Wall clock time and date at job start Wed Apr 1 2020 00:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99964 * 2 1 4 4 H 1.48504 * 109.47204 * 239.99951 * 3 2 1 5 5 H 1.48498 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46913 * 120.00492 * 3 2 1 7 7 C 1.38820 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99578 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99970 * 0.02562 * 7 2 1 10 10 C 1.49317 * 126.62839 * 0.22337 * 9 7 2 11 11 C 1.54862 * 105.18955 * 155.67064 * 10 9 7 12 12 C 1.54910 * 101.76864 * 36.84952 * 11 10 9 13 13 N 1.46500 * 112.78295 * 86.44732 * 12 11 10 14 14 C 1.34770 * 120.00626 * 64.06274 * 13 12 11 15 15 O 1.21287 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.00656 * 180.02562 * 14 13 12 17 17 H 1.09002 * 115.54508 * 34.41454 * 16 14 13 18 18 C 1.52996 * 117.49942 * 248.74973 * 16 14 13 19 19 C 1.52993 * 117.50168 * 180.08772 * 16 14 13 20 20 H 1.09000 * 117.50001 * 359.97438 * 19 16 14 21 21 C 1.50700 * 117.49979 * 215.00200 * 19 16 14 22 22 C 1.38671 * 120.41858 * 119.99401 * 21 19 16 23 23 C 1.38636 * 118.42157 * 180.02562 * 22 21 19 24 24 C 1.38231 * 119.15762 * 0.02562 * 23 22 21 25 25 N 1.31852 * 120.76600 * 0.02562 * 24 23 22 26 26 C 1.31888 * 121.72298 * 359.69965 * 25 24 23 27 27 C 1.53584 * 109.09271 * 211.88117 * 12 11 10 28 28 C 1.54221 * 106.67646 * 113.07329 * 27 12 11 29 29 C 1.54757 * 104.15531 * 335.05974 * 28 27 12 30 30 C 1.46977 * 125.57755 * 180.02562 * 9 7 2 31 31 H 1.09002 * 111.81674 * 58.09503 * 30 9 7 32 32 H 0.96997 * 120.00235 * 0.02562 * 1 2 3 33 33 H 1.08995 * 110.38239 * 36.61393 * 10 9 7 34 34 H 1.09003 * 110.08796 * 274.57393 * 10 9 7 35 35 H 1.09004 * 110.97265 * 278.72494 * 11 10 9 36 36 H 1.09004 * 110.97003 * 154.96456 * 11 10 9 37 37 H 0.97006 * 119.99503 * 244.05975 * 13 12 11 38 38 H 1.09001 * 117.50017 * 359.97438 * 18 16 14 39 39 H 1.09001 * 117.50041 * 145.01608 * 18 16 14 40 40 H 1.07995 * 120.79005 * 359.97438 * 22 21 19 41 41 H 1.07994 * 120.42344 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.61399 * 180.02562 * 24 23 22 43 43 H 1.08008 * 119.61608 * 180.31660 * 26 25 24 44 44 H 1.09005 * 110.01973 * 232.38054 * 27 12 11 45 45 H 1.09004 * 110.01672 * 353.77390 * 27 12 11 46 46 H 1.09003 * 110.49540 * 216.38995 * 28 27 12 47 47 H 1.08997 * 110.49297 * 93.72691 * 28 27 12 48 48 H 1.08996 * 110.67394 * 279.37903 * 29 28 27 49 49 H 1.08999 * 110.66692 * 156.24305 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1577 -2.5604 -0.0070 11 6 -0.4013 -3.9607 -0.6218 12 6 0.7864 -4.7704 -0.0442 13 7 0.4981 -5.3371 1.2756 14 6 -0.4730 -6.2612 1.4149 15 8 -1.1080 -6.6240 0.4473 16 6 -0.7699 -6.8437 2.7726 17 1 -0.6506 -6.1605 3.6135 18 6 -0.4184 -8.3149 3.0024 19 6 -1.8825 -7.8898 2.8646 20 1 -2.4000 -8.1565 1.9431 21 6 -2.7296 -7.8969 4.1109 22 6 -4.0994 -7.6969 4.0299 23 6 -4.8389 -7.7110 5.2025 24 6 -4.1906 -7.9221 6.4050 25 7 -2.8858 -8.1078 6.4443 26 6 -2.1518 -8.1060 5.3485 27 6 1.2032 -5.8446 -1.0596 28 6 2.6107 -5.4597 -1.5586 29 6 2.6842 -3.9293 -1.3402 30 6 1.9332 -3.7264 -0.0017 31 1 2.5870 -3.8745 0.8578 32 1 -0.4850 0.8400 -0.0004 33 1 -0.6271 -1.7904 -0.6191 34 1 -0.5428 -2.5212 1.0120 35 1 -0.3547 -3.9224 -1.7102 36 1 -1.3534 -4.3731 -0.2879 37 1 1.0063 -5.0472 2.0494 38 1 0.0272 -8.8616 2.1713 39 1 -0.0683 -8.5998 3.9945 40 1 -4.5787 -7.5331 3.0761 41 1 -5.9078 -7.5591 5.1769 42 1 -4.7595 -7.9350 7.3229 43 1 -1.0861 -8.2667 5.4197 44 1 1.2324 -6.8221 -0.5780 45 1 0.5027 -5.8605 -1.8947 46 1 2.7197 -5.6999 -2.6162 47 1 3.3759 -5.9662 -0.9704 48 1 2.1796 -3.4006 -2.1488 49 1 3.7204 -3.6025 -1.2532 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992252727.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:11 Heat of formation + Delta-G solvation = 34.794224 kcal Electronic energy + Delta-G solvation = -29804.173988 eV Core-core repulsion = 25924.603528 eV Total energy + Delta-G solvation = -3879.570459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.77982 -41.17086 -39.80398 -37.51175 -35.92166 -34.71185 -33.39434 -33.28674 -31.90594 -31.41280 -28.40453 -27.82890 -25.75794 -25.58627 -25.08781 -24.18736 -22.55216 -21.83841 -21.49982 -20.61987 -20.19772 -18.89840 -18.54120 -18.09254 -17.26238 -17.06305 -16.85081 -16.25787 -15.98940 -15.84792 -15.62025 -15.17653 -14.93766 -14.83077 -14.74923 -14.50637 -13.97252 -13.93946 -13.55770 -13.54276 -13.19835 -13.01815 -12.93088 -12.81696 -12.66856 -12.64302 -12.30264 -12.08406 -12.06632 -11.89443 -11.69783 -11.61507 -11.48179 -11.43839 -11.24810 -10.75136 -10.73303 -10.64874 -10.40041 -9.93955 -9.77050 -8.86296 -7.76227 -5.18003 0.09703 0.32069 1.47405 1.49975 1.54427 1.56077 2.13514 2.51003 2.67753 3.05468 3.32881 3.35874 3.43141 3.62525 3.66218 3.70409 3.82812 3.91592 3.94924 3.97228 4.02446 4.10086 4.19377 4.35651 4.37367 4.41993 4.47093 4.57770 4.59289 4.65134 4.73479 4.81497 4.90159 4.90291 4.94096 4.98478 5.07110 5.08725 5.17101 5.22318 5.22608 5.32499 5.36652 5.45879 5.50831 5.63186 5.69929 5.76177 5.81388 6.26053 6.62079 7.01216 7.08125 7.29869 7.77685 8.45703 9.28374 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013020 B = 0.002760 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.036817 B =10140.705142 C =11472.837023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.223 4.223 8 H 0.086 0.914 9 N -0.613 5.613 10 C 0.164 3.836 11 C -0.127 4.127 12 C 0.172 3.828 13 N -0.699 5.699 14 C 0.542 3.458 15 O -0.570 6.570 16 C -0.183 4.183 17 H 0.134 0.866 18 C -0.118 4.118 19 C -0.083 4.083 20 H 0.116 0.884 21 C -0.110 4.110 22 C -0.081 4.081 23 C -0.167 4.167 24 C 0.081 3.919 25 N -0.508 5.508 26 C 0.089 3.911 27 C -0.102 4.102 28 C -0.110 4.110 29 C -0.126 4.126 30 C 0.152 3.848 31 H 0.056 0.944 32 H 0.244 0.756 33 H 0.064 0.936 34 H -0.014 1.014 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.409 0.591 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.172 0.828 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.047 0.953 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.621 -20.003 8.069 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.351 4.351 8 H 0.104 0.896 9 N -0.338 5.338 10 C 0.039 3.961 11 C -0.167 4.167 12 C 0.085 3.915 13 N -0.348 5.348 14 C 0.330 3.670 15 O -0.449 6.449 16 C -0.204 4.204 17 H 0.151 0.849 18 C -0.155 4.155 19 C -0.102 4.102 20 H 0.134 0.866 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.186 4.186 24 C -0.075 4.075 25 N -0.217 5.217 26 C -0.067 4.067 27 C -0.141 4.141 28 C -0.148 4.148 29 C -0.166 4.166 30 C 0.045 3.955 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.004 0.996 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.245 0.755 38 H 0.128 0.872 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.189 0.811 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.066 0.934 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.693 -20.139 8.212 21.915 hybrid contribution -0.271 1.895 -0.573 1.998 sum -2.965 -18.245 7.639 20.000 Atomic orbital electron populations 1.70057 1.06320 1.24883 1.59011 1.25586 0.96458 1.00871 1.03307 0.85175 0.77050 0.79077 0.78184 1.20349 1.22574 1.20381 1.19344 0.90892 0.83223 1.41685 0.89645 1.45105 1.01668 1.00432 1.86564 1.21857 0.84525 0.93796 0.95917 1.23076 0.97845 0.96117 0.99616 1.21421 0.94409 0.92389 0.83270 1.45797 1.37347 1.41359 1.10326 1.19983 0.78619 0.78395 0.90013 1.90664 1.50559 1.61967 1.41725 1.22320 1.07115 0.95090 0.95839 0.84860 1.23278 0.95191 0.91539 1.05468 1.20877 0.90555 1.01952 0.96852 0.86616 1.20184 0.94690 1.01501 0.94800 1.21773 0.93453 0.95260 1.00182 1.22458 1.02837 1.00585 0.92770 1.23259 0.90389 0.94757 0.99144 1.67739 1.08360 1.13404 1.32203 1.22957 1.01112 0.95648 0.86984 1.22185 0.97321 0.97215 0.97392 1.22308 0.96064 0.94599 1.01824 1.22823 1.00004 0.96260 0.97486 1.22049 0.92574 0.84210 0.96703 0.92622 0.94641 0.91746 0.99614 0.91615 0.92055 0.75535 0.87181 0.84777 0.83939 0.82086 0.80466 0.81106 0.91282 0.92067 0.90423 0.89940 0.93398 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 10.20 21.65 0.22 -56.96 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.46 16 3 Si 0.98 45.37 29.55 68.60 2.03 47.40 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.22 -12.03 10.02 84.04 0.84 -11.19 16 8 H 0.09 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.61 -30.35 3.10 -658.60 -2.04 -32.39 16 10 C 0.16 8.26 5.99 86.47 0.52 8.78 16 11 C -0.13 -5.26 5.77 31.88 0.18 -5.07 16 12 C 0.17 5.91 0.74 5.18 0.00 5.92 16 13 N -0.70 -20.59 5.24 -415.81 -2.18 -22.77 16 14 C 0.54 15.44 6.78 87.66 0.59 16.03 16 15 O -0.57 -19.74 14.14 -3.05 -0.04 -19.79 16 16 C -0.18 -3.74 5.83 -11.54 -0.07 -3.81 16 17 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 18 C -0.12 -1.72 9.58 30.62 0.29 -1.43 16 19 C -0.08 -1.58 5.58 -11.52 -0.06 -1.65 16 20 H 0.12 2.55 7.67 -2.39 -0.02 2.53 16 21 C -0.11 -2.06 5.62 -19.77 -0.11 -2.17 16 22 C -0.08 -1.44 9.89 22.47 0.22 -1.21 16 23 C -0.17 -2.49 10.11 22.36 0.23 -2.27 16 24 C 0.08 1.33 11.18 84.69 0.95 2.28 16 25 N -0.51 -10.45 10.36 -195.83 -2.03 -12.48 16 26 C 0.09 1.64 10.47 84.67 0.89 2.53 16 27 C -0.10 -3.04 5.22 31.20 0.16 -2.88 16 28 C -0.11 -2.89 6.84 31.61 0.22 -2.68 16 29 C -0.13 -4.30 6.21 31.81 0.20 -4.10 16 30 C 0.15 5.82 3.60 46.25 0.17 5.98 16 31 H 0.06 2.05 7.98 -2.39 -0.02 2.03 16 32 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.06 3.75 5.99 -2.39 -0.01 3.73 16 34 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.07 2.73 7.62 -2.38 -0.02 2.71 16 36 H 0.06 2.58 6.84 -2.38 -0.02 2.57 16 37 H 0.41 10.65 8.50 -92.70 -0.79 9.86 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.13 1.25 6.20 -2.39 -0.01 1.24 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.17 2.32 6.04 -2.91 -0.02 2.30 16 44 H 0.07 1.94 7.40 -2.38 -0.02 1.92 16 45 H 0.06 1.94 7.37 -2.38 -0.02 1.92 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 49 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -70.94 387.72 1.82 -69.13 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.18 Total: 28.26 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: 5.68 Total: -0.41 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -6.03 Total: -124.60 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.04 Total: -19.79 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.94 1.82 -69.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992252727.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.923 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds