Wall clock time and date at job start Wed Apr 1 2020 00:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00604 * 2 1 4 4 H 1.48493 * 109.47379 * 274.25006 * 3 2 1 5 5 H 1.48507 * 109.46463 * 34.24666 * 3 2 1 6 6 H 1.48502 * 109.47247 * 154.24380 * 3 2 1 7 7 C 1.38825 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99783 * 339.30480 * 7 2 1 9 9 N 1.36936 * 119.99922 * 159.30335 * 7 2 1 10 10 C 1.46849 * 120.38245 * 331.82326 * 9 7 2 11 11 C 1.53351 * 108.81176 * 236.88159 * 10 9 7 12 12 C 1.53187 * 108.76763 * 308.68613 * 11 10 9 13 13 C 1.52843 * 117.65524 * 269.97012 * 12 11 10 14 14 C 1.52821 * 117.71066 * 201.11238 * 12 11 10 15 15 H 1.08995 * 117.52563 * 0.15044 * 14 12 11 16 16 N 1.46497 * 117.50017 * 215.09884 * 14 12 11 17 17 C 1.34781 * 119.99964 * 155.02875 * 16 14 12 18 18 O 1.21277 * 120.00089 * 359.97438 * 17 16 14 19 19 C 1.50704 * 119.99789 * 179.97438 * 17 16 14 20 20 H 1.08998 * 110.25865 * 299.39409 * 19 17 16 21 21 C 1.54336 * 110.29233 * 177.24299 * 19 17 16 22 22 C 1.54360 * 102.39191 * 214.73083 * 21 19 17 23 23 C 1.51218 * 105.18469 * 26.06315 * 22 21 19 24 24 C 1.38751 * 130.68734 * 162.41188 * 23 22 21 25 25 C 1.38573 * 118.55576 * 180.37635 * 24 23 22 26 26 C 1.38227 * 118.99058 * 0.28256 * 25 24 23 27 27 N 1.31686 * 120.80038 * 359.97438 * 26 25 24 28 28 C 1.32293 * 122.03761 * 359.97438 * 27 26 25 29 29 C 1.53181 * 115.07574 * 55.44717 * 12 11 10 30 30 C 1.46837 * 120.38517 * 151.80180 * 9 7 2 31 31 H 0.97003 * 119.99788 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.58003 * 117.08779 * 10 9 7 33 33 H 1.08999 * 109.58289 * 356.68292 * 10 9 7 34 34 H 1.08996 * 109.59187 * 188.89735 * 11 10 9 35 35 H 1.09003 * 109.58532 * 68.47114 * 11 10 9 36 36 H 1.08994 * 117.49896 * 144.81723 * 13 12 11 37 37 H 1.08996 * 117.50120 * 359.76345 * 13 12 11 38 38 H 0.97000 * 120.00138 * 335.02467 * 16 14 12 39 39 H 1.09002 * 110.82150 * 332.95911 * 21 19 17 40 40 H 1.09007 * 110.82353 * 96.30284 * 21 19 17 41 41 H 1.09001 * 110.31569 * 145.19874 * 22 21 19 42 42 H 1.09011 * 110.31219 * 267.37457 * 22 21 19 43 43 H 1.07997 * 120.72175 * 0.65375 * 24 23 22 44 44 H 1.08007 * 120.50103 * 180.26627 * 25 24 23 45 45 H 1.07999 * 119.59490 * 180.02562 * 26 25 24 46 46 H 1.08998 * 109.59170 * 64.34573 * 29 12 11 47 47 H 1.08998 * 109.58813 * 184.77462 * 29 12 11 48 48 H 1.08997 * 109.57902 * 242.92294 * 30 9 7 49 49 H 1.09000 * 109.57825 * 3.31567 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4080 2.0982 -1.3961 5 1 1.4955 2.6250 0.7880 6 1 3.5899 1.4157 0.6084 7 6 2.0102 -1.2023 0.0005 8 1 1.5224 -2.1072 0.3315 9 7 3.3133 -1.2408 -0.4186 10 6 3.8058 -0.2690 -1.4032 11 6 4.3786 -1.0299 -2.6052 12 6 5.3751 -2.0763 -2.0966 13 6 6.8377 -1.6549 -1.9585 14 6 6.4166 -2.6040 -3.0827 15 1 6.3972 -2.2055 -4.0970 16 7 6.8095 -4.0103 -2.9635 17 6 7.2958 -4.6672 -4.0352 18 8 7.4077 -4.0943 -5.0983 19 6 7.7005 -6.1137 -3.9125 20 1 8.4965 -6.2217 -3.1757 21 6 8.1580 -6.6596 -5.2817 22 6 7.6690 -8.1229 -5.2350 23 6 6.4953 -8.1181 -4.2816 24 6 5.4783 -9.0432 -4.0942 25 6 4.5095 -8.7783 -3.1395 26 6 4.5867 -7.6039 -2.4146 27 7 5.5637 -6.7459 -2.6229 28 6 6.5078 -6.9626 -3.5240 29 6 4.8160 -3.0551 -1.0594 30 6 4.2344 -2.2539 0.1117 31 1 -0.4850 0.8401 -0.0004 32 1 4.5868 0.3435 -0.9528 33 1 2.9838 0.3670 -1.7315 34 1 4.8883 -0.3326 -3.2700 35 1 3.5702 -1.5258 -3.1426 36 1 7.4070 -2.0769 -1.1304 37 1 7.0949 -0.6319 -2.2333 38 1 6.7197 -4.4686 -2.1134 39 1 7.6777 -6.1162 -6.0955 40 1 9.2431 -6.6131 -5.3744 41 1 7.3535 -8.4483 -6.2263 42 1 8.4571 -8.7734 -4.8555 43 1 5.4450 -9.9521 -4.6765 44 1 3.7061 -9.4787 -2.9647 45 1 3.8370 -7.3878 -1.6678 46 1 4.0314 -3.6602 -1.5135 47 1 5.6160 -3.7014 -0.6983 48 1 5.0419 -1.7642 0.6561 49 1 3.6944 -2.9242 0.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016798281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:22 Heat of formation + Delta-G solvation = 49.607689 kcal Electronic energy + Delta-G solvation = -30053.464339 eV Core-core repulsion = 26174.536240 eV Total energy + Delta-G solvation = -3878.928099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.30259 -39.76917 -38.55493 -36.32651 -35.60334 -33.39364 -32.67551 -31.65417 -30.44603 -29.66557 -28.94239 -28.23474 -24.14460 -23.80470 -23.31397 -22.93492 -22.06082 -21.33005 -20.75540 -20.09788 -18.33526 -17.63575 -17.05073 -16.65141 -16.51506 -16.06108 -15.51946 -15.23627 -14.82991 -14.51500 -14.19906 -13.97873 -13.83312 -13.77787 -13.64212 -13.45226 -13.09649 -12.90134 -12.80894 -12.34582 -12.21749 -12.11652 -12.01338 -11.89303 -11.81933 -11.62291 -11.39152 -11.10815 -10.72419 -10.53223 -10.25684 -10.19168 -9.95367 -9.87950 -9.75155 -9.55113 -9.45470 -9.37566 -9.00589 -8.67180 -8.36491 -6.89058 -5.91486 -3.26477 0.77369 0.99206 2.49585 3.08327 3.35363 3.50553 3.51411 3.55128 3.61748 3.97552 4.14665 4.39715 4.51362 4.56755 4.61385 4.65013 4.84711 4.90626 4.95503 5.01975 5.03275 5.09259 5.14326 5.20834 5.25585 5.39113 5.42295 5.48442 5.49236 5.61876 5.81923 5.84829 5.87460 5.90835 5.94222 5.98829 6.07615 6.13385 6.25022 6.39220 6.40269 6.45728 6.51380 6.60835 6.68279 6.77601 6.78665 7.03556 7.56220 7.70933 8.02567 8.22055 8.37363 9.00007 9.76931 10.15843 11.24703 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.002954 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.763360 B = 9476.191204 C =10661.542843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.132 3.868 11 C -0.098 4.098 12 C -0.100 4.100 13 C -0.185 4.185 14 C 0.074 3.926 15 H 0.131 0.869 16 N -0.682 5.682 17 C 0.528 3.472 18 O -0.543 6.543 19 C -0.059 4.059 20 H 0.119 0.881 21 C -0.102 4.102 22 C -0.079 4.079 23 C -0.144 4.144 24 C -0.065 4.065 25 C -0.169 4.169 26 C 0.110 3.890 27 N -0.469 5.469 28 C 0.119 3.881 29 C -0.093 4.093 30 C 0.153 3.847 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.408 0.592 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.163 0.837 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.022 0.978 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.490 -18.814 -8.237 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.387 4.387 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.007 3.993 11 C -0.138 4.138 12 C -0.101 4.101 13 C -0.224 4.224 14 C -0.032 4.032 15 H 0.149 0.851 16 N -0.330 5.330 17 C 0.313 3.687 18 O -0.421 6.421 19 C -0.081 4.081 20 H 0.137 0.863 21 C -0.141 4.141 22 C -0.117 4.117 23 C -0.146 4.146 24 C -0.091 4.091 25 C -0.189 4.189 26 C -0.047 4.047 27 N -0.177 5.177 28 C -0.019 4.019 29 C -0.132 4.132 30 C 0.027 3.973 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.245 0.755 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.180 0.820 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.422 -17.556 -8.456 26.139 hybrid contribution 0.197 -0.047 0.070 0.214 sum 17.619 -17.603 -8.386 26.279 Atomic orbital electron populations 1.69842 1.05760 1.26481 1.53180 1.25297 0.95211 0.97580 0.99536 0.86934 0.80178 0.84700 0.76907 1.21682 1.23270 1.19478 1.18935 0.85171 0.94649 1.39934 0.89839 1.44271 1.08545 1.34618 1.45297 1.21277 0.97150 0.91976 0.88945 1.21682 0.97237 0.96203 0.98630 1.21904 0.89988 0.99425 0.98812 1.23560 0.98370 0.99831 1.00602 1.21832 1.03576 0.80887 0.96879 0.85146 1.45335 1.63217 1.11118 1.13367 1.20094 0.77003 0.87692 0.83912 1.90676 1.54940 1.68785 1.27708 1.20889 0.95244 0.91436 1.00547 0.86332 1.22286 1.02140 0.94242 0.95383 1.21008 0.94640 0.97607 0.98398 1.21395 0.97642 0.96108 0.99444 1.21070 0.92610 0.98601 0.96852 1.22145 1.00025 0.99299 0.97383 1.22730 0.94894 0.89402 0.97710 1.66792 1.01921 1.31997 1.17016 1.21346 0.94170 0.93650 0.92718 1.21558 0.99270 0.96121 0.96299 1.20868 0.92403 0.91017 0.92992 0.92840 0.95613 0.91045 0.92666 0.91223 0.88915 0.88420 0.75518 0.88706 0.89348 0.89924 0.89662 0.84924 0.84333 0.82027 0.91239 0.93072 0.95999 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.16 13.97 55.49 0.78 -27.39 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.68 24.40 -169.99 -4.15 18.53 16 4 H -0.29 -7.19 6.66 56.52 0.38 -6.82 16 5 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -6.81 6.65 56.52 0.38 -6.43 16 7 C -0.26 -7.28 10.00 -15.05 -0.15 -7.43 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.60 -14.46 2.71 -172.26 -0.47 -14.93 16 10 C 0.13 2.93 4.23 -3.67 -0.02 2.92 16 11 C -0.10 -1.82 5.83 -26.45 -0.15 -1.97 16 12 C -0.10 -1.63 1.94 -154.49 -0.30 -1.92 16 13 C -0.19 -2.59 9.86 -26.79 -0.26 -2.86 16 14 C 0.07 1.09 6.14 -68.01 -0.42 0.68 16 15 H 0.13 2.08 7.40 -51.93 -0.38 1.70 16 16 N -0.68 -9.10 5.12 -53.88 -0.28 -9.38 16 17 C 0.53 7.13 7.18 -10.98 -0.08 7.05 16 18 O -0.54 -9.02 15.08 5.56 0.08 -8.94 16 19 C -0.06 -0.59 3.26 -91.84 -0.30 -0.89 16 20 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.10 -0.84 6.33 -25.32 -0.16 -1.00 16 22 C -0.08 -0.53 6.77 -26.92 -0.18 -0.71 16 23 C -0.14 -1.31 6.16 -104.20 -0.64 -1.95 16 24 C -0.07 -0.52 10.17 -39.27 -0.40 -0.92 16 25 C -0.17 -1.38 10.12 -39.46 -0.40 -1.78 16 26 C 0.11 1.11 11.18 -17.62 -0.20 0.92 16 27 N -0.47 -5.61 9.59 -9.19 -0.09 -5.70 16 28 C 0.12 1.30 6.57 -82.04 -0.54 0.77 16 29 C -0.09 -1.55 5.37 -26.46 -0.14 -1.69 16 30 C 0.15 3.02 6.51 -3.68 -0.02 3.00 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.03 0.56 7.27 -51.93 -0.38 0.19 16 33 H 0.07 1.74 4.32 -51.93 -0.22 1.52 16 34 H 0.05 0.91 8.10 -51.93 -0.42 0.48 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.41 5.06 6.51 -40.82 -0.27 4.79 16 39 H 0.09 0.98 7.06 -51.93 -0.37 0.61 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.16 1.38 8.06 -52.49 -0.42 0.95 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.05 0.72 6.75 -51.93 -0.35 0.37 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.24 7.92 -51.93 -0.41 0.83 16 LS Contribution 383.27 15.07 5.78 5.78 Total: -1.00 -34.13 383.27 -10.28 -44.41 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.48 Total: 4.85 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.46 Total: -7.24 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.05 Total: -57.40 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.15 Total: 18.53 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.13 -10.28 -44.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016798281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.019 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds