Wall clock time and date at job start Wed Apr 1 2020 01:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86793 * 120.00024 * 2 1 4 4 H 1.48502 * 109.47400 * 270.00430 * 3 2 1 5 5 H 1.48504 * 109.47081 * 29.99783 * 3 2 1 6 6 H 1.48494 * 109.47499 * 149.99793 * 3 2 1 7 7 C 1.38814 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99993 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00230 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00403 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.88928 * 34.61116 * 10 9 7 12 12 C 1.53697 * 109.90381 * 273.54645 * 10 9 7 13 13 C 1.54064 * 106.68041 * 241.64244 * 12 10 9 14 14 C 1.54480 * 104.83886 * 336.66143 * 13 12 10 15 15 H 1.09004 * 113.38425 * 271.78521 * 14 13 12 16 16 C 1.54116 * 108.73206 * 144.68426 * 14 13 12 17 17 N 1.47063 * 107.53135 * 272.43842 * 16 14 13 18 18 C 1.34778 * 125.70685 * 182.01288 * 17 16 14 19 19 O 1.21283 * 120.00062 * 174.95950 * 18 17 16 20 20 C 1.50698 * 120.00113 * 354.95425 * 18 17 16 21 21 C 1.50702 * 115.55132 * 294.28631 * 20 18 17 22 22 C 1.38228 * 119.61801 * 313.78202 * 21 20 18 23 23 C 1.38629 * 119.15793 * 179.75284 * 22 21 20 24 24 C 1.38669 * 118.41842 * 0.50684 * 23 22 21 25 25 C 1.38174 * 119.16691 * 359.73367 * 24 23 22 26 26 N 1.31852 * 119.61563 * 134.05117 * 21 20 18 27 27 C 1.53007 * 117.49640 * 148.61921 * 20 18 17 28 28 C 1.53001 * 117.49752 * 79.95760 * 20 18 17 29 29 C 1.47392 * 108.58343 * 2.00368 * 17 16 14 30 30 C 1.53673 * 109.99276 * 155.69704 * 10 9 7 31 31 H 1.08998 * 114.01622 * 265.16321 * 30 10 9 32 32 H 0.96994 * 120.00083 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00018 * 359.97438 * 9 7 2 34 34 H 1.08992 * 110.01989 * 122.33103 * 12 10 9 35 35 H 1.09004 * 110.05502 * 0.96620 * 12 10 9 36 36 H 1.09009 * 110.36386 * 217.82305 * 13 12 10 37 37 H 1.08995 * 110.46156 * 95.55405 * 13 12 10 38 38 H 1.09002 * 109.83913 * 152.93765 * 16 14 13 39 39 H 1.08999 * 109.92353 * 31.98238 * 16 14 13 40 40 H 1.07995 * 120.41792 * 359.97438 * 22 21 20 41 41 H 1.08002 * 120.78724 * 180.21176 * 23 22 21 42 42 H 1.08011 * 120.41346 * 179.75568 * 24 23 22 43 43 H 1.08001 * 119.62169 * 180.02562 * 25 24 23 44 44 H 1.08995 * 117.50003 * 0.02562 * 27 20 18 45 45 H 1.08998 * 117.49648 * 145.02385 * 27 20 18 46 46 H 1.08996 * 117.49887 * 214.97397 * 28 20 18 47 47 H 1.08995 * 117.49864 * 359.97438 * 28 20 18 48 48 H 1.09002 * 110.32407 * 93.95232 * 29 17 16 49 49 H 1.08995 * 110.33191 * 216.06759 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 1 3.5673 -3.2137 -0.5826 12 6 4.2959 -2.9690 1.4423 13 6 5.8137 -3.0275 1.7001 14 6 6.4486 -3.1528 0.2974 15 1 6.5484 -4.1839 -0.0418 16 6 7.7781 -2.3733 0.2844 17 7 7.4713 -0.9803 -0.0733 18 6 8.3734 0.0092 -0.2274 19 8 8.0152 1.1017 -0.6137 20 6 9.8271 -0.2418 0.0803 21 6 10.1462 -0.5245 1.5257 22 6 9.6028 0.2745 2.5142 23 6 9.8985 0.0027 3.8410 24 6 10.7420 -1.0607 4.1247 25 6 11.2517 -1.8123 3.0833 26 7 10.9447 -1.5278 1.8326 27 6 10.8655 0.5326 -0.7340 28 6 10.6594 -0.9640 -0.9812 29 6 6.0124 -0.8472 -0.2353 30 6 5.5150 -2.2676 -0.5938 31 1 5.5834 -2.4943 -1.6577 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 0.0004 34 1 3.8602 -3.9619 1.5525 35 1 3.8255 -2.2760 2.1399 36 1 6.0620 -3.8976 2.3080 37 1 6.1525 -2.1145 2.1897 38 1 8.4529 -2.8052 -0.4546 39 1 8.2391 -2.4089 1.2715 40 1 8.9532 1.0978 2.2562 41 1 9.4856 0.6079 4.6346 42 1 10.9970 -1.2987 5.1469 43 1 11.9090 -2.6425 3.2959 44 1 10.4972 1.2239 -1.4919 45 1 11.7796 0.8372 -0.2243 46 1 11.4380 -1.6432 -0.6341 47 1 10.1554 -1.2579 -1.9019 48 1 5.5572 -0.5104 0.6961 49 1 5.7829 -0.1508 -1.0417 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026267939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:37 Heat of formation + Delta-G solvation = 56.647614 kcal Electronic energy + Delta-G solvation = -30835.119092 eV Core-core repulsion = 26956.496267 eV Total energy + Delta-G solvation = -3878.622825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.16274 -40.21193 -38.87992 -36.52472 -35.26782 -33.33956 -32.69957 -31.37064 -31.25576 -29.48352 -28.75380 -26.18018 -25.17973 -23.88581 -23.70316 -22.88611 -22.51474 -21.76859 -19.77893 -19.21336 -18.97688 -17.97923 -17.51513 -16.72742 -16.43162 -16.04707 -15.85016 -15.41729 -15.09541 -14.72907 -14.49568 -14.24882 -14.08249 -13.69255 -13.39418 -13.37987 -13.05756 -12.78823 -12.65125 -12.46218 -12.38964 -12.07754 -12.06245 -11.74941 -11.54775 -11.06702 -10.94348 -10.88183 -10.72750 -10.62397 -10.43459 -10.38973 -10.33493 -10.15892 -9.95101 -9.80504 -9.72609 -9.56698 -9.17557 -8.93359 -8.58541 -7.28024 -5.77761 -3.13653 0.74962 0.96951 2.43814 2.85777 3.27682 3.39340 3.43396 3.48390 3.69960 3.84409 4.23937 4.32609 4.46124 4.55034 4.59319 4.65744 4.66421 4.71977 4.80038 4.85468 4.95383 5.13342 5.31511 5.34161 5.38249 5.39208 5.41560 5.44774 5.51489 5.54420 5.58031 5.63301 5.76079 5.78733 5.81696 5.85746 5.90842 5.91958 5.93280 6.06880 6.20861 6.26503 6.35715 6.36379 6.42346 6.52567 6.71427 6.97466 7.51111 7.65096 7.98549 8.11644 8.41401 9.19254 9.92202 10.10633 11.40464 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013613 B = 0.003548 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.399727 B = 7889.765516 C = 8248.766501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.008 3.992 3 Si 0.877 3.123 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.189 3.811 11 H 0.063 0.937 12 C -0.143 4.143 13 C -0.115 4.115 14 C -0.101 4.101 15 H 0.103 0.897 16 C 0.112 3.888 17 N -0.606 5.606 18 C 0.567 3.433 19 O -0.532 6.532 20 C -0.117 4.117 21 C 0.174 3.826 22 C -0.157 4.157 23 C -0.070 4.070 24 C -0.175 4.175 25 C 0.101 3.899 26 N -0.475 5.475 27 C -0.130 4.130 28 C -0.136 4.136 29 C 0.109 3.891 30 C -0.105 4.105 31 H 0.094 0.906 32 H 0.260 0.740 33 H 0.362 0.638 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.079 0.921 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.306 -6.414 5.357 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.394 5.394 10 C 0.079 3.921 11 H 0.081 0.919 12 C -0.184 4.184 13 C -0.153 4.153 14 C -0.120 4.120 15 H 0.122 0.878 16 C -0.011 4.011 17 N -0.339 5.339 18 C 0.354 3.646 19 O -0.409 6.409 20 C -0.121 4.121 21 C 0.036 3.964 22 C -0.177 4.177 23 C -0.095 4.095 24 C -0.195 4.195 25 C -0.056 4.056 26 N -0.184 5.184 27 C -0.168 4.168 28 C -0.173 4.173 29 C -0.012 4.012 30 C -0.125 4.125 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.197 0.803 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.128 0.872 45 H 0.121 0.879 46 H 0.135 0.865 47 H 0.119 0.881 48 H 0.097 0.903 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.233 -6.310 4.478 27.350 hybrid contribution 0.092 1.759 1.012 2.032 sum 26.325 -4.551 5.490 27.273 Atomic orbital electron populations 1.69692 1.05066 1.25827 1.57463 1.24638 0.95171 0.97059 1.01945 0.86684 0.79241 0.85268 0.78112 1.20859 1.21614 1.20375 1.19079 0.80580 0.94697 1.43102 0.89077 1.43061 1.04123 1.01946 1.90222 1.20582 0.89004 0.89443 0.93104 0.91864 1.22877 0.93945 1.01258 1.00311 1.22324 0.96854 1.00983 0.95150 1.23116 0.93017 0.98890 0.97023 0.87850 1.22002 0.97645 0.81231 1.00194 1.48449 1.07473 1.09720 1.68238 1.18805 0.84955 0.83305 0.77540 1.90736 1.80082 1.23647 1.46413 1.19887 0.91308 1.10864 0.90075 1.19713 0.93060 0.91021 0.92573 1.21955 1.01313 1.01083 0.93373 1.21608 0.95255 0.96210 0.96475 1.22163 0.99229 0.97010 1.01101 1.22722 0.97213 0.98264 0.87377 1.67327 1.13117 1.16103 1.21879 1.23070 0.97656 0.95286 1.00827 1.23058 1.01240 0.95534 0.97486 1.22367 0.78143 0.98334 1.02404 1.23357 0.96228 0.93321 0.99610 0.88725 0.93040 0.80279 0.92465 0.90716 0.92188 0.92159 0.91497 0.91842 0.84855 0.84594 0.84664 0.82508 0.87154 0.87945 0.86489 0.88128 0.90314 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.70 27.73 -169.99 -4.71 17.98 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 6 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 7 C -0.24 -6.80 10.43 -15.06 -0.16 -6.96 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.75 -17.32 4.59 -52.73 -0.24 -17.56 16 10 C 0.19 3.43 3.20 -67.22 -0.22 3.22 16 11 H 0.06 1.18 8.09 -51.93 -0.42 0.76 16 12 C -0.14 -2.34 6.52 -25.81 -0.17 -2.51 16 13 C -0.12 -1.52 5.58 -25.40 -0.14 -1.66 16 14 C -0.10 -1.22 4.16 -87.37 -0.36 -1.58 16 15 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 16 C 0.11 1.34 5.58 -3.15 -0.02 1.32 16 17 N -0.61 -8.91 3.33 -170.77 -0.57 -9.48 16 18 C 0.57 8.76 6.50 -10.99 -0.07 8.69 16 19 O -0.53 -10.18 16.92 5.55 0.09 -10.08 16 20 C -0.12 -1.42 1.59 -156.81 -0.25 -1.66 16 21 C 0.17 2.00 5.16 -82.59 -0.43 1.58 16 22 C -0.16 -1.79 9.40 -39.44 -0.37 -2.16 16 23 C -0.07 -0.63 10.18 -39.28 -0.40 -1.03 16 24 C -0.18 -1.33 10.11 -39.45 -0.40 -1.73 16 25 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 26 N -0.48 -4.96 9.36 -9.47 -0.09 -5.05 16 27 C -0.13 -1.35 9.76 -26.68 -0.26 -1.61 16 28 C -0.14 -1.33 9.73 -26.69 -0.26 -1.59 16 29 C 0.11 1.85 4.42 -2.66 -0.01 1.84 16 30 C -0.11 -1.59 4.13 -87.48 -0.36 -1.95 16 31 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.26 7.80 8.31 -40.82 -0.34 7.47 16 33 H 0.36 8.44 3.18 -40.82 -0.13 8.31 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.42 7.91 -51.93 -0.41 1.00 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.86 7.34 -51.93 -0.38 0.48 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.77 7.06 -51.93 -0.37 0.40 16 40 H 0.13 1.65 7.85 -52.49 -0.41 1.24 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 43 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.11 1.20 8.00 -51.93 -0.42 0.79 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.12 1.05 7.59 -51.93 -0.39 0.66 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 49 H 0.08 1.49 7.93 -51.93 -0.41 1.07 16 LS Contribution 388.52 15.07 5.85 5.85 Total: -1.00 -33.62 388.52 -10.54 -44.16 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.49 Total: 9.73 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -4.16 Total: -7.01 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.12 Total: -60.64 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.71 Total: 17.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.62 -10.54 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026267939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.811 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds