Wall clock time and date at job start Wed Apr 1 2020 00:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48495 * 109.47034 * 239.99411 * 3 2 1 5 5 H 1.48494 * 109.47149 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46842 * 119.99603 * 3 2 1 7 7 C 1.38815 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00051 * 195.72064 * 7 2 1 9 9 N 1.36936 * 120.00100 * 15.73146 * 7 2 1 10 10 C 1.47164 * 120.71071 * 25.03760 * 9 7 2 11 11 C 1.53889 * 108.02867 * 132.73631 * 10 9 7 12 12 H 1.09006 * 112.57915 * 182.21878 * 11 10 9 13 13 C 1.54544 * 107.83486 * 306.50419 * 11 10 9 14 14 C 1.54283 * 104.94181 * 89.00930 * 13 11 10 15 15 C 1.54801 * 104.73117 * 0.09142 * 14 13 11 16 16 H 1.08996 * 112.69172 * 146.63432 * 15 14 13 17 17 C 1.47165 * 120.70830 * 205.02521 * 9 7 2 18 18 N 1.48310 * 107.20757 * 58.36466 * 11 10 9 19 19 C 1.34779 * 128.08165 * 106.69713 * 18 11 10 20 20 O 1.21281 * 119.99596 * 0.02562 * 19 18 11 21 21 C 1.50697 * 120.00279 * 180.02562 * 19 18 11 22 22 N 1.46897 * 109.46889 * 173.06091 * 21 19 18 23 23 C 1.47904 * 111.00591 * 283.25261 * 22 21 19 24 24 C 1.54598 * 102.62464 * 265.49112 * 23 22 21 25 25 C 1.51571 * 102.83619 * 334.46072 * 24 23 22 26 26 C 1.37916 * 131.56466 * 196.34771 * 25 24 23 27 27 C 1.38301 * 120.08452 * 179.28706 * 26 25 24 28 28 C 1.38306 * 119.87996 * 359.97438 * 27 26 25 29 29 C 1.37911 * 120.26755 * 0.12298 * 28 27 26 30 30 C 1.38960 * 107.95276 * 15.93629 * 25 24 23 31 31 H 0.97002 * 119.99442 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.74997 * 13.11219 * 10 9 7 33 33 H 1.08998 * 109.75698 * 252.37431 * 10 9 7 34 34 H 1.08996 * 110.36439 * 207.90390 * 13 11 10 35 35 H 1.08997 * 110.36471 * 330.11726 * 13 11 10 36 36 H 1.08998 * 110.36195 * 118.89808 * 14 13 11 37 37 H 1.08992 * 110.36673 * 241.21689 * 14 13 11 38 38 H 1.08999 * 109.74808 * 107.63436 * 17 9 7 39 39 H 1.08997 * 109.79491 * 346.91979 * 17 9 7 40 40 H 1.08997 * 109.47095 * 293.06724 * 21 19 18 41 41 H 1.09003 * 109.46763 * 53.06782 * 21 19 18 42 42 H 1.09005 * 110.77383 * 23.77184 * 23 22 21 43 43 H 1.08995 * 110.78096 * 147.20180 * 23 22 21 44 44 H 1.09004 * 110.73994 * 216.12780 * 24 23 22 45 45 H 1.08997 * 110.89925 * 92.87788 * 24 23 22 46 46 H 1.08001 * 119.95939 * 359.28130 * 26 25 24 47 47 H 1.07999 * 120.06298 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.87077 * 180.14446 * 28 27 26 49 49 H 1.07996 * 119.90130 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0600 -1.2196 0.2540 9 7 1.3640 -2.3660 -0.3205 10 6 0.1609 -2.3486 -1.1678 11 6 0.3239 -3.4317 -2.2487 12 1 -0.5142 -3.4573 -2.9453 13 6 1.6709 -3.1862 -2.9654 14 6 2.7077 -3.9844 -2.1479 15 6 1.8897 -4.6427 -1.0104 16 1 2.2793 -5.6193 -0.7233 17 6 1.8580 -3.6610 0.1743 18 7 0.5102 -4.7258 -1.5486 19 6 -0.3689 -5.7404 -1.4291 20 8 -1.4686 -5.6523 -1.9327 21 6 0.0147 -6.9843 -0.6698 22 7 -1.1573 -7.8604 -0.5413 23 6 -2.0805 -7.3615 0.5009 24 6 -1.6398 -8.1564 1.7515 25 6 -1.0204 -9.4050 1.1558 26 6 -0.7078 -10.6269 1.7137 27 6 -0.1512 -11.6235 0.9329 28 6 0.0911 -11.3929 -0.4091 29 6 -0.2177 -10.1721 -0.9715 30 6 -0.7754 -9.1613 -0.1902 31 1 -0.4849 0.8401 -0.0004 32 1 0.0562 -1.3711 -1.6387 33 1 -0.7196 -2.5624 -0.5619 34 1 1.6287 -3.5569 -3.9895 35 1 1.9172 -2.1245 -2.9568 36 1 3.1753 -4.7474 -2.7701 37 1 3.4626 -3.3149 -1.7357 38 1 1.1896 -4.0389 0.9479 39 1 2.8621 -3.5420 0.5811 40 1 0.8039 -7.5095 -1.2078 41 1 0.3727 -6.7085 0.3222 42 1 -1.9462 -6.2909 0.6560 43 1 -3.1147 -7.5891 0.2426 44 1 -2.5002 -8.4101 2.3707 45 1 -0.9029 -7.5972 2.3279 46 1 -0.8978 -10.8057 2.7617 47 1 0.0931 -12.5804 1.3701 48 1 0.5236 -12.1721 -1.0193 49 1 -0.0264 -9.9986 -2.0201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018281619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:59 Heat of formation + Delta-G solvation = 56.226538 kcal Electronic energy + Delta-G solvation = -30667.560321 eV Core-core repulsion = 26788.919237 eV Total energy + Delta-G solvation = -3878.641084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03681 -39.95920 -37.86490 -36.53689 -34.12159 -32.58435 -31.32981 -31.20130 -30.34040 -29.94026 -29.01346 -26.89452 -25.97739 -23.68756 -23.20836 -22.98155 -21.49034 -21.36274 -20.51183 -19.94919 -18.15730 -17.39355 -16.81393 -16.28015 -16.06278 -15.49022 -15.44997 -15.14680 -14.79918 -14.60479 -14.34501 -13.79066 -13.73290 -13.45082 -13.16683 -13.11330 -12.86993 -12.76167 -12.63280 -12.39984 -12.11980 -12.00201 -11.90055 -11.70230 -11.43105 -11.27105 -11.15474 -11.01114 -10.86327 -10.59374 -10.51205 -10.33067 -10.03499 -9.88743 -9.82455 -9.68811 -9.15252 -8.97034 -8.57772 -8.20066 -7.98631 -6.76041 -5.84256 -3.27110 1.13232 1.21910 3.02056 3.15353 3.33676 3.40181 3.40769 3.56622 3.73067 4.41800 4.43186 4.62452 4.74021 4.83830 4.88166 4.98030 5.05295 5.08371 5.26382 5.27118 5.28628 5.33504 5.35886 5.38321 5.44875 5.53742 5.63203 5.73624 5.77078 5.78680 5.81123 5.99270 6.07786 6.17054 6.19786 6.27730 6.31965 6.33844 6.38116 6.41493 6.56722 6.58520 6.61690 6.70910 6.78257 6.95408 7.15324 7.28395 7.55127 7.70236 8.12543 8.31878 8.63914 9.11494 9.74240 10.30412 11.23531 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020293 B = 0.002826 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.424088 B = 9905.444090 C =10173.967443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.174 3.826 11 C 0.107 3.893 12 H 0.087 0.913 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.106 3.894 16 H 0.083 0.917 17 C 0.138 3.862 18 N -0.608 5.608 19 C 0.529 3.471 20 O -0.533 6.533 21 C 0.047 3.953 22 N -0.474 5.474 23 C 0.059 3.941 24 C -0.114 4.114 25 C -0.137 4.137 26 C -0.090 4.090 27 C -0.135 4.135 28 C -0.105 4.105 29 C -0.112 4.112 30 C 0.095 3.905 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.023 0.977 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.016 0.984 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.125 0.875 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -19.458 0.390 19.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.048 3.952 11 C 0.003 3.997 12 H 0.105 0.895 13 C -0.151 4.151 14 C -0.148 4.148 15 C 0.000 4.000 16 H 0.101 0.899 17 C 0.010 3.990 18 N -0.343 5.343 19 C 0.316 3.684 20 O -0.410 6.410 21 C -0.081 4.081 22 N -0.190 5.190 23 C -0.068 4.068 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.109 4.109 27 C -0.154 4.154 28 C -0.124 4.124 29 C -0.132 4.132 30 C -0.002 4.002 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.034 0.966 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.143 0.857 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.355 -19.240 -0.372 19.291 hybrid contribution 0.775 0.859 0.844 1.432 sum 2.130 -18.381 0.472 18.510 Atomic orbital electron populations 1.70011 1.05212 1.25750 1.53866 1.25018 0.95311 0.98348 1.00908 0.86350 0.78835 0.83359 0.78089 1.20981 1.21652 1.20964 1.19122 0.92198 0.84308 1.42636 0.91401 1.44053 1.30555 1.00878 1.55543 1.21295 0.88288 0.96117 0.89542 1.23232 0.97468 0.83309 0.95708 0.89486 1.22317 0.94298 1.01715 0.96797 1.22320 0.97916 0.98534 0.95996 1.23056 0.81760 0.98728 0.96424 0.89904 1.21436 0.98158 0.87203 0.92167 1.49242 1.14720 1.16577 1.53747 1.19835 0.84350 0.83034 0.81173 1.90683 1.21166 1.80567 1.48544 1.22025 0.92511 0.92940 1.00672 1.59640 1.13830 0.99240 1.46281 1.23142 0.97371 0.99607 0.86692 1.21765 1.00969 0.93428 0.99034 1.21073 1.02380 0.96086 0.94427 1.20397 0.98858 0.91871 0.99738 1.21035 1.00994 0.99117 0.94217 1.20914 0.99809 0.96430 0.95254 1.20538 1.01071 0.91953 0.99628 1.19605 0.97289 0.91041 0.92234 0.93426 0.88717 0.95915 0.93147 0.89573 0.92910 0.89920 0.96572 0.91858 0.88164 0.91183 0.89415 0.88980 0.89453 0.89905 0.86244 0.85879 0.85670 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.44 11.03 55.49 0.61 -24.83 16 2 C 0.00 0.08 4.97 -17.43 -0.09 -0.01 16 3 Si 0.90 20.86 29.58 -169.99 -5.03 15.83 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.25 -6.45 9.66 -15.06 -0.15 -6.60 16 8 H 0.07 1.68 7.86 -52.48 -0.41 1.27 16 9 N -0.59 -13.61 2.29 -171.08 -0.39 -14.00 16 10 C 0.17 4.06 4.61 -3.22 -0.01 4.04 16 11 C 0.11 2.08 4.12 -65.66 -0.27 1.81 16 12 H 0.09 1.74 7.93 -51.93 -0.41 1.33 16 13 C -0.11 -1.93 6.18 -25.25 -0.16 -2.09 16 14 C -0.11 -1.68 6.20 -25.11 -0.16 -1.84 16 15 C 0.11 1.67 3.99 -65.52 -0.26 1.41 16 16 H 0.08 1.06 7.49 -51.93 -0.39 0.68 16 17 C 0.14 2.63 6.01 -3.22 -0.02 2.61 16 18 N -0.61 -10.86 2.75 -152.88 -0.42 -11.28 16 19 C 0.53 9.50 7.40 -10.99 -0.08 9.42 16 20 O -0.53 -11.44 16.41 5.56 0.09 -11.35 16 21 C 0.05 0.67 4.18 -4.98 -0.02 0.65 16 22 N -0.47 -6.84 4.57 -170.38 -0.78 -7.62 16 23 C 0.06 0.78 6.41 -2.43 -0.02 0.77 16 24 C -0.11 -1.24 6.92 -26.61 -0.18 -1.43 16 25 C -0.14 -1.59 6.23 -104.04 -0.65 -2.24 16 26 C -0.09 -0.89 10.03 -39.68 -0.40 -1.28 16 27 C -0.14 -1.20 10.06 -39.53 -0.40 -1.60 16 28 C -0.11 -0.97 10.02 -39.68 -0.40 -1.37 16 29 C -0.11 -1.25 10.05 -39.27 -0.39 -1.65 16 30 C 0.09 1.21 5.48 -83.40 -0.46 0.75 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.09 2.44 6.19 -51.93 -0.32 2.12 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.62 7.84 -51.93 -0.41 1.21 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.33 7.84 -51.93 -0.41 0.93 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 40 H 0.10 1.26 7.94 -51.93 -0.41 0.85 16 41 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 42 H 0.09 1.29 7.39 -51.93 -0.38 0.91 16 43 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 48 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -30.95 384.39 -11.98 -42.94 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.76 Total: 3.17 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: -4.10 Total: 1.35 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.98 Total: -57.73 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.95 -11.98 -42.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018281619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.166 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds