Wall clock time and date at job start Wed Apr 1 2020 00:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00107 * 2 1 4 4 H 1.48506 * 109.47105 * 269.99991 * 3 2 1 5 5 H 1.48503 * 109.47291 * 29.99421 * 3 2 1 6 6 H 1.48503 * 109.47545 * 149.99908 * 3 2 1 7 7 C 1.38817 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99346 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00346 * 0.02562 * 7 2 1 10 10 C 1.47375 * 125.57471 * 359.97296 * 9 7 2 11 11 C 1.56426 * 104.93473 * 204.75468 * 10 9 7 12 12 C 1.54920 * 101.06370 * 322.96638 * 11 10 9 13 13 N 1.46499 * 112.33135 * 273.49862 * 12 11 10 14 14 C 1.34782 * 119.99766 * 297.64517 * 13 12 11 15 15 O 1.21276 * 120.00010 * 359.97438 * 14 13 12 16 16 C 1.50708 * 119.99815 * 180.02562 * 14 13 12 17 17 H 1.08996 * 110.88218 * 303.51367 * 16 14 13 18 18 C 1.54361 * 110.82209 * 179.97438 * 16 14 13 19 19 C 1.51226 * 105.12110 * 268.06364 * 18 16 14 20 20 C 1.38748 * 130.69362 * 162.87523 * 19 18 16 21 21 C 1.38579 * 118.55294 * 179.97438 * 20 19 18 22 22 C 1.38229 * 118.99297 * 0.04957 * 21 20 19 23 23 N 1.31691 * 120.80043 * 359.93996 * 22 21 20 24 24 C 1.32299 * 122.02852 * 0.02562 * 23 22 21 25 25 C 1.51475 * 130.13623 * 180.02562 * 24 23 22 26 26 C 1.53576 * 109.09488 * 148.38400 * 12 11 10 27 27 C 1.54227 * 106.67330 * 246.33717 * 26 12 11 28 28 C 1.54761 * 104.15490 * 24.94329 * 27 26 12 29 29 C 1.46978 * 125.58219 * 180.02562 * 9 7 2 30 30 H 1.08995 * 112.53474 * 301.37220 * 29 9 7 31 31 H 0.96998 * 120.00003 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.37163 * 323.55171 * 10 9 7 33 33 H 1.09008 * 110.36734 * 85.88278 * 10 9 7 34 34 H 1.08998 * 111.55014 * 204.98003 * 11 10 9 35 35 H 1.09000 * 111.05170 * 80.73296 * 11 10 9 36 36 H 0.97002 * 120.00100 * 117.64144 * 13 12 11 37 37 H 1.08999 * 110.31293 * 149.15261 * 18 16 14 38 38 H 1.09005 * 110.31073 * 26.97160 * 18 16 14 39 39 H 1.07995 * 120.72299 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.49967 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.59729 * 179.97438 * 22 21 20 42 42 H 1.09002 * 110.29947 * 316.13072 * 25 24 23 43 43 H 1.09001 * 110.29345 * 78.16428 * 25 24 23 44 44 H 1.08999 * 110.01540 * 5.63686 * 26 12 11 45 45 H 1.08997 * 110.02391 * 126.98867 * 26 12 11 46 46 H 1.08999 * 110.49574 * 143.60742 * 27 26 12 47 47 H 1.08995 * 110.49520 * 266.27576 * 27 26 12 48 48 H 1.09000 * 110.67207 * 80.62492 * 28 27 26 49 49 H 1.09001 * 110.66686 * 203.58825 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1412 -2.5313 0.0006 11 6 -0.4090 -3.9365 0.6334 12 6 0.7721 -4.7540 0.0531 13 7 0.4652 -5.3172 -1.2640 14 6 -0.5382 -6.2068 -1.3993 15 8 -1.1868 -6.5413 -0.4306 16 6 -0.8536 -6.7867 -2.7541 17 1 -1.0633 -5.9970 -3.4755 18 6 -2.0340 -7.7774 -2.6657 19 6 -1.3973 -9.1307 -2.4420 20 6 -1.9412 -10.3215 -1.9824 21 6 -1.1147 -11.4285 -1.8726 22 6 0.2171 -11.3075 -2.2225 23 7 0.6992 -10.1610 -2.6553 24 6 -0.0572 -9.0821 -2.7747 25 6 0.2987 -7.6875 -3.2469 26 6 1.1816 -5.8334 1.0658 27 6 2.5986 -5.4682 1.5531 28 6 2.6922 -3.9392 1.3331 29 6 1.9332 -3.7264 0.0016 30 1 2.5838 -3.8905 -0.8574 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5986 -1.7501 0.6076 33 1 -0.5259 -2.4951 -1.0187 34 1 -1.3648 -4.3468 0.3075 35 1 -0.3556 -3.8926 1.7212 36 1 0.9842 -5.0499 -2.0387 37 1 -2.6005 -7.7751 -3.5969 38 1 -2.6815 -7.5206 -1.8273 39 1 -2.9859 -10.3844 -1.7159 40 1 -1.5050 -12.3710 -1.5180 41 1 0.8701 -12.1638 -2.1404 42 1 1.2432 -7.3686 -2.8061 43 1 0.3619 -7.6614 -4.3347 44 1 0.4878 -5.8387 1.9065 45 1 1.1923 -6.8115 0.5850 46 1 2.7127 -5.7093 2.6099 47 1 3.3517 -5.9860 0.9591 48 1 2.2017 -3.4028 2.1454 49 1 3.7323 -3.6268 1.2404 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992465530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:44 Heat of formation + Delta-G solvation = 26.462722 kcal Electronic energy + Delta-G solvation = -30672.580267 eV Core-core repulsion = 26792.648527 eV Total energy + Delta-G solvation = -3879.931740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.15153 -39.97779 -38.28995 -35.87461 -34.25164 -33.45641 -32.75860 -31.41665 -30.13019 -29.29684 -27.98339 -26.72281 -26.09324 -24.17198 -23.84276 -22.18484 -22.01611 -20.72191 -19.99143 -19.23175 -18.78549 -17.28662 -17.03560 -16.79101 -16.27608 -15.76382 -15.41388 -14.98234 -14.86805 -14.49258 -14.15573 -13.88054 -13.57265 -13.44697 -13.27267 -13.01713 -12.96767 -12.73143 -12.32291 -12.19969 -11.98153 -11.83447 -11.73956 -11.53448 -11.43872 -11.15319 -10.98374 -10.84318 -10.65452 -10.52285 -10.15671 -10.06663 -9.95067 -9.87448 -9.72231 -9.62648 -9.47054 -9.31458 -8.85447 -8.66677 -8.51870 -6.86502 -5.65618 -3.08819 0.93976 1.14036 2.83340 3.35865 3.38746 3.44005 3.45680 3.59977 3.76770 4.25505 4.46052 4.46799 4.69894 4.70993 4.77600 4.95302 4.99103 5.09241 5.17808 5.27716 5.32406 5.34699 5.46316 5.51356 5.59940 5.63670 5.65163 5.73838 5.82711 5.85993 5.88147 5.97816 6.00257 6.09763 6.10910 6.15935 6.29086 6.37246 6.42285 6.53834 6.55408 6.59919 6.77673 6.79132 7.00170 7.14137 7.53436 7.63809 7.81666 7.83973 7.88321 8.35850 8.51017 9.20699 9.81524 10.45780 11.36818 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002862 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.253672 B = 9781.870649 C =10230.736461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.154 3.846 11 C -0.143 4.143 12 C 0.162 3.838 13 N -0.702 5.702 14 C 0.521 3.479 15 O -0.533 6.533 16 C -0.113 4.113 17 H 0.118 0.882 18 C -0.066 4.066 19 C -0.133 4.133 20 C -0.064 4.064 21 C -0.175 4.175 22 C 0.097 3.903 23 N -0.479 5.479 24 C 0.117 3.883 25 C -0.061 4.061 26 C -0.110 4.110 27 C -0.125 4.125 28 C -0.130 4.130 29 C 0.163 3.837 30 H 0.045 0.955 31 H 0.252 0.748 32 H 0.107 0.893 33 H 0.009 0.991 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -19.672 -5.834 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.030 3.970 11 C -0.182 4.182 12 C 0.076 3.924 13 N -0.352 5.352 14 C 0.307 3.693 15 O -0.410 6.410 16 C -0.135 4.135 17 H 0.136 0.864 18 C -0.104 4.104 19 C -0.135 4.135 20 C -0.090 4.090 21 C -0.194 4.194 22 C -0.060 4.060 23 N -0.187 5.187 24 C -0.021 4.021 25 C -0.099 4.099 26 C -0.149 4.149 27 C -0.163 4.163 28 C -0.170 4.170 29 C 0.055 3.945 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.173 0.827 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.886 -19.597 -5.355 20.402 hybrid contribution -0.150 0.759 -0.191 0.797 sum -2.035 -18.837 -5.546 19.742 Atomic orbital electron populations 1.69802 1.04862 1.24715 1.57498 1.24782 0.95681 0.97670 1.02462 0.86098 0.78550 0.83479 0.77506 1.21716 1.21717 1.20719 1.19036 0.90446 0.82287 1.43039 0.90513 1.44478 1.01816 0.99151 1.86373 1.22238 0.84238 0.92745 0.97804 1.23588 0.96641 0.98124 0.99888 1.21642 0.96812 0.92263 0.81726 1.45872 1.34652 1.43669 1.11004 1.20138 0.80067 0.78931 0.90210 1.90669 1.49934 1.60227 1.40120 1.22064 0.96408 0.98595 0.96432 0.86435 1.20882 0.97011 0.88840 1.03629 1.21422 0.96491 0.96143 0.99457 1.21060 1.00435 0.91445 0.96021 1.22052 0.95405 0.99530 1.02460 1.22590 0.93543 0.94697 0.95206 1.66825 1.39620 0.98860 1.13426 1.21766 0.90479 0.94345 0.95490 1.20942 0.98817 0.88174 1.01931 1.22260 0.96601 0.97637 0.98402 1.22362 0.96409 0.97333 1.00185 1.22933 1.00355 0.93892 0.99830 1.21742 0.91582 0.85840 0.95363 0.93738 0.93759 0.87523 0.97258 0.91404 0.91510 0.76660 0.89223 0.88273 0.85007 0.84685 0.82725 0.89108 0.88182 0.91335 0.92509 0.92309 0.92373 0.90805 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.07 55.49 0.56 -25.76 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.22 -5.86 10.02 -15.06 -0.15 -6.01 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.41 3.06 -160.17 -0.49 -14.90 16 10 C 0.15 3.71 5.95 -1.72 -0.01 3.70 16 11 C -0.14 -2.90 5.86 -23.88 -0.14 -3.04 16 12 C 0.16 2.88 0.73 -129.38 -0.09 2.79 16 13 N -0.70 -10.71 5.11 -45.35 -0.23 -10.95 16 14 C 0.52 7.72 6.25 -10.98 -0.07 7.65 16 15 O -0.53 -9.59 13.34 5.56 0.07 -9.51 16 16 C -0.11 -1.22 3.47 -90.36 -0.31 -1.53 16 17 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.07 -0.69 6.08 -26.91 -0.16 -0.85 16 19 C -0.13 -1.54 6.16 -104.20 -0.64 -2.18 16 20 C -0.06 -0.65 10.17 -39.27 -0.40 -1.05 16 21 C -0.17 -1.61 10.12 -39.46 -0.40 -2.01 16 22 C 0.10 1.01 11.18 -17.62 -0.20 0.81 16 23 N -0.48 -6.21 10.35 -9.19 -0.10 -6.30 16 24 C 0.12 1.45 7.32 -82.04 -0.60 0.85 16 25 C -0.06 -0.62 6.30 -26.80 -0.17 -0.79 16 26 C -0.11 -1.84 5.27 -25.79 -0.14 -1.98 16 27 C -0.12 -1.92 6.84 -25.16 -0.17 -2.10 16 28 C -0.13 -2.36 6.25 -24.90 -0.16 -2.52 16 29 C 0.16 3.22 3.63 -65.63 -0.24 2.98 16 30 H 0.05 0.86 7.99 -51.93 -0.41 0.45 16 31 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.11 2.92 5.82 -51.93 -0.30 2.62 16 33 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.07 1.39 6.65 -51.93 -0.35 1.04 16 35 H 0.07 1.37 7.63 -51.93 -0.40 0.98 16 36 H 0.40 5.35 8.50 -40.82 -0.35 5.00 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.19 7.03 -51.93 -0.37 0.82 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.09 0.97 7.80 -51.93 -0.41 0.56 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 45 H 0.06 0.96 7.49 -51.93 -0.39 0.57 16 46 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -32.33 381.55 -11.14 -43.47 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -7.54 Total: 7.21 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -4.14 Total: -5.66 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: -0.26 Total: -57.91 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.33 -11.14 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992465530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.934 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds