13 13 N 1.46500 * 112.78295 * 86.44732 * 12 11 10 14 14 C 1.34770 * 120.00626 * 64.06274 * 13 12 11 15 15 O 1.21287 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00656 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.54508 * 34.41454 * 16 14 13 18 18 C 1.52996 * 117.49942 * 248.74973 * 16 14 13 19 19 C 1.52993 * 117.50168 * 180.08772 * 16 14 13 20 20 H 1.09000 * 117.50001 * 359.97438 * 19 16 14 21 21 C 1.50700 * 117.49979 * 215.00200 * 19 16 14 22 22 C 1.38671 * 120.41858 * 119.99401 * 21 19 16 23 23 C 1.38636 * 118.42157 * 180.02562 * 22 21 19 24 24 C 1.38231 * 119.15762 * 0.02562 * 23 22 21 25 25 N 1.31852 * 120.76600 * 0.02562 * 24 23 22 26 26 C 1.31888 * 121.72298 * 359.69965 * 25 24 23 27 27 C 1.53584 * 109.09271 * 211.88117 * 12 11 10 28 28 C 1.54221 * 106.67646 * 113.07329 * 27 12 11 29 29 C 1.54757 * 104.15531 * 335.05974 * 28 27 12 30 30 C 1.46977 * 125.57755 * 180.02562 * 9 7 2 31 31 H 1.09002 * 111.81674 * 58.09503 * 30 9 7 32 32 H 0.96997 * 120.00235 * 0.02562 * 1 2 3 33 33 H 1.08995 * 110.38239 * 36.61393 * 10 9 7 34 34 H 1.09003 * 110.08796 * 274.57393 * 10 9 7 35 35 H 1.09004 * 110.97265 * 278.72494 * 11 10 9 36 36 H 1.09004 * 110.97003 * 154.96456 * 11 10 9 37 37 H 0.97006 * 119.99503 * 244.05975 * 13 12 11 38 38 H 1.09001 * 117.50017 * 359.97438 * 18 16 14 39 39 H 1.09001 * 117.50041 * 145.01608 * 18 16 14 40 40 H 1.07995 * 120.79005 * 359.97438 * 22 21 19 41 41 H 1.07994 * 120.42344 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.61399 * 180.02562 * 24 23 22 43 43 H 1.08008 * 119.61608 * 180.31660 * 26 25 24 44 44 H 1.09005 * 110.01973 * 232.38054 * 27 12 11 45 45 H 1.09004 * 110.01672 * 353.77390 * 27 12 11 46 46 H 1.09003 * 110.49540 * 216.38995 * 28 27 12 47 47 H 1.08997 * 110.49297 * 93.72691 * 28 27 12 48 48 H 1.08996 * 110.67394 * 279.37903 * 29 28 27 49 49 H 1.08999 * 110.66692 * 156.24305 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1577 -2.5604 -0.0070 11 6 -0.4013 -3.9607 -0.6218 12 6 0.7864 -4.7704 -0.0442 13 7 0.4981 -5.3371 1.2756 14 6 -0.4730 -6.2612 1.4149 15 8 -1.1080 -6.6240 0.4473 16 6 -0.7699 -6.8437 2.7726 17 1 -0.6506 -6.1605 3.6135 18 6 -0.4184 -8.3149 3.0024 19 6 -1.8825 -7.8898 2.8646 20 1 -2.4000 -8.1565 1.9431 21 6 -2.7296 -7.8969 4.1109 22 6 -4.0994 -7.6969 4.0299 23 6 -4.8389 -7.7110 5.2025 24 6 -4.1906 -7.9221 6.4050 25 7 -2.8858 -8.1078 6.4443 26 6 -2.1518 -8.1060 5.3485 27 6 1.2032 -5.8446 -1.0596 28 6 2.6107 -5.4597 -1.5586 29 6 2.6842 -3.9293 -1.3402 30 6 1.9332 -3.7264 -0.0017 31 1 2.5870 -3.8745 0.8578 32 1 -0.4850 0.8400 -0.0004 33 1 -0.6271 -1.7904 -0.6191 34 1 -0.5428 -2.5212 1.0120 35 1 -0.3547 -3.9224 -1.7102 36 1 -1.3534 -4.3731 -0.2879 37 1 1.0063 -5.0472 2.0494 38 1 0.0272 -8.8616 2.1713 39 1 -0.0683 -8.5998 3.9945 40 1 -4.5787 -7.5331 3.0761 41 1 -5.9078 -7.5591 5.1769 42 1 -4.7595 -7.9350 7.3229 43 1 -1.0861 -8.2667 5.4197 44 1 1.2324 -6.8221 -0.5780 45 1 0.5027 -5.8605 -1.8947 46 1 2.7197 -5.6999 -2.6162 47 1 3.3759 -5.9662 -0.9704 48 1 2.1796 -3.4006 -2.1488 49 1 3.7204 -3.6025 -1.2532 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992252727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:12 Heat of formation + Delta-G solvation = 53.146264 kcal Electronic energy + Delta-G solvation = -29803.378183 eV Core-core repulsion = 25924.603528 eV Total energy + Delta-G solvation = -3878.774655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.78762 -40.10310 -38.56590 -36.52826 -34.15261 -33.40922 -32.66739 -31.47320 -31.08194 -29.79398 -26.71633 -26.40107 -24.78821 -24.23942 -23.82207 -23.39757 -21.33593 -20.74196 -20.00196 -19.33930 -18.79879 -17.70835 -17.18431 -17.01334 -16.29259 -15.91910 -15.33246 -14.98475 -14.78146 -14.69158 -14.33903 -14.11566 -13.91531 -13.51730 -13.29326 -13.28677 -12.89328 -12.61813 -12.34469 -12.16790 -12.00727 -11.85218 -11.67847 -11.29272 -11.20164 -10.98230 -10.83992 -10.72222 -10.66689 -10.53747 -10.17949 -10.07739 -9.98160 -9.96289 -9.79591 -9.69173 -9.59037 -9.44055 -9.03350 -8.68613 -8.56559 -6.86428 -5.67637 -3.08116 0.78625 1.01814 2.62534 3.25525 3.38947 3.43470 3.44742 3.47321 3.83198 4.10906 4.37425 4.45910 4.48604 4.60291 4.66035 4.70862 4.79558 4.88368 5.01836 5.11450 5.15459 5.23786 5.30812 5.41649 5.51204 5.53426 5.60058 5.71657 5.76003 5.81558 5.84441 5.90845 5.98105 6.07146 6.07908 6.13321 6.25282 6.34409 6.39478 6.41653 6.51689 6.57934 6.74867 6.77062 6.97458 7.11444 7.49129 7.60751 7.70193 7.78996 7.84761 8.29444 8.47813 9.16592 9.79680 10.46517 11.38088 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.002760 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.036817 B =10140.705142 C =11472.837023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.153 3.847 11 C -0.140 4.140 12 C 0.162 3.838 13 N -0.699 5.699 14 C 0.543 3.457 15 O -0.539 6.539 16 C -0.173 4.173 17 H 0.124 0.876 18 C -0.144 4.144 19 C -0.083 4.083 20 H 0.130 0.870 21 C -0.101 4.101 22 C -0.065 4.065 23 C -0.169 4.169 24 C 0.090 3.910 25 N -0.483 5.483 26 C 0.097 3.903 27 C -0.109 4.109 28 C -0.125 4.125 29 C -0.130 4.130 30 C 0.160 3.840 31 H 0.045 0.955 32 H 0.252 0.748 33 H 0.102 0.898 34 H 0.012 0.988 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.400 0.600 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -18.049 7.181 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.321 5.321 10 C 0.029 3.971 11 C -0.179 4.179 12 C 0.076 3.924 13 N -0.348 5.348 14 C 0.329 3.671 15 O -0.416 6.416 16 C -0.195 4.195 17 H 0.142 0.858 18 C -0.181 4.181 19 C -0.102 4.102 20 H 0.148 0.852 21 C -0.103 4.103 22 C -0.091 4.091 23 C -0.189 4.189 24 C -0.067 4.067 25 N -0.191 5.191 26 C -0.060 4.060 27 C -0.148 4.148 28 C -0.163 4.163 29 C -0.170 4.170 30 C 0.052 3.948 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.181 -18.146 7.311 20.005 hybrid contribution 0.244 1.311 -0.316 1.371 sum -3.937 -16.835 6.995 18.650 Atomic orbital electron populations 1.69801 1.04890 1.24930 1.57280 1.24774 0.95664 0.97617 1.02491 0.86190 0.78415 0.83243 0.77853 1.21189 1.21647 1.21282 1.18956 0.90292 0.82193 1.43316 0.90511 1.44922 1.01529 0.99029 1.86625 1.22190 0.84299 0.92574 0.97991 1.23276 0.96660 0.97973 1.00003 1.21623 0.96835 0.92333 0.81646 1.45823 1.36752 1.41261 1.10934 1.19408 0.79667 0.79163 0.88895 1.90679 1.49697 1.60996 1.40231 1.22413 1.05332 0.93719 0.97994 0.85781 1.23132 0.96832 0.94188 1.03946 1.20959 0.89820 1.02220 0.97188 0.85218 1.20159 0.94410 1.00817 0.94897 1.21504 0.93195 0.95122 0.99318 1.22171 1.01563 1.01668 0.93475 1.22785 0.90624 0.95438 0.97835 1.67711 1.07331 1.12409 1.31626 1.22698 1.00265 0.95763 0.87248 1.22255 0.96690 0.97561 0.98281 1.22369 0.96422 0.97372 1.00165 1.22965 1.00426 0.93836 0.99761 1.21786 0.91649 0.86048 0.95339 0.93739 0.93709 0.88016 0.96976 0.91326 0.91536 0.76522 0.87458 0.87463 0.84495 0.84614 0.82783 0.82745 0.92354 0.91228 0.92272 0.92373 0.90779 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.20 55.49 0.57 -25.99 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -5.87 10.02 -15.06 -0.15 -6.02 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.51 3.10 -159.52 -0.49 -15.01 16 10 C 0.15 3.70 5.99 -1.50 -0.01 3.69 16 11 C -0.14 -2.82 5.77 -24.74 -0.14 -2.96 16 12 C 0.16 2.83 0.74 -129.38 -0.10 2.74 16 13 N -0.70 -10.64 5.24 -45.36 -0.24 -10.87 16 14 C 0.54 7.97 6.78 -10.99 -0.07 7.89 16 15 O -0.54 -9.44 14.14 5.55 0.08 -9.36 16 16 C -0.17 -1.90 5.83 -91.78 -0.53 -2.44 16 17 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 18 C -0.14 -1.23 9.58 -26.70 -0.26 -1.49 16 19 C -0.08 -0.84 5.58 -91.74 -0.51 -1.35 16 20 H 0.13 1.45 7.67 -51.93 -0.40 1.05 16 21 C -0.10 -1.00 5.62 -104.48 -0.59 -1.59 16 22 C -0.07 -0.61 9.89 -39.27 -0.39 -1.00 16 23 C -0.17 -1.39 10.11 -39.44 -0.40 -1.79 16 24 C 0.09 0.81 11.18 -17.55 -0.20 0.62 16 25 N -0.48 -5.30 10.36 -13.25 -0.14 -5.44 16 26 C 0.10 0.97 10.47 -17.55 -0.18 0.79 16 27 C -0.11 -1.73 5.22 -25.79 -0.13 -1.87 16 28 C -0.13 -1.84 6.84 -25.17 -0.17 -2.01 16 29 C -0.13 -2.32 6.21 -24.85 -0.15 -2.47 16 30 C 0.16 3.14 3.60 -65.58 -0.24 2.90 16 31 H 0.05 0.86 7.98 -51.93 -0.41 0.45 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.10 2.79 5.99 -51.93 -0.31 2.47 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 1.38 7.62 -51.93 -0.40 0.99 16 36 H 0.07 1.36 6.84 -51.93 -0.36 1.00 16 37 H 0.40 5.47 8.50 -40.82 -0.35 5.12 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.11 0.69 6.20 -51.93 -0.32 0.37 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.16 1.23 6.04 -52.48 -0.32 0.92 16 44 H 0.06 0.90 7.40 -51.93 -0.38 0.52 16 45 H 0.07 1.15 7.37 -51.93 -0.38 0.77 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 1.48 8.10 -51.93 -0.42 1.05 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -31.77 387.72 -11.13 -42.90 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.40 Total: 7.91 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -4.32 Total: -6.72 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.30 Total: -57.31 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.77 -11.13 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992252727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.046 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds