Wall clock time and date at job start Wed Apr 1 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00024 * 2 1 4 4 H 1.48505 * 109.47191 * 269.99587 * 3 2 1 5 5 H 1.48492 * 109.47171 * 29.99844 * 3 2 1 6 6 H 1.48494 * 109.47089 * 150.00076 * 3 2 1 7 7 C 1.38810 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99971 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00155 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00303 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.54161 * 32.36814 * 10 9 7 12 12 C 1.55943 * 110.49357 * 269.73719 * 10 9 7 13 13 C 1.56395 * 105.79109 * 233.78670 * 12 10 9 14 14 C 1.51009 * 101.59809 * 334.98727 * 13 12 10 15 15 H 1.09006 * 110.05473 * 290.63215 * 14 13 12 16 16 C 1.50269 * 125.69383 * 156.23372 * 14 13 12 17 17 N 1.49219 * 104.90244 * 215.88357 * 16 14 13 18 18 C 1.34776 * 126.06157 * 186.92123 * 17 16 14 19 19 O 1.21276 * 119.99918 * 184.75273 * 18 17 16 20 20 C 1.50696 * 119.99676 * 4.75453 * 18 17 16 21 21 C 1.50706 * 115.55436 * 80.17477 * 20 18 17 22 22 C 1.38228 * 119.61101 * 20.21997 * 21 20 18 23 23 C 1.38628 * 119.15608 * 179.97438 * 22 21 20 24 24 C 1.38674 * 118.42455 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.15903 * 0.02562 * 24 23 22 26 26 N 1.31844 * 119.61944 * 199.94684 * 21 20 18 27 27 C 1.53002 * 117.50149 * 294.50256 * 20 18 17 28 28 C 1.53001 * 60.03335 * 252.47960 * 27 20 18 29 29 C 1.49703 * 107.88055 * 6.65437 * 17 16 14 30 30 C 1.50283 * 110.49546 * 155.00172 * 10 9 7 31 31 H 1.09001 * 109.99526 * 39.09634 * 30 10 9 32 32 H 0.97004 * 119.99912 * 0.02562 * 1 2 3 33 33 H 0.96996 * 120.00346 * 0.02562 * 9 7 2 34 34 H 1.08993 * 110.18536 * 352.86904 * 12 10 9 35 35 H 1.09007 * 110.18450 * 114.63558 * 12 10 9 36 36 H 1.09001 * 110.99898 * 93.06133 * 13 12 10 37 37 H 1.08999 * 111.00373 * 216.90915 * 13 12 10 38 38 H 1.09001 * 110.46589 * 96.96389 * 16 14 13 39 39 H 1.09001 * 110.22481 * 334.67731 * 16 14 13 40 40 H 1.07993 * 120.42751 * 0.02562 * 22 21 20 41 41 H 1.08004 * 120.79173 * 179.97438 * 23 22 21 42 42 H 1.07993 * 120.42422 * 180.02562 * 24 23 22 43 43 H 1.08009 * 119.61816 * 180.02562 * 25 24 23 44 44 H 1.09007 * 117.49388 * 359.97438 * 27 20 18 45 45 H 1.09000 * 117.50190 * 144.97351 * 27 20 18 46 46 H 1.09002 * 117.50069 * 107.50205 * 28 27 20 47 47 H 1.08998 * 117.49653 * 252.52148 * 28 27 20 48 48 H 1.08997 * 110.84190 * 143.59864 * 29 17 16 49 49 H 1.09003 * 110.84741 * 267.21265 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9959 -3.5570 0.5459 12 6 2.3252 -4.1330 -1.4613 13 6 1.7641 -5.5906 -1.5431 14 6 1.8376 -6.0257 -0.0989 15 1 2.8782 -6.1446 0.2032 16 6 1.0050 -7.1039 0.5354 17 7 0.7399 -6.6187 1.9213 18 6 0.1391 -7.3171 2.9051 19 8 -0.0989 -6.7847 3.9685 20 6 -0.2368 -8.7595 2.6837 21 6 0.8856 -9.7541 2.8330 22 6 2.0193 -9.4033 3.5417 23 6 3.0457 -10.3257 3.6736 24 6 2.8926 -11.5722 3.0856 25 6 1.7304 -11.8513 2.3921 26 7 0.7724 -10.9505 2.2907 27 6 -1.3092 -9.0570 1.6337 28 6 -1.6355 -9.2014 3.1215 29 6 1.2653 -5.2209 2.0274 30 6 1.2162 -4.7504 0.5943 31 1 0.1802 -4.6393 0.2741 32 1 -0.4850 0.8401 -0.0004 33 1 0.3556 -2.3881 -0.0005 34 1 1.8028 -3.4887 -2.1683 35 1 3.3953 -4.1285 -1.6685 36 1 0.7342 -5.5932 -1.8999 37 1 2.3956 -6.2175 -2.1725 38 1 1.5553 -8.0445 0.5617 39 1 0.0687 -7.2264 -0.0091 40 1 2.1041 -8.4234 3.9877 41 1 3.9434 -10.0794 4.2213 42 1 3.6717 -12.3154 3.1685 43 1 1.6032 -12.8200 1.9316 44 1 -1.7431 -8.2092 1.1034 45 1 -1.2027 -9.9717 1.0506 46 1 -2.2840 -8.4488 3.5700 47 1 -1.7432 -10.2112 3.5174 48 1 0.6193 -4.6106 2.6584 49 1 2.2891 -5.2187 2.4015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026267940.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:40 Heat of formation + Delta-G solvation = 62.585415 kcal Electronic energy + Delta-G solvation = -30000.894219 eV Core-core repulsion = 26122.528876 eV Total energy + Delta-G solvation = -3878.365343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13816 -40.23638 -38.87635 -36.56171 -35.32418 -33.39510 -32.69542 -31.40008 -30.93266 -29.65185 -28.50858 -25.79052 -25.20078 -23.84325 -23.46684 -23.02550 -22.58018 -21.62485 -20.21302 -19.23761 -19.01464 -17.65855 -17.05580 -16.67078 -16.40657 -16.28278 -15.70925 -15.30038 -14.89637 -14.75351 -14.41712 -14.26245 -13.97631 -13.85167 -13.69504 -13.40108 -13.10598 -12.87952 -12.69442 -12.32368 -12.10465 -11.89501 -11.69427 -11.58641 -11.46469 -11.16966 -11.01762 -10.94294 -10.80007 -10.76666 -10.45146 -10.16740 -10.16201 -10.13083 -9.88303 -9.78565 -9.70265 -9.56671 -9.12635 -8.92747 -8.64839 -6.98647 -5.78377 -3.07626 0.74749 0.95943 2.47367 2.75038 3.23905 3.42562 3.47980 3.49690 3.78056 3.86560 4.07554 4.23331 4.43359 4.53671 4.56914 4.70835 4.72990 4.78503 4.86028 4.94055 5.05296 5.16340 5.25490 5.36736 5.39393 5.43771 5.48724 5.51564 5.55407 5.58048 5.68361 5.74013 5.80340 5.85936 5.90008 5.92011 5.95502 5.97224 6.03649 6.11246 6.19505 6.32625 6.34367 6.35795 6.48426 6.62383 6.76785 7.03693 7.48481 7.64474 7.68977 8.11030 8.39733 9.51131 10.07710 10.42147 11.44023 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018373 B = 0.002590 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.589560 B =10808.388677 C =11117.438802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.197 3.803 11 H 0.056 0.944 12 C -0.144 4.144 13 C -0.096 4.096 14 C -0.130 4.130 15 H 0.079 0.921 16 C 0.126 3.874 17 N -0.616 5.616 18 C 0.570 3.430 19 O -0.533 6.533 20 C -0.118 4.118 21 C 0.180 3.820 22 C -0.160 4.160 23 C -0.069 4.069 24 C -0.179 4.179 25 C 0.104 3.896 26 N -0.480 5.480 27 C -0.139 4.139 28 C -0.126 4.126 29 C 0.129 3.871 30 C -0.117 4.117 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.158 0.842 44 H 0.102 0.898 45 H 0.116 0.884 46 H 0.107 0.893 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -25.908 2.361 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.086 3.914 11 H 0.074 0.926 12 C -0.185 4.185 13 C -0.135 4.135 14 C -0.150 4.150 15 H 0.098 0.902 16 C 0.004 3.996 17 N -0.350 5.350 18 C 0.356 3.644 19 O -0.409 6.409 20 C -0.123 4.123 21 C 0.042 3.958 22 C -0.180 4.180 23 C -0.095 4.095 24 C -0.199 4.199 25 C -0.053 4.053 26 N -0.189 5.189 27 C -0.177 4.177 28 C -0.164 4.164 29 C 0.008 3.992 30 C -0.137 4.137 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.175 0.825 44 H 0.120 0.880 45 H 0.135 0.865 46 H 0.125 0.875 47 H 0.123 0.877 48 H 0.103 0.897 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.716 -25.701 2.582 25.973 hybrid contribution 1.121 1.086 0.420 1.616 sum 3.837 -24.615 3.003 25.093 Atomic orbital electron populations 1.69660 1.05115 1.25707 1.57497 1.24746 0.95492 0.97709 1.02893 0.86210 0.78684 0.83930 0.77479 1.21746 1.21796 1.20760 1.19237 0.90986 0.84092 1.42880 0.91154 1.42488 1.05699 0.99649 1.88133 1.20077 0.94122 0.85002 0.92240 0.92598 1.23810 0.99958 0.93928 1.00761 1.21734 1.01257 0.97186 0.93280 1.22172 0.99826 0.95179 0.97797 0.90245 1.21225 0.99661 0.96753 0.81943 1.49799 1.58031 1.15545 1.11649 1.18776 0.77092 0.85620 0.82912 1.90730 1.54066 1.70567 1.25568 1.19927 0.90401 0.91129 1.10794 1.19691 0.92248 0.90770 0.93076 1.21941 0.94416 1.01368 1.00266 1.21594 0.98396 0.92950 0.96522 1.22147 0.99754 0.97909 1.00052 1.22711 0.89072 0.98073 0.95492 1.67258 1.30880 1.01560 1.19195 1.23132 0.98089 1.04243 0.92205 1.23048 0.92644 1.03072 0.97604 1.21545 0.99301 0.80685 0.97659 1.22517 1.01753 0.95700 0.93701 0.90009 0.93479 0.78142 0.90732 0.92677 0.91560 0.92205 0.91544 0.91130 0.84927 0.84618 0.84680 0.82509 0.88000 0.86542 0.87512 0.87653 0.89663 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.87 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.34 5.10 -53.21 -0.27 -17.61 16 10 C 0.20 3.66 3.41 -67.71 -0.23 3.43 16 11 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 12 C -0.14 -2.32 6.74 -23.33 -0.16 -2.48 16 13 C -0.10 -1.22 6.72 -25.91 -0.17 -1.39 16 14 C -0.13 -1.63 2.76 -90.30 -0.25 -1.88 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.13 1.48 5.95 -3.89 -0.02 1.45 16 17 N -0.62 -8.58 3.42 -171.60 -0.59 -9.17 16 18 C 0.57 8.44 5.58 -10.99 -0.06 8.38 16 19 O -0.53 -9.80 17.31 5.56 0.10 -9.70 16 20 C -0.12 -1.43 1.77 -156.77 -0.28 -1.70 16 21 C 0.18 2.08 6.38 -82.59 -0.53 1.55 16 22 C -0.16 -1.78 9.36 -39.44 -0.37 -2.15 16 23 C -0.07 -0.59 10.18 -39.28 -0.40 -0.99 16 24 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 25 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 26 N -0.48 -5.06 9.37 -9.47 -0.09 -5.15 16 27 C -0.14 -1.40 8.91 -26.73 -0.24 -1.63 16 28 C -0.13 -1.34 9.85 -26.69 -0.26 -1.61 16 29 C 0.13 2.00 6.83 -3.31 -0.02 1.97 16 30 C -0.12 -1.83 2.42 -90.34 -0.22 -2.05 16 31 H 0.08 1.40 7.93 -51.93 -0.41 0.99 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.38 9.97 7.69 -40.82 -0.31 9.66 16 34 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 40 H 0.13 1.62 7.08 -52.49 -0.37 1.25 16 41 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 42 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.16 0.82 8.06 -52.48 -0.42 0.39 16 44 H 0.10 1.00 7.95 -51.92 -0.41 0.59 16 45 H 0.12 1.09 7.62 -51.93 -0.40 0.69 16 46 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 1.50 8.06 -51.93 -0.42 1.09 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 398.28 15.07 6.00 6.00 Total: -1.00 -32.05 398.28 -10.96 -43.01 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.75 Total: 9.86 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -4.05 Total: -7.26 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.22 Total: -59.07 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.10 Total: -9.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.05 -10.96 -43.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026267940.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.593 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds