Wall clock time and date at job start Wed Apr 1 2020 00:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48500 * 109.47310 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47149 * 299.99989 * 3 2 1 6 6 H 1.48500 * 109.47362 * 60.00069 * 3 2 1 7 7 C 1.38813 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00236 * 162.83219 * 7 2 1 9 9 N 1.36934 * 119.99763 * 342.84304 * 7 2 1 10 10 C 1.46847 * 120.38005 * 330.67857 * 9 7 2 11 11 C 1.53352 * 108.81374 * 236.88760 * 10 9 7 12 12 C 1.53191 * 108.76853 * 308.68929 * 11 10 9 13 13 C 1.52843 * 117.65248 * 269.97110 * 12 11 10 14 14 C 1.52819 * 117.71058 * 201.11571 * 12 11 10 15 15 H 1.09001 * 117.52280 * 215.08926 * 14 12 11 16 16 N 1.46500 * 117.50449 * 0.13301 * 14 12 11 17 17 C 1.34777 * 119.99976 * 205.24794 * 16 14 12 18 18 O 1.21274 * 120.00181 * 359.73328 * 17 16 14 19 19 C 1.50703 * 119.99711 * 179.72599 * 17 16 14 20 20 H 1.08999 * 115.55197 * 34.33503 * 19 17 16 21 21 C 1.52995 * 117.49844 * 248.62782 * 19 17 16 22 22 C 1.53001 * 117.49498 * 180.02562 * 19 17 16 23 23 H 1.08993 * 117.49893 * 359.97438 * 22 19 17 24 24 C 1.50700 * 117.49377 * 215.00463 * 22 19 17 25 25 C 1.38670 * 120.41908 * 120.00355 * 24 22 19 26 26 C 1.38633 * 118.42451 * 180.02562 * 25 24 22 27 27 C 1.38228 * 119.15700 * 359.97438 * 26 25 24 28 28 N 1.31859 * 120.76339 * 0.02562 * 27 26 25 29 29 C 1.31886 * 121.72592 * 359.70428 * 28 27 26 30 30 C 1.53181 * 115.07422 * 55.44427 * 12 11 10 31 31 C 1.46837 * 120.38533 * 150.66738 * 9 7 2 32 32 H 0.96999 * 119.99957 * 359.97438 * 1 2 3 33 33 H 1.09004 * 109.57581 * 117.09440 * 10 9 7 34 34 H 1.08992 * 109.69477 * 356.75486 * 10 9 7 35 35 H 1.09000 * 109.58913 * 188.90163 * 11 10 9 36 36 H 1.09000 * 109.58729 * 68.47139 * 11 10 9 37 37 H 1.09004 * 117.49969 * 144.81722 * 13 12 11 38 38 H 1.08990 * 117.50707 * 359.75852 * 13 12 11 39 39 H 0.96997 * 119.99375 * 24.98329 * 16 14 12 40 40 H 1.09002 * 117.50034 * 359.97438 * 21 19 17 41 41 H 1.09003 * 117.50443 * 145.02789 * 21 19 17 42 42 H 1.08004 * 120.78865 * 359.97156 * 25 24 22 43 43 H 1.07991 * 120.41824 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.61771 * 180.02562 * 27 26 25 45 45 H 1.07995 * 119.61617 * 180.31221 * 29 28 27 46 46 H 1.08992 * 109.58883 * 64.34906 * 30 12 11 47 47 H 1.09008 * 109.58364 * 184.77527 * 30 12 11 48 48 H 1.08997 * 109.57958 * 242.91200 * 31 9 7 49 49 H 1.09005 * 109.58072 * 3.31327 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0541 -1.2229 -0.2766 9 7 1.3713 -2.3618 0.3488 10 6 0.2479 -2.3350 1.2942 11 6 0.5713 -3.2612 2.4728 12 6 0.9912 -4.6286 1.9243 13 6 -0.1045 -5.6711 1.7034 14 6 0.8850 -5.8325 2.8596 15 1 1.6437 -6.6098 2.7682 16 7 0.3854 -5.5936 4.2159 17 6 0.7258 -6.4300 5.2165 18 8 1.4417 -7.3831 4.9931 19 6 0.2169 -6.1806 6.6129 20 1 -0.7838 -5.7539 6.6794 21 6 1.2373 -5.7581 7.6717 22 6 0.6392 -7.1655 7.7049 23 1 1.2846 -7.9940 7.4133 24 6 -0.3607 -7.4718 8.7901 25 6 -0.8058 -8.7700 8.9887 26 6 -1.7263 -9.0048 9.9984 27 6 -2.1662 -7.9446 10.7686 28 7 -1.7210 -6.7226 10.5512 29 6 -0.8415 -6.4633 9.6032 30 6 2.1560 -4.5993 0.9300 31 6 1.8012 -3.6464 -0.2178 32 1 -0.4850 0.8400 0.0004 33 1 -0.6575 -2.6809 0.7955 34 1 0.0987 -1.3187 1.6586 35 1 -0.3121 -3.3751 3.1012 36 1 1.3866 -2.8364 3.0584 37 1 0.0037 -6.3420 0.8511 38 1 -1.1270 -5.3872 1.9519 39 1 -0.1871 -4.8313 4.3945 40 1 2.2768 -5.6608 7.3584 41 1 0.9080 -5.0531 8.4351 42 1 -0.4446 -9.5789 8.3708 43 1 -2.0948 -10.0033 10.1809 44 1 -2.8829 -8.1191 11.5574 45 1 -0.4961 -5.4504 9.4582 46 1 3.0567 -4.2468 1.4325 47 1 2.3241 -5.6011 0.5346 48 1 0.9920 -4.0735 -0.8102 49 1 2.6767 -3.4926 -0.8488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016840070.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:28 Heat of formation + Delta-G solvation = 51.926408 kcal Electronic energy + Delta-G solvation = -28617.169748 eV Core-core repulsion = 24738.342196 eV Total energy + Delta-G solvation = -3878.827552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62209 -40.95607 -39.90464 -37.74790 -36.99054 -34.54691 -33.40439 -33.18399 -31.78326 -31.74599 -29.94013 -26.34862 -26.05601 -25.26943 -24.29148 -24.04690 -23.08202 -22.28329 -21.73863 -21.10480 -19.81385 -18.74336 -18.36785 -18.01315 -17.33074 -17.02893 -16.78383 -16.34873 -15.86079 -15.74504 -15.55761 -15.33908 -15.06366 -14.97009 -14.82092 -14.67506 -14.16423 -13.96606 -13.79257 -13.65043 -13.34104 -13.06932 -13.06028 -12.93046 -12.70047 -12.61655 -12.53774 -12.29265 -12.10494 -11.96831 -11.78352 -11.56650 -11.37108 -11.26495 -11.02592 -10.71169 -10.64814 -10.49281 -10.39282 -9.79186 -9.67500 -8.61062 -7.86033 -5.32646 0.09029 0.32515 1.39188 1.45633 1.48173 1.58247 1.99964 2.51668 2.63780 2.92845 3.06288 3.28740 3.35282 3.60911 3.64261 3.66958 3.78091 3.81970 3.86840 3.91357 3.98521 4.02249 4.09047 4.12705 4.14529 4.36222 4.53316 4.57612 4.61650 4.71494 4.72833 4.85590 4.89013 4.89863 4.93125 4.95928 5.01090 5.04607 5.09478 5.21904 5.22156 5.30717 5.35376 5.37611 5.50000 5.54828 5.66466 5.76333 5.79483 6.41985 6.49144 7.01965 7.17008 7.17379 7.89201 8.40111 9.18931 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017495 B = 0.002030 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.074512 B =13791.099168 C =14674.175707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.049 4.049 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.062 0.938 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.088 4.088 12 C -0.115 4.115 13 C -0.171 4.171 14 C 0.086 3.914 15 H 0.125 0.875 16 N -0.685 5.685 17 C 0.545 3.455 18 O -0.580 6.580 19 C -0.179 4.179 20 H 0.144 0.856 21 C -0.130 4.130 22 C -0.079 4.079 23 H 0.117 0.883 24 C -0.109 4.109 25 C -0.077 4.077 26 C -0.166 4.166 27 C 0.081 3.919 28 N -0.511 5.511 29 C 0.088 3.912 30 C -0.087 4.087 31 C 0.146 3.854 32 H 0.250 0.750 33 H -0.002 1.002 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.412 0.588 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.147 0.853 43 H 0.163 0.837 44 H 0.177 0.823 45 H 0.168 0.832 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.017 0.983 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -17.740 19.588 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.392 4.392 8 H 0.080 0.920 9 N -0.331 5.331 10 C 0.054 3.946 11 C -0.127 4.127 12 C -0.116 4.116 13 C -0.209 4.209 14 C -0.021 4.021 15 H 0.143 0.857 16 N -0.334 5.334 17 C 0.333 3.667 18 O -0.461 6.461 19 C -0.200 4.200 20 H 0.162 0.838 21 C -0.167 4.167 22 C -0.098 4.098 23 H 0.135 0.865 24 C -0.111 4.111 25 C -0.103 4.103 26 C -0.185 4.185 27 C -0.075 4.075 28 N -0.219 5.219 29 C -0.068 4.068 30 C -0.126 4.126 31 C 0.020 3.980 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.250 0.750 40 H 0.122 0.878 41 H 0.151 0.849 42 H 0.165 0.835 43 H 0.181 0.819 44 H 0.194 0.806 45 H 0.185 0.815 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.035 0.965 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.074 -17.595 19.942 26.772 hybrid contribution 0.232 0.786 -1.032 1.318 sum -2.842 -16.809 18.910 25.460 Atomic orbital electron populations 1.70173 1.06553 1.25740 1.55365 1.25769 0.96027 1.01358 1.01314 0.85269 0.78623 0.80110 0.76815 1.19329 1.22021 1.21501 1.19519 0.92782 0.86210 1.40680 0.92004 1.44236 1.37609 1.02418 1.48876 1.20552 0.87906 0.97719 0.88465 1.21532 0.99860 0.93491 0.97812 1.21802 0.99112 0.90829 0.99863 1.23607 0.95791 1.01732 0.99815 1.21687 1.00790 1.00404 0.79183 0.85686 1.45312 1.51352 1.29703 1.07046 1.20035 0.79113 0.81279 0.86268 1.90662 1.39434 1.31358 1.84616 1.22336 1.02697 1.07633 0.87284 0.83829 1.23269 0.98136 0.96687 0.98569 1.20856 0.99283 0.95192 0.94485 0.86506 1.20137 0.98572 0.95030 0.97382 1.21773 0.95085 0.96659 0.96776 1.22463 0.97960 1.02085 0.95987 1.23270 0.97900 0.87659 0.98702 1.67744 1.11273 1.24231 1.18683 1.22936 0.92868 1.00249 0.90745 1.21526 0.95851 0.99544 0.95728 1.20980 0.97062 0.86099 0.93837 0.94096 0.98367 0.92629 0.91070 0.93065 0.87310 0.88212 0.75042 0.87825 0.84887 0.83534 0.81920 0.80579 0.81455 0.92723 0.90117 0.96499 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.43 11.21 21.65 0.24 -54.18 16 2 C -0.05 -2.73 4.90 84.86 0.42 -2.31 16 3 Si 0.96 44.57 29.59 68.60 2.03 46.60 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.26 -14.31 9.54 84.03 0.80 -13.51 16 8 H 0.06 3.34 7.89 -2.91 -0.02 3.32 16 9 N -0.61 -30.10 2.93 -698.92 -2.05 -32.15 16 10 C 0.18 8.33 5.39 86.43 0.47 8.80 16 11 C -0.09 -3.05 5.37 30.78 0.17 -2.89 16 12 C -0.11 -3.50 1.94 -52.17 -0.10 -3.60 16 13 C -0.17 -4.46 9.86 30.55 0.30 -4.15 16 14 C 0.09 2.26 6.14 44.94 0.28 2.53 16 15 H 0.13 3.55 7.40 -2.39 -0.02 3.53 16 16 N -0.69 -15.75 5.35 -442.77 -2.37 -18.12 16 17 C 0.54 13.00 7.61 87.66 0.67 13.67 16 18 O -0.58 -18.08 15.82 -3.01 -0.05 -18.13 16 19 C -0.18 -2.96 5.83 -11.54 -0.07 -3.03 16 20 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 21 C -0.13 -1.77 9.57 30.58 0.29 -1.48 16 22 C -0.08 -1.26 5.57 -11.55 -0.06 -1.32 16 23 H 0.12 2.20 7.67 -2.39 -0.02 2.18 16 24 C -0.11 -1.67 5.62 -19.77 -0.11 -1.78 16 25 C -0.08 -1.04 9.89 22.47 0.22 -0.82 16 26 C -0.17 -1.84 10.11 22.36 0.23 -1.61 16 27 C 0.08 1.09 11.18 84.69 0.95 2.04 16 28 N -0.51 -9.25 10.36 -195.85 -2.03 -11.28 16 29 C 0.09 1.40 10.48 84.67 0.89 2.29 16 30 C -0.09 -2.86 5.83 30.77 0.18 -2.69 16 31 C 0.15 5.96 6.51 86.43 0.56 6.52 16 32 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 34 H 0.06 2.95 5.95 -2.39 -0.01 2.94 16 35 H 0.07 2.05 6.75 -2.39 -0.02 2.03 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.11 2.62 8.14 -2.38 -0.02 2.60 16 38 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.41 8.01 7.12 -92.71 -0.66 7.35 16 40 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.13 1.20 6.20 -2.39 -0.01 1.19 16 42 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.16 0.83 8.06 -2.92 -0.02 0.81 16 44 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.17 2.00 6.04 -2.91 -0.02 1.99 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 2.20 8.10 -2.38 -0.02 2.18 16 48 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.05 2.10 7.92 -2.38 -0.02 2.08 16 Total: -1.00 -70.75 396.60 2.15 -68.60 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.30 Total: 22.02 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 6.07 Total: -3.35 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -6.20 Total: -115.73 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.05 Total: -18.13 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -70.75 2.15 -68.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016840070.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.524 kcal (2) G-P(sol) polarization free energy of solvation -70.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds