Wall clock time and date at job start Wed Apr 1 2020 00:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48495 * 109.47320 * 269.99656 * 3 2 1 5 5 H 1.48494 * 109.47646 * 30.00216 * 3 2 1 6 6 H 1.48508 * 109.46798 * 149.99878 * 3 2 1 7 7 C 1.38807 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00362 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.47372 * 125.58268 * 359.94772 * 9 7 2 11 11 C 1.56225 * 104.46637 * 205.37897 * 10 9 7 12 12 C 1.54913 * 101.15202 * 321.88438 * 11 10 9 13 13 N 1.46499 * 112.33726 * 274.87017 * 12 11 10 14 14 C 1.34786 * 119.99631 * 295.64087 * 13 12 11 15 15 O 1.21282 * 119.99570 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99920 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.88240 * 62.06088 * 16 14 13 18 18 C 1.54618 * 110.84930 * 185.70417 * 16 14 13 19 19 C 1.51214 * 105.13672 * 91.86712 * 18 16 14 20 20 C 1.38739 * 130.69777 * 197.16238 * 19 18 16 21 21 C 1.38576 * 118.56144 * 179.97438 * 20 19 18 22 22 C 1.38227 * 118.99044 * 359.97438 * 21 20 19 23 23 N 1.31687 * 120.79960 * 0.02562 * 22 21 20 24 24 C 1.32301 * 122.03456 * 0.02562 * 23 22 21 25 25 C 1.51475 * 130.14531 * 179.97438 * 24 23 22 26 26 C 1.53591 * 109.57011 * 149.38641 * 12 11 10 27 27 C 1.54174 * 106.70033 * 247.55057 * 26 12 11 28 28 C 1.54756 * 104.36422 * 24.13288 * 27 26 12 29 29 C 1.46981 * 125.57750 * 179.97438 * 9 7 2 30 30 H 1.09000 * 111.81104 * 300.90012 * 29 9 7 31 31 H 0.97004 * 119.99476 * 0.02562 * 1 2 3 32 32 H 1.09003 * 110.36714 * 323.57022 * 10 9 7 33 33 H 1.09003 * 110.36357 * 85.77980 * 10 9 7 34 34 H 1.08998 * 110.31500 * 204.37104 * 11 10 9 35 35 H 1.08999 * 112.19235 * 80.20450 * 11 10 9 36 36 H 0.96995 * 120.00474 * 115.64546 * 13 12 11 37 37 H 1.08997 * 110.29587 * 332.95497 * 18 16 14 38 38 H 1.09005 * 110.31439 * 210.79232 * 18 16 14 39 39 H 1.08007 * 120.71776 * 359.96894 * 20 19 18 40 40 H 1.08003 * 120.50661 * 180.02562 * 21 20 19 41 41 H 1.07999 * 119.59869 * 180.02562 * 22 21 20 42 42 H 1.09002 * 110.29761 * 281.74724 * 25 24 23 43 43 H 1.09002 * 110.29285 * 43.78347 * 25 24 23 44 44 H 1.09001 * 110.01760 * 6.01474 * 26 12 11 45 45 H 1.09000 * 110.01300 * 127.39954 * 26 12 11 46 46 H 1.08999 * 109.98178 * 265.59986 * 27 26 12 47 47 H 1.08994 * 110.91578 * 143.12928 * 27 26 12 48 48 H 1.09004 * 110.66969 * 204.23875 * 28 27 26 49 49 H 1.09000 * 110.67162 * 81.10030 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1412 -2.5313 0.0011 11 6 -0.3965 -3.9297 0.6492 12 6 0.7720 -4.7539 0.0533 13 7 0.4507 -5.3014 -1.2669 14 6 -0.5366 -6.2096 -1.3977 15 8 -1.1585 -6.5739 -0.4223 16 6 -0.8676 -6.7725 -2.7559 17 1 -0.0165 -7.3129 -3.1705 18 6 -2.1168 -7.6808 -2.6857 19 6 -3.2855 -6.7687 -2.9841 20 6 -4.6442 -6.9361 -2.7589 21 6 -5.5084 -5.9212 -3.1376 22 6 -4.9885 -4.7822 -3.7234 23 7 -3.6927 -4.6575 -3.9218 24 6 -2.8354 -5.6038 -3.5754 25 6 -1.3280 -5.6549 -3.7157 26 6 1.1919 -5.8454 1.0490 27 6 2.6052 -5.4756 1.5418 28 6 2.6981 -3.9456 1.3286 29 6 1.9332 -3.7263 0.0005 30 1 2.5738 -3.8802 -0.8678 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5985 -1.7500 0.6083 33 1 -0.5264 -2.4931 -1.0179 34 1 -1.3586 -4.3267 0.3258 35 1 -0.3356 -3.8965 1.7370 36 1 0.9484 -5.0104 -2.0470 37 1 -2.2167 -8.1099 -1.6887 38 1 -2.0528 -8.4709 -3.4338 39 1 -5.0202 -7.8379 -2.2986 40 1 -6.5720 -6.0182 -2.9767 41 1 -5.6531 -3.9850 -4.0219 42 1 -1.0518 -5.8986 -4.7416 43 1 -0.8885 -4.7015 -3.4228 44 1 0.5071 -5.8604 1.8969 45 1 1.1975 -6.8176 0.5562 46 1 3.3555 -5.9907 0.9419 47 1 2.7263 -5.7220 2.5966 48 1 3.7377 -3.6333 1.2298 49 1 2.2113 -3.4130 2.1456 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992465524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:40 Heat of formation + Delta-G solvation = 27.295837 kcal Electronic energy + Delta-G solvation = -30950.647373 eV Core-core repulsion = 27070.751760 eV Total energy + Delta-G solvation = -3879.895614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.06104 -39.93948 -38.25903 -35.80886 -34.23482 -33.46586 -32.63019 -31.40309 -30.07149 -29.23069 -27.88284 -26.72293 -26.06141 -24.13902 -23.81741 -22.12682 -21.89155 -20.68168 -19.98887 -19.20738 -18.77548 -17.24885 -16.99857 -16.69894 -16.16461 -15.75748 -15.35966 -14.92420 -14.83990 -14.47723 -13.98599 -13.91597 -13.54341 -13.41529 -13.20013 -12.92953 -12.89668 -12.74030 -12.25035 -12.07201 -11.97655 -11.80934 -11.63718 -11.60664 -11.36709 -11.11289 -10.97541 -10.82849 -10.68196 -10.52981 -10.13236 -10.05508 -9.93633 -9.76133 -9.70284 -9.59669 -9.35859 -9.24861 -8.74636 -8.64664 -8.51222 -6.84189 -5.62410 -3.06182 1.06924 1.27277 2.84116 3.37283 3.40703 3.45550 3.47629 3.72561 3.89746 4.32744 4.48705 4.53905 4.74023 4.79743 4.86270 4.96617 5.09832 5.16725 5.20461 5.27572 5.34236 5.42081 5.53598 5.55946 5.66995 5.69151 5.71801 5.80090 5.85478 5.88246 5.90467 6.01214 6.08723 6.09781 6.16308 6.19016 6.28883 6.36154 6.41185 6.55409 6.60533 6.67125 6.78927 6.79583 7.00320 7.14664 7.57325 7.66003 7.82716 7.90506 8.00590 8.38532 8.51285 9.23068 9.84242 10.48398 11.39754 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.003835 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.004399 B = 7299.780479 C = 8978.332146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.077 0.923 9 N -0.595 5.595 10 C 0.154 3.846 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.702 5.702 14 C 0.521 3.479 15 O -0.534 6.534 16 C -0.112 4.112 17 H 0.116 0.884 18 C -0.064 4.064 19 C -0.140 4.140 20 C -0.064 4.064 21 C -0.176 4.176 22 C 0.101 3.899 23 N -0.475 5.475 24 C 0.121 3.879 25 C -0.065 4.065 26 C -0.109 4.109 27 C -0.124 4.124 28 C -0.129 4.129 29 C 0.162 3.838 30 H 0.045 0.955 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.012 0.988 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -17.094 -6.442 18.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.350 4.350 8 H 0.095 0.905 9 N -0.319 5.319 10 C 0.030 3.970 11 C -0.180 4.180 12 C 0.075 3.925 13 N -0.352 5.352 14 C 0.306 3.694 15 O -0.410 6.410 16 C -0.134 4.134 17 H 0.134 0.866 18 C -0.102 4.102 19 C -0.142 4.142 20 C -0.090 4.090 21 C -0.196 4.196 22 C -0.056 4.056 23 N -0.183 5.183 24 C -0.017 4.017 25 C -0.103 4.103 26 C -0.148 4.148 27 C -0.162 4.162 28 C -0.170 4.170 29 C 0.054 3.946 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.123 0.877 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.174 0.826 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.453 -16.314 -6.128 17.987 hybrid contribution 0.207 0.341 -0.078 0.407 sum -4.246 -15.973 -6.206 17.654 Atomic orbital electron populations 1.69813 1.04876 1.24715 1.57345 1.24779 0.95643 0.97653 1.02404 0.86112 0.78532 0.83556 0.77520 1.21695 1.21724 1.20723 1.19026 0.90419 0.82322 1.43219 0.90536 1.44505 1.01829 0.99156 1.86437 1.22204 0.84250 0.92808 0.97779 1.23525 0.96605 0.98249 0.99657 1.21650 0.96703 0.92411 0.81741 1.45879 1.36199 1.42649 1.10482 1.20160 0.79632 0.79280 0.90303 1.90668 1.50507 1.59949 1.39910 1.22093 0.99878 0.97349 0.94067 0.86592 1.20898 0.89209 0.96122 1.03972 1.21394 0.94974 0.97922 0.99918 1.21018 0.91861 0.99096 0.97018 1.22051 1.00906 0.95315 1.01294 1.22626 0.90829 0.96662 0.95501 1.66843 1.03426 1.30243 1.17789 1.21737 0.96028 0.89643 0.94279 1.20982 0.89389 0.99776 1.00140 1.22227 0.96621 0.97537 0.98418 1.22346 0.96448 0.97291 1.00146 1.22924 1.00328 0.93887 0.99818 1.21785 0.91585 0.85895 0.95327 0.93782 0.93750 0.87661 0.97005 0.91941 0.91388 0.76646 0.88358 0.89395 0.85127 0.84688 0.82644 0.88275 0.88708 0.91419 0.92207 0.92468 0.92243 0.92339 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.07 55.49 0.56 -26.33 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.22 -5.98 10.03 -15.06 -0.15 -6.13 16 8 H 0.08 2.00 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -14.65 3.06 -160.23 -0.49 -15.14 16 10 C 0.15 3.83 5.96 -1.84 -0.01 3.82 16 11 C -0.14 -2.95 5.85 -23.99 -0.14 -3.09 16 12 C 0.16 2.88 0.71 -129.37 -0.09 2.78 16 13 N -0.70 -10.79 4.95 -45.35 -0.22 -11.01 16 14 C 0.52 7.75 6.31 -10.98 -0.07 7.68 16 15 O -0.53 -9.62 13.39 5.56 0.07 -9.54 16 16 C -0.11 -1.22 3.48 -90.22 -0.31 -1.53 16 17 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.06 -0.68 6.13 -26.78 -0.16 -0.85 16 19 C -0.14 -1.78 6.16 -104.21 -0.64 -2.42 16 20 C -0.06 -0.73 10.17 -39.27 -0.40 -1.13 16 21 C -0.18 -1.91 10.12 -39.46 -0.40 -2.31 16 22 C 0.10 1.28 11.18 -17.62 -0.20 1.09 16 23 N -0.47 -7.37 10.35 -9.19 -0.10 -7.46 16 24 C 0.12 1.73 7.32 -82.03 -0.60 1.13 16 25 C -0.06 -0.76 6.28 -26.80 -0.17 -0.93 16 26 C -0.11 -1.76 5.25 -25.81 -0.14 -1.90 16 27 C -0.12 -1.84 6.83 -25.19 -0.17 -2.01 16 28 C -0.13 -2.33 6.26 -24.85 -0.16 -2.48 16 29 C 0.16 3.21 3.60 -65.58 -0.24 2.97 16 30 H 0.04 0.85 7.99 -51.93 -0.42 0.44 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.11 2.98 5.83 -51.93 -0.30 2.68 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 1.36 6.82 -51.93 -0.35 1.00 16 35 H 0.07 1.43 7.65 -51.93 -0.40 1.03 16 36 H 0.40 5.43 8.26 -40.82 -0.34 5.09 16 37 H 0.10 1.17 6.97 -51.93 -0.36 0.80 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 40 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 41 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.09 1.28 7.45 -51.93 -0.39 0.90 16 44 H 0.07 1.15 7.41 -51.93 -0.38 0.76 16 45 H 0.06 0.93 7.40 -51.93 -0.38 0.55 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 1.48 8.11 -51.93 -0.42 1.06 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -33.20 381.00 -11.12 -44.32 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.52 Total: 8.14 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.14 Total: -5.66 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.25 Total: -59.94 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.20 -11.12 -44.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992465524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.615 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds