Wall clock time and date at job start Wed Apr 1 2020 00:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99666 * 2 1 4 4 H 1.48497 * 109.47379 * 269.99910 * 3 2 1 5 5 H 1.48502 * 109.47365 * 30.00038 * 3 2 1 6 6 H 1.48505 * 109.47138 * 149.99994 * 3 2 1 7 7 C 1.38804 * 120.00370 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00257 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00294 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99964 * 180.02562 * 9 7 2 11 11 C 1.53351 * 109.41768 * 275.12420 * 10 9 7 12 12 C 1.53196 * 109.14679 * 178.67499 * 11 10 9 13 13 N 1.46921 * 108.89345 * 54.58586 * 12 11 10 14 14 C 1.34775 * 120.63698 * 126.33655 * 13 12 11 15 15 O 1.21552 * 119.99580 * 354.18562 * 14 13 12 16 16 C 1.47855 * 120.00212 * 174.17640 * 14 13 12 17 17 C 1.39613 * 120.11420 * 318.70177 * 16 14 13 18 18 C 1.37982 * 120.00683 * 179.76638 * 17 16 14 19 19 C 1.38244 * 120.22603 * 0.51318 * 18 17 16 20 20 C 1.38973 * 120.22152 * 359.74080 * 19 18 17 21 21 N 1.39710 * 120.00691 * 179.97438 * 20 19 18 22 22 C 1.48233 * 111.00054 * 120.05853 * 21 20 19 23 23 C 1.51122 * 105.36097 * 144.90376 * 22 21 20 24 24 C 1.30963 * 109.45487 * 343.02538 * 23 22 21 25 25 C 1.48222 * 111.00202 * 233.69878 * 21 20 19 26 26 C 1.38687 * 119.99484 * 359.97438 * 20 19 18 27 27 C 1.46927 * 118.73758 * 306.31617 * 13 12 11 28 28 C 1.53046 * 109.45875 * 155.00282 * 10 9 7 29 29 H 0.96995 * 120.00019 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99473 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46292 * 35.03066 * 10 9 7 32 32 H 1.08998 * 109.68033 * 58.71807 * 11 10 9 33 33 H 1.08994 * 109.48047 * 298.51523 * 11 10 9 34 34 H 1.08998 * 109.59162 * 294.71981 * 12 11 10 35 35 H 1.09000 * 109.58099 * 174.43821 * 12 11 10 36 36 H 1.08002 * 119.99481 * 359.97438 * 17 16 14 37 37 H 1.08001 * 119.88626 * 180.25464 * 18 17 16 38 38 H 1.08007 * 119.88857 * 179.76486 * 19 18 17 39 39 H 1.08998 * 110.26722 * 263.87455 * 22 21 20 40 40 H 1.08997 * 110.26645 * 25.92779 * 22 21 20 41 41 H 1.07991 * 125.27142 * 163.04449 * 23 22 21 42 42 H 1.08001 * 125.26817 * 180.02562 * 24 23 22 43 43 H 1.08997 * 110.27028 * 334.06777 * 25 21 20 44 44 H 1.09002 * 110.26976 * 96.12909 * 25 21 20 45 45 H 1.07997 * 120.11569 * 180.02562 * 26 20 19 46 46 H 1.08997 * 109.59331 * 173.39570 * 27 13 12 47 47 H 1.09002 * 109.58682 * 293.67946 * 27 13 12 48 48 H 1.09000 * 109.49666 * 61.43041 * 28 10 9 49 49 H 1.08998 * 109.49443 * 301.33846 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4707 0.0000 11 6 4.2558 -2.9765 1.4406 12 6 4.9933 -4.3192 1.4305 13 7 6.2671 -4.1571 0.7165 14 6 7.4295 -4.5184 1.2950 15 8 7.4436 -4.8839 2.4542 16 6 8.6875 -4.4704 0.5196 17 6 8.7090 -4.9022 -0.8079 18 6 9.8831 -4.8519 -1.5310 19 6 11.0434 -4.3847 -0.9424 20 6 11.0340 -3.9575 0.3800 21 7 12.2094 -3.4867 0.9705 22 6 12.0503 -2.0853 1.4266 23 6 12.8653 -1.9822 2.6951 24 6 13.1182 -3.1839 3.1500 25 6 12.4975 -4.2109 2.2313 26 6 9.8577 -3.9985 1.1135 27 6 6.2496 -3.5939 -0.6404 28 6 5.4995 -2.2584 -0.6104 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3619 -0.0004 31 1 3.5648 -3.2062 -0.5895 32 1 3.2687 -3.1070 1.8839 33 1 4.8248 -2.2533 2.0247 34 1 4.3833 -5.0674 0.9244 35 1 5.1866 -4.6375 2.4549 36 1 7.8057 -5.2725 -1.2699 37 1 9.8966 -5.1826 -2.5590 38 1 11.9603 -4.3513 -1.5123 39 1 12.4349 -1.3972 0.6738 40 1 11.0016 -1.8722 1.6333 41 1 13.1888 -1.0603 3.1552 42 1 13.6824 -3.4065 4.0436 43 1 11.5746 -4.5964 2.6647 44 1 13.1982 -5.0253 2.0473 45 1 9.8481 -3.6666 2.1411 46 1 7.2718 -3.4311 -0.9818 47 1 5.7443 -4.2840 -1.3160 48 1 6.0567 -1.5417 -0.0070 49 1 5.3956 -1.8766 -1.6260 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997040934.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:53 Heat of formation + Delta-G solvation = 58.880170 kcal Electronic energy + Delta-G solvation = -29502.851142 eV Core-core repulsion = 25624.325128 eV Total energy + Delta-G solvation = -3878.526014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13782 -40.11197 -38.16470 -37.38859 -34.73807 -33.36619 -32.14161 -31.63852 -30.73215 -29.82936 -28.84494 -28.80949 -25.51416 -24.14197 -23.66684 -22.84729 -22.15237 -21.29933 -20.43359 -19.79072 -19.33633 -18.01880 -17.40507 -16.85842 -16.46176 -16.26157 -15.72422 -15.25451 -14.87112 -14.72740 -14.47361 -14.13843 -14.11755 -13.90641 -13.51638 -13.44891 -13.31425 -13.20277 -12.94884 -12.66861 -12.51142 -12.47498 -12.25373 -11.99739 -11.80307 -11.72181 -11.65332 -11.06690 -11.04621 -10.92971 -10.56424 -10.33995 -10.21328 -10.02277 -9.81466 -9.62920 -9.29371 -9.01524 -8.94494 -8.78494 -8.61591 -7.32301 -5.81222 -3.17325 0.65831 0.87392 1.75358 2.59547 2.91910 3.34151 3.37031 3.39737 3.42415 3.43386 4.22294 4.28158 4.42182 4.54713 4.55130 4.68350 4.83529 4.92788 4.94917 5.01461 5.07620 5.10866 5.12190 5.21952 5.22623 5.28683 5.29614 5.42634 5.48758 5.52436 5.54419 5.65940 5.75347 5.84146 5.93138 5.94071 5.97408 6.00334 6.01428 6.06739 6.09047 6.19812 6.33725 6.40070 6.41327 6.46751 6.78852 6.90504 6.91142 7.36262 7.94159 8.07507 8.37754 9.15725 9.88453 10.07912 11.36974 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014527 B = 0.002562 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.967594 B =10928.404124 C =11550.370469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.184 3.816 11 C -0.150 4.150 12 C 0.112 3.888 13 N -0.599 5.599 14 C 0.557 3.443 15 O -0.541 6.541 16 C -0.112 4.112 17 C -0.090 4.090 18 C -0.118 4.118 19 C -0.072 4.072 20 C 0.067 3.933 21 N -0.467 5.467 22 C 0.053 3.947 23 C -0.167 4.167 24 C -0.168 4.168 25 C 0.051 3.949 26 C -0.098 4.098 27 C 0.102 3.898 28 C -0.143 4.143 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.128 0.872 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.188 -9.751 -1.102 28.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.191 4.191 12 C -0.010 4.010 13 N -0.331 5.331 14 C 0.345 3.655 15 O -0.420 6.420 16 C -0.116 4.116 17 C -0.108 4.108 18 C -0.137 4.137 19 C -0.091 4.091 20 C -0.027 4.027 21 N -0.188 5.188 22 C -0.073 4.073 23 C -0.186 4.186 24 C -0.186 4.186 25 C -0.075 4.075 26 C -0.118 4.118 27 C -0.021 4.021 28 C -0.182 4.182 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.146 0.854 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 27.327 -10.058 -0.919 29.134 hybrid contribution -0.186 1.459 0.689 1.624 sum 27.141 -8.599 -0.230 28.472 Atomic orbital electron populations 1.69697 1.05100 1.25867 1.57388 1.24674 0.95224 0.97217 1.01964 0.86559 0.79202 0.85040 0.77749 1.21067 1.21747 1.20410 1.19061 0.80509 0.94701 1.43152 0.89156 1.42795 1.04039 1.01938 1.90228 1.20209 0.90016 0.89426 0.92962 1.22684 1.00500 0.94931 1.00967 1.21749 0.82743 0.98642 0.97898 1.48077 1.06528 1.61502 1.16981 1.18352 0.83339 0.77561 0.86269 1.90769 1.86378 1.48238 1.16576 1.19803 0.93823 1.03267 0.94712 1.21480 0.98974 0.97871 0.92519 1.21088 0.92018 1.00168 1.00406 1.21136 0.98648 0.96047 0.93281 1.18925 0.88648 1.00611 0.94503 1.63339 1.29602 1.02919 1.22935 1.22238 0.99380 0.90069 0.95605 1.23574 0.99232 0.98635 0.97133 1.23570 1.00389 0.94751 0.99876 1.22269 1.00616 0.97124 0.87516 1.21658 0.91753 0.98304 1.00132 1.22094 1.01816 0.95409 0.82772 1.22254 0.97485 0.96212 1.02294 0.93027 0.80679 0.92429 0.90100 0.92404 0.91319 0.89478 0.84765 0.84752 0.84824 0.89014 0.91677 0.84352 0.84372 0.91410 0.89092 0.85371 0.89271 0.90835 0.91911 0.90250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.97 55.49 0.78 -28.14 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.84 27.73 -169.99 -4.71 17.13 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.69 10.41 -15.06 -0.16 -6.84 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 N -0.75 -17.03 4.93 -53.23 -0.26 -17.29 16 10 C 0.18 3.29 2.73 -67.73 -0.19 3.10 16 11 C -0.15 -2.56 5.69 -26.45 -0.15 -2.71 16 12 C 0.11 1.62 6.43 -3.71 -0.02 1.60 16 13 N -0.60 -8.09 2.97 -173.88 -0.52 -8.61 16 14 C 0.56 8.08 7.31 -12.33 -0.09 7.99 16 15 O -0.54 -9.68 16.36 5.32 0.09 -9.59 16 16 C -0.11 -1.32 5.08 -104.99 -0.53 -1.86 16 17 C -0.09 -0.82 7.39 -39.16 -0.29 -1.11 16 18 C -0.12 -0.90 10.02 -39.67 -0.40 -1.30 16 19 C -0.07 -0.61 9.96 -39.31 -0.39 -1.00 16 20 C 0.07 0.67 4.91 -83.83 -0.41 0.25 16 21 N -0.47 -4.38 5.58 -171.20 -0.96 -5.34 16 22 C 0.05 0.46 6.47 -4.03 -0.03 0.43 16 23 C -0.17 -1.27 10.95 -35.81 -0.39 -1.66 16 24 C -0.17 -1.25 10.95 -35.81 -0.39 -1.65 16 25 C 0.05 0.44 6.44 -4.04 -0.03 0.41 16 26 C -0.10 -1.11 7.28 -38.96 -0.28 -1.40 16 27 C 0.10 1.16 4.92 -3.71 -0.02 1.15 16 28 C -0.14 -2.04 5.55 -26.61 -0.15 -2.19 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.36 8.17 5.66 -40.82 -0.23 7.94 16 31 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 36 H 0.13 1.04 6.69 -52.49 -0.35 0.69 16 37 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.62 6.73 -51.93 -0.35 0.27 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.07 0.65 6.31 -51.93 -0.33 0.32 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.13 1.57 7.03 -52.49 -0.37 1.20 16 46 H 0.09 0.88 4.80 -51.93 -0.25 0.63 16 47 H 0.07 0.73 8.13 -51.93 -0.42 0.30 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -33.32 386.27 -11.10 -44.42 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.32 Total: 8.30 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -4.01 Total: -6.70 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -0.96 Total: -59.38 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.32 -11.10 -44.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997040934.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.305 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds