Wall clock time and date at job start Wed Apr 1 2020 00:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 299.99989 * 3 2 1 6 6 H 1.48500 * 109.47362 * 60.00069 * 3 2 1 7 7 C 1.38813 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00236 * 162.83219 * 7 2 1 9 9 N 1.36934 * 119.99763 * 342.84304 * 7 2 1 10 10 C 1.46847 * 120.38005 * 330.67857 * 9 7 2 11 11 C 1.53352 * 108.81374 * 236.88760 * 10 9 7 12 12 C 1.53191 * 108.76853 * 308.68929 * 11 10 9 13 13 C 1.52843 * 117.65248 * 269.97110 * 12 11 10 14 14 C 1.52819 * 117.71058 * 201.11571 * 12 11 10 15 15 H 1.09001 * 117.52280 * 215.08926 * 14 12 11 16 16 N 1.46500 * 117.50449 * 0.13301 * 14 12 11 17 17 C 1.34777 * 119.99976 * 205.24794 * 16 14 12 18 18 O 1.21274 * 120.00181 * 359.73328 * 17 16 14 19 19 C 1.50703 * 119.99711 * 179.72599 * 17 16 14 20 20 H 1.08999 * 115.55197 * 34.33503 * 19 17 16 21 21 C 1.52995 * 117.49844 * 248.62782 * 19 17 16 22 22 C 1.53001 * 117.49498 * 180.02562 * 19 17 16 23 23 H 1.08993 * 117.49893 * 359.97438 * 22 19 17 24 24 C 1.50700 * 117.49377 * 215.00463 * 22 19 17 25 25 C 1.38670 * 120.41908 * 120.00355 * 24 22 19 26 26 C 1.38633 * 118.42451 * 180.02562 * 25 24 22 27 27 C 1.38228 * 119.15700 * 359.97438 * 26 25 24 28 28 N 1.31859 * 120.76339 * 0.02562 * 27 26 25 29 29 C 1.31886 * 121.72592 * 359.70428 * 28 27 26 30 30 C 1.53181 * 115.07422 * 55.44427 * 12 11 10 31 31 C 1.46837 * 120.38533 * 150.66738 * 9 7 2 32 32 H 0.96999 * 119.99957 * 359.97438 * 1 2 3 33 33 H 1.09004 * 109.57581 * 117.09440 * 10 9 7 34 34 H 1.08992 * 109.69477 * 356.75486 * 10 9 7 35 35 H 1.09000 * 109.58913 * 188.90163 * 11 10 9 36 36 H 1.09000 * 109.58729 * 68.47139 * 11 10 9 37 37 H 1.09004 * 117.49969 * 144.81722 * 13 12 11 38 38 H 1.08990 * 117.50707 * 359.75852 * 13 12 11 39 39 H 0.96997 * 119.99375 * 24.98329 * 16 14 12 40 40 H 1.09002 * 117.50034 * 359.97438 * 21 19 17 41 41 H 1.09003 * 117.50443 * 145.02789 * 21 19 17 42 42 H 1.08004 * 120.78865 * 359.97156 * 25 24 22 43 43 H 1.07991 * 120.41824 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.61771 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.61617 * 180.31221 * 29 28 27 46 46 H 1.08992 * 109.58883 * 64.34906 * 30 12 11 47 47 H 1.09008 * 109.58364 * 184.77527 * 30 12 11 48 48 H 1.08997 * 109.57958 * 242.91200 * 31 9 7 49 49 H 1.09005 * 109.58072 * 3.31327 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0541 -1.2229 -0.2766 9 7 1.3713 -2.3618 0.3488 10 6 0.2479 -2.3350 1.2942 11 6 0.5713 -3.2612 2.4728 12 6 0.9912 -4.6286 1.9243 13 6 -0.1045 -5.6711 1.7034 14 6 0.8850 -5.8325 2.8596 15 1 1.6437 -6.6098 2.7682 16 7 0.3854 -5.5936 4.2159 17 6 0.7258 -6.4300 5.2165 18 8 1.4417 -7.3831 4.9931 19 6 0.2169 -6.1806 6.6129 20 1 -0.7838 -5.7539 6.6794 21 6 1.2373 -5.7581 7.6717 22 6 0.6392 -7.1655 7.7049 23 1 1.2846 -7.9940 7.4133 24 6 -0.3607 -7.4718 8.7901 25 6 -0.8058 -8.7700 8.9887 26 6 -1.7263 -9.0048 9.9984 27 6 -2.1662 -7.9446 10.7686 28 7 -1.7210 -6.7226 10.5512 29 6 -0.8415 -6.4633 9.6032 30 6 2.1560 -4.5993 0.9300 31 6 1.8012 -3.6464 -0.2178 32 1 -0.4850 0.8400 0.0004 33 1 -0.6575 -2.6809 0.7955 34 1 0.0987 -1.3187 1.6586 35 1 -0.3121 -3.3751 3.1012 36 1 1.3866 -2.8364 3.0584 37 1 0.0037 -6.3420 0.8511 38 1 -1.1270 -5.3872 1.9519 39 1 -0.1871 -4.8313 4.3945 40 1 2.2768 -5.6608 7.3584 41 1 0.9080 -5.0531 8.4351 42 1 -0.4446 -9.5789 8.3708 43 1 -2.0948 -10.0033 10.1809 44 1 -2.8829 -8.1191 11.5574 45 1 -0.4961 -5.4504 9.4582 46 1 3.0567 -4.2468 1.4325 47 1 2.3241 -5.6011 0.5346 48 1 0.9920 -4.0735 -0.8102 49 1 2.6767 -3.4926 -0.8488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016840070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:29 Heat of formation + Delta-G solvation = 69.926033 kcal Electronic energy + Delta-G solvation = -28616.389226 eV Core-core repulsion = 24738.342196 eV Total energy + Delta-G solvation = -3878.047030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.90306 -40.01511 -38.70961 -36.84672 -35.45785 -33.18847 -32.78713 -31.54911 -31.14999 -30.13404 -28.29881 -25.36704 -24.65236 -24.35485 -23.67592 -22.49284 -21.83292 -21.23960 -20.63236 -20.15090 -18.26026 -17.93287 -17.43264 -16.63171 -16.51030 -15.96170 -15.64834 -15.01717 -14.92569 -14.59756 -14.38169 -14.20343 -14.13653 -13.62479 -13.43512 -13.42713 -13.07645 -12.88012 -12.67660 -12.43876 -12.30522 -12.12640 -11.76598 -11.54305 -11.45276 -11.38029 -11.01240 -10.86589 -10.75610 -10.51201 -10.30059 -10.10682 -10.05510 -9.93910 -9.81084 -9.72265 -9.60702 -9.40336 -9.18289 -8.50462 -8.46781 -6.65403 -5.81108 -3.24694 0.65260 0.88486 2.33461 2.94684 3.30222 3.35014 3.43480 3.45692 3.67015 3.96167 4.14921 4.24157 4.32345 4.44425 4.47917 4.51507 4.56522 4.66947 4.81951 4.87447 4.96717 5.10757 5.11814 5.12202 5.28246 5.37438 5.42769 5.49047 5.56690 5.61441 5.62604 5.76954 5.84454 5.93197 6.02622 6.07908 6.09220 6.26155 6.28825 6.42398 6.53792 6.55874 6.62818 6.68470 6.81140 6.97887 7.31290 7.47424 7.58377 7.62823 7.78293 8.15394 8.44680 9.19986 9.83348 10.40146 11.26662 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.002030 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.074512 B =13791.099168 C =14674.175707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.104 4.104 12 C -0.096 4.096 13 C -0.182 4.182 14 C 0.068 3.932 15 H 0.131 0.869 16 N -0.689 5.689 17 C 0.546 3.454 18 O -0.544 6.544 19 C -0.176 4.176 20 H 0.126 0.874 21 C -0.141 4.141 22 C -0.082 4.082 23 H 0.130 0.870 24 C -0.103 4.103 25 C -0.066 4.066 26 C -0.170 4.170 27 C 0.091 3.909 28 N -0.482 5.482 29 C 0.098 3.902 30 C -0.098 4.098 31 C 0.149 3.851 32 H 0.253 0.747 33 H 0.018 0.982 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.403 0.597 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.019 0.981 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 -16.495 18.059 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.144 4.144 12 C -0.097 4.097 13 C -0.221 4.221 14 C -0.038 4.038 15 H 0.148 0.852 16 N -0.337 5.337 17 C 0.332 3.668 18 O -0.422 6.422 19 C -0.197 4.197 20 H 0.144 0.856 21 C -0.178 4.178 22 C -0.101 4.101 23 H 0.148 0.852 24 C -0.105 4.105 25 C -0.092 4.092 26 C -0.189 4.189 27 C -0.065 4.065 28 N -0.190 5.190 29 C -0.058 4.058 30 C -0.138 4.138 31 C 0.023 3.977 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.239 0.761 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.173 0.827 45 H 0.174 0.826 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.037 0.963 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.895 -16.338 18.403 24.779 hybrid contribution 0.183 0.485 -0.540 0.748 sum -2.712 -15.853 17.864 24.037 Atomic orbital electron populations 1.70033 1.05276 1.25384 1.53950 1.25063 0.95272 0.98454 1.00884 0.86249 0.79443 0.83980 0.77272 1.20238 1.21744 1.21557 1.19238 0.92640 0.84885 1.41381 0.91735 1.43968 1.37444 1.01764 1.47985 1.20742 0.88838 0.98476 0.87208 1.21814 0.99075 0.93633 0.99849 1.21956 0.98165 0.91098 0.98488 1.23528 0.95947 1.03110 0.99500 1.21894 1.01036 1.02478 0.78371 0.85161 1.45322 1.51447 1.29324 1.07627 1.19491 0.79978 0.82111 0.85202 1.90678 1.37768 1.29867 1.83906 1.22360 1.01588 1.06530 0.89231 0.85616 1.23159 0.98781 0.96765 0.99108 1.20961 0.99294 0.95208 0.94677 0.85202 1.20147 0.98367 0.94576 0.97365 1.21492 0.94879 0.96528 0.96291 1.22171 0.98808 1.01017 0.96942 1.22811 0.97693 0.87946 0.98093 1.67732 1.10386 1.22976 1.17890 1.22733 0.92802 0.99542 0.90769 1.21694 0.95860 0.99296 0.96917 1.20857 0.97462 0.86918 0.92502 0.93698 0.96430 0.89207 0.93797 0.92033 0.88465 0.88918 0.76096 0.87216 0.87167 0.84545 0.84600 0.82721 0.82634 0.91823 0.92875 0.96261 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 11.21 55.49 0.62 -25.06 16 2 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.78 9.54 -15.06 -0.14 -6.92 16 8 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.37 2.93 -172.26 -0.51 -14.87 16 10 C 0.17 3.96 5.39 -3.67 -0.02 3.94 16 11 C -0.10 -1.85 5.37 -26.45 -0.14 -2.00 16 12 C -0.10 -1.54 1.94 -154.49 -0.30 -1.84 16 13 C -0.18 -2.59 9.86 -26.80 -0.26 -2.86 16 14 C 0.07 0.96 6.14 -68.01 -0.42 0.55 16 15 H 0.13 1.98 7.40 -51.93 -0.38 1.60 16 16 N -0.69 -8.62 5.35 -53.88 -0.29 -8.91 16 17 C 0.55 6.94 7.61 -10.98 -0.08 6.86 16 18 O -0.54 -8.74 15.82 5.56 0.09 -8.65 16 19 C -0.18 -1.62 5.83 -91.77 -0.54 -2.16 16 20 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.14 -1.09 9.57 -26.75 -0.26 -1.35 16 22 C -0.08 -0.71 5.57 -91.79 -0.51 -1.22 16 23 H 0.13 1.25 7.67 -51.93 -0.40 0.86 16 24 C -0.10 -0.86 5.62 -104.48 -0.59 -1.45 16 25 C -0.07 -0.50 9.89 -39.28 -0.39 -0.89 16 26 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 27 C 0.09 0.70 11.18 -17.54 -0.20 0.50 16 28 N -0.48 -4.71 10.36 -13.25 -0.14 -4.84 16 29 C 0.10 0.86 10.48 -17.55 -0.18 0.67 16 30 C -0.10 -1.67 5.83 -26.46 -0.15 -1.83 16 31 C 0.15 3.06 6.51 -3.68 -0.02 3.03 16 32 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 2.31 5.95 -51.93 -0.31 2.00 16 35 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.40 4.41 7.12 -40.82 -0.29 4.12 16 40 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.11 0.64 6.20 -51.93 -0.32 0.32 16 42 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 45 H 0.16 1.08 6.04 -52.49 -0.32 0.76 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.78 8.10 -51.92 -0.42 0.36 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 1.12 7.92 -51.93 -0.41 0.71 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -32.18 396.60 -11.37 -43.55 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.40 Total: 4.99 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -4.69 Total: -8.52 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: -0.31 Total: -53.68 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.18 -11.37 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016840070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.474 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds