Wall clock time and date at job start Wed Apr 1 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86791 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47421 * 270.00539 * 3 2 1 5 5 H 1.48501 * 109.47182 * 30.00610 * 3 2 1 6 6 H 1.48504 * 109.47012 * 150.00227 * 3 2 1 7 7 C 1.38811 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00586 * 359.97438 * 7 2 1 10 10 C 1.49302 * 127.10160 * 359.97438 * 9 7 2 11 11 C 1.56224 * 106.50813 * 188.65611 * 10 9 7 12 12 C 1.52134 * 100.81553 * 23.44682 * 11 10 9 13 13 N 1.46505 * 111.09660 * 73.97760 * 12 11 10 14 14 C 1.34776 * 120.00108 * 61.01351 * 13 12 11 15 15 O 1.21516 * 119.99741 * 0.02562 * 14 13 12 16 16 C 1.48162 * 120.00242 * 180.02562 * 14 13 12 17 17 C 1.39314 * 119.72436 * 180.02562 * 16 14 13 18 18 C 1.38584 * 119.05797 * 179.97438 * 17 16 14 19 19 C 1.38623 * 118.49187 * 359.97438 * 18 17 16 20 20 C 1.50696 * 120.32575 * 180.02562 * 19 18 17 21 21 C 1.53000 * 117.50175 * 188.62218 * 20 19 18 22 22 C 1.52997 * 60.00347 * 252.51187 * 21 20 19 23 23 C 1.38557 * 119.35130 * 0.27802 * 19 18 17 24 24 N 1.31523 * 120.90389 * 359.42625 * 23 19 18 25 25 C 1.51231 * 122.09624 * 208.15815 * 12 11 10 26 26 C 1.56583 * 104.17905 * 141.04138 * 25 12 11 27 27 C 1.56283 * 106.06982 * 353.42646 * 26 25 12 28 28 C 1.42696 * 127.10928 * 179.97438 * 9 7 2 29 29 H 1.08996 * 108.16266 * 256.51441 * 28 9 7 30 30 H 0.97004 * 119.99926 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.04578 * 69.39140 * 10 9 7 32 32 H 1.09003 * 110.04692 * 307.92306 * 10 9 7 33 33 H 1.08998 * 111.15348 * 265.55789 * 11 10 9 34 34 H 1.09006 * 111.15015 * 141.33526 * 11 10 9 35 35 H 0.97005 * 119.99872 * 241.01974 * 13 12 11 36 36 H 1.07999 * 120.46627 * 359.95003 * 17 16 14 37 37 H 1.08005 * 120.75359 * 180.02562 * 18 17 16 38 38 H 1.09004 * 115.56587 * 334.31023 * 20 19 18 39 39 H 1.09002 * 117.49696 * 0.02562 * 21 20 19 40 40 H 1.09002 * 117.50343 * 145.02291 * 21 20 19 41 41 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 42 42 H 1.08997 * 117.50044 * 107.48590 * 22 21 20 43 43 H 1.08000 * 119.55012 * 179.70453 * 23 19 18 44 44 H 1.09001 * 110.40586 * 260.69548 * 25 12 11 45 45 H 1.09001 * 110.40488 * 23.12019 * 25 12 11 46 46 H 1.09000 * 110.44678 * 234.07487 * 26 25 12 47 47 H 1.08998 * 109.79593 * 112.43044 * 26 25 12 48 48 H 1.08998 * 110.96769 * 217.20146 * 27 26 25 49 49 H 1.09004 * 110.96500 * 93.43927 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1560 -2.5727 0.0005 11 6 -0.4133 -4.0971 0.2255 12 6 0.8811 -4.5068 0.9119 13 7 0.9173 -4.0302 2.2968 14 6 -0.0156 -4.4447 3.1767 15 8 -0.8866 -5.2140 2.8215 16 6 0.0206 -3.9622 4.5772 17 6 -0.9463 -4.3948 5.4820 18 6 -0.8990 -3.9352 6.7886 19 6 0.1144 -3.0591 7.1451 20 6 0.2054 -2.5341 8.5547 21 6 1.2188 -1.4215 8.8302 22 6 1.4818 -2.8394 9.3413 23 6 1.0397 -2.6668 6.1914 24 7 0.9748 -3.1227 4.9595 25 6 1.4390 -5.9083 0.8044 26 6 2.9857 -5.6971 0.6820 27 6 3.2032 -4.1546 0.5570 28 6 1.8806 -3.7027 -0.0016 29 1 1.7895 -4.1092 -1.0088 30 1 -0.4850 0.8401 0.0004 31 1 -0.5721 -2.2609 -0.9574 32 1 -0.6040 -1.9948 0.8089 33 1 -0.5376 -4.6193 -0.7232 34 1 -1.2722 -4.2592 0.8768 35 1 1.6128 -3.4162 2.5804 36 1 -1.7220 -5.0782 5.1695 37 1 -1.6345 -4.2531 7.5128 38 1 -0.7331 -2.5085 9.1086 39 1 1.8194 -1.0689 7.9918 40 1 0.9471 -0.6639 9.5653 41 1 1.3829 -3.0146 10.4126 42 1 2.2556 -3.4200 8.8392 43 1 1.8278 -1.9806 6.4645 44 1 1.1865 -6.4871 1.6929 45 1 1.0601 -6.4005 -0.0913 46 1 3.3703 -6.2037 -0.2032 47 1 3.4818 -6.0752 1.5759 48 1 4.0158 -3.9299 -0.1338 49 1 3.3879 -3.7064 1.5333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992469963.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:42 Heat of formation + Delta-G solvation = 50.762703 kcal Electronic energy + Delta-G solvation = -30603.961722 eV Core-core repulsion = 26725.083708 eV Total energy + Delta-G solvation = -3878.878014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.14277 -41.32858 -39.42706 -37.90780 -36.17576 -34.54608 -33.73550 -33.30495 -32.18783 -31.32218 -28.56429 -27.49267 -26.18906 -25.83329 -24.95765 -23.14933 -22.83729 -22.11408 -21.52896 -21.25326 -20.17975 -19.20785 -18.37313 -18.00052 -17.35710 -16.70920 -16.40843 -16.36740 -16.14703 -15.75826 -15.72893 -15.63213 -15.40555 -15.16249 -14.45417 -14.29829 -14.09837 -14.05079 -13.69439 -13.57574 -13.05040 -12.97900 -12.86335 -12.74298 -12.63690 -12.33748 -12.19720 -12.14116 -12.06491 -12.01449 -11.79528 -11.57014 -11.37433 -11.35205 -11.24955 -10.87740 -10.80398 -10.72537 -10.43368 -10.01071 -9.74264 -8.87216 -7.83952 -5.19436 -0.41562 0.21937 1.45075 1.46705 1.55055 1.71065 2.18161 2.49874 2.72411 3.06617 3.10619 3.12480 3.36066 3.53529 3.70618 3.77984 3.86291 3.87359 3.89726 4.01665 4.09429 4.13790 4.25764 4.32440 4.33708 4.38455 4.41811 4.56204 4.62035 4.68813 4.78813 4.84705 4.92756 4.95051 4.97242 5.03594 5.06057 5.07828 5.10039 5.21690 5.26517 5.26987 5.27829 5.47807 5.54264 5.55994 5.58883 5.65857 5.77268 6.17658 6.51339 6.81749 7.03881 7.23518 7.76839 8.49503 9.28141 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.004107 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3067.946290 B = 6816.300563 C = 8537.072398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.064 4.064 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.265 1.265 7 C -0.231 4.231 8 H 0.088 0.912 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.131 4.131 12 C 0.133 3.867 13 N -0.669 5.669 14 C 0.563 3.437 15 O -0.567 6.567 16 C 0.047 3.953 17 C -0.112 4.112 18 C -0.073 4.073 19 C -0.075 4.075 20 C -0.127 4.127 21 C -0.177 4.177 22 C -0.155 4.155 23 C 0.083 3.917 24 N -0.475 5.475 25 C -0.107 4.107 26 C -0.101 4.101 27 C -0.112 4.112 28 C 0.146 3.854 29 H 0.023 0.977 30 H 0.244 0.756 31 H 0.002 0.998 32 H 0.021 0.979 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.151 0.849 37 H 0.178 0.822 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.174 0.826 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.414 -10.374 17.936 21.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.256 4.256 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.227 1.227 6 H -0.190 1.190 7 C -0.360 4.360 8 H 0.106 0.894 9 N -0.319 5.319 10 C 0.068 3.932 11 C -0.170 4.170 12 C 0.046 3.954 13 N -0.317 5.317 14 C 0.349 3.651 15 O -0.447 6.447 16 C -0.090 4.090 17 C -0.133 4.133 18 C -0.099 4.099 19 C -0.077 4.077 20 C -0.146 4.146 21 C -0.214 4.214 22 C -0.192 4.192 23 C -0.077 4.077 24 N -0.186 5.186 25 C -0.145 4.145 26 C -0.139 4.139 27 C -0.151 4.151 28 C 0.037 3.963 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.243 0.757 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.155 0.845 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.109 0.891 43 H 0.191 0.809 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.093 0.907 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.422 -10.431 16.965 20.207 hybrid contribution -0.438 1.489 0.155 1.560 sum 2.984 -8.942 17.120 19.544 Atomic orbital electron populations 1.70162 1.06466 1.25011 1.58481 1.25586 0.96353 1.00900 1.02806 0.85145 0.77802 0.79472 0.77344 1.21477 1.22670 1.19003 1.19397 0.90847 0.83255 1.42460 0.89444 1.43764 1.01810 1.00464 1.85894 1.21638 0.83453 0.90906 0.97179 1.22683 0.97606 0.96486 1.00219 1.21666 0.97072 0.95485 0.81206 1.45587 1.30011 1.46881 1.09258 1.18200 0.81396 0.80602 0.84874 1.90673 1.37254 1.37408 1.79346 1.21158 0.95115 0.98083 0.94691 1.22239 0.98133 0.99290 0.93659 1.21769 0.98072 0.94684 0.95346 1.20649 0.94810 0.95899 0.96325 1.21071 0.97116 1.04961 0.91445 1.23198 1.01717 0.92461 1.03986 1.23121 0.96840 0.98400 1.00864 1.23065 0.99202 0.98157 0.87296 1.67536 1.22501 1.08610 1.19920 1.22056 0.96234 0.93679 1.02555 1.22897 0.94197 0.93703 1.03107 1.21877 0.96137 0.96406 1.00633 1.21062 0.94245 0.85309 0.95713 0.95973 0.94718 0.97980 0.96042 0.89764 0.91595 0.75700 0.83139 0.80474 0.84529 0.88748 0.86583 0.86214 0.89063 0.80938 0.91781 0.89542 0.89212 0.90593 0.90676 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.87 10.55 21.65 0.23 -58.64 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 3 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.23 -12.82 10.29 84.03 0.86 -11.96 16 8 H 0.09 4.59 7.83 -2.91 -0.02 4.57 16 9 N -0.60 -30.69 3.16 -668.65 -2.11 -32.80 16 10 C 0.19 10.17 5.33 86.96 0.46 10.63 16 11 C -0.13 -5.63 6.10 31.43 0.19 -5.44 16 12 C 0.13 5.10 0.42 4.32 0.00 5.11 16 13 N -0.67 -26.53 4.47 -422.19 -1.89 -28.41 16 14 C 0.56 22.20 7.20 86.88 0.63 22.83 16 15 O -0.57 -23.79 14.44 -3.77 -0.05 -23.85 16 16 C 0.05 1.60 6.75 41.91 0.28 1.89 16 17 C -0.11 -3.08 9.63 22.61 0.22 -2.86 16 18 C -0.07 -1.48 9.88 22.44 0.22 -1.26 16 19 C -0.07 -1.51 5.63 -19.70 -0.11 -1.62 16 20 C -0.13 -1.70 6.06 -11.54 -0.07 -1.77 16 21 C -0.18 -2.14 9.87 30.59 0.30 -1.84 16 22 C -0.16 -1.68 10.17 30.60 0.31 -1.37 16 23 C 0.08 2.13 10.47 84.82 0.89 3.02 16 24 N -0.47 -15.87 9.54 -184.91 -1.76 -17.64 16 25 C -0.11 -3.24 6.24 31.27 0.20 -3.05 16 26 C -0.10 -2.62 6.95 32.99 0.23 -2.39 16 27 C -0.11 -3.68 6.46 30.93 0.20 -3.48 16 28 C 0.15 5.98 2.65 46.47 0.12 6.11 16 29 H 0.02 0.94 7.98 -2.39 -0.02 0.93 16 30 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 31 H 0.00 0.11 7.98 -2.39 -0.02 0.10 16 32 H 0.02 1.29 7.05 -2.39 -0.02 1.27 16 33 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.07 2.98 6.27 -2.38 -0.01 2.96 16 35 H 0.41 16.89 6.89 -92.70 -0.64 16.25 16 36 H 0.15 3.93 7.64 -2.91 -0.02 3.91 16 37 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.14 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.09 1.29 6.19 -2.39 -0.01 1.28 16 40 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.17 3.70 6.03 -2.91 -0.02 3.68 16 44 H 0.06 2.01 7.73 -2.39 -0.02 1.99 16 45 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.06 1.99 7.17 -2.38 -0.02 1.97 16 Total: -1.00 -72.67 387.04 2.17 -70.50 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.33 Total: 33.09 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 5.40 Total: 9.35 kcal Atomic # 7 Polarization: -131.96 SS G_CDS: -5.54 Total: -137.49 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.05 Total: -23.85 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -72.67 2.17 -70.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992469963.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.267 kcal (2) G-P(sol) polarization free energy of solvation -72.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds