Wall clock time and date at job start Wed Apr 1 2020 00:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00123 * 2 1 4 4 H 1.48502 * 109.47413 * 270.00834 * 3 2 1 5 5 H 1.48502 * 109.46682 * 30.00793 * 3 2 1 6 6 H 1.48498 * 109.47133 * 150.00259 * 3 2 1 7 7 C 1.38813 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99625 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99803 * 179.97438 * 9 7 2 11 11 H 1.09010 * 110.44022 * 32.44418 * 10 9 7 12 12 C 1.55935 * 110.49913 * 269.73695 * 10 9 7 13 13 C 1.56397 * 105.79124 * 233.79420 * 12 10 9 14 14 C 1.51002 * 101.59641 * 334.97977 * 13 12 10 15 15 H 1.09004 * 110.05740 * 290.63571 * 14 13 12 16 16 C 1.50273 * 125.69317 * 156.23295 * 14 13 12 17 17 N 1.49210 * 104.90224 * 215.88238 * 16 14 13 18 18 C 1.34775 * 126.05698 * 186.91942 * 17 16 14 19 19 O 1.21563 * 120.00134 * 185.43387 * 18 17 16 20 20 C 1.47842 * 120.00412 * 5.44159 * 18 17 16 21 21 C 1.40028 * 120.55289 * 315.05006 * 20 18 17 22 22 C 1.38358 * 118.28396 * 179.97438 * 21 20 18 23 23 C 1.38350 * 119.30556 * 0.02562 * 22 21 20 24 24 N 1.31925 * 121.08114 * 359.97438 * 23 22 21 25 25 C 1.31696 * 121.87849 * 359.97438 * 24 23 22 26 26 C 1.50698 * 119.71652 * 180.27764 * 25 24 23 27 27 C 1.53003 * 117.50142 * 2.00642 * 26 25 24 28 28 C 1.52999 * 60.00276 * 252.51451 * 27 26 25 29 29 C 1.49692 * 107.88430 * 6.66084 * 17 16 14 30 30 C 1.50293 * 110.49252 * 154.99835 * 10 9 7 31 31 H 1.09003 * 109.98959 * 39.09892 * 30 10 9 32 32 H 0.97009 * 120.00134 * 359.97438 * 1 2 3 33 33 H 0.96994 * 120.00119 * 0.02562 * 9 7 2 34 34 H 1.09006 * 110.18203 * 352.87109 * 12 10 9 35 35 H 1.09003 * 110.18968 * 114.71027 * 12 10 9 36 36 H 1.08998 * 111.00699 * 93.05911 * 13 12 10 37 37 H 1.09007 * 111.00171 * 216.90373 * 13 12 10 38 38 H 1.09000 * 110.45706 * 96.96616 * 16 14 13 39 39 H 1.08999 * 110.22525 * 334.68456 * 16 14 13 40 40 H 1.07997 * 120.85561 * 0.02562 * 21 20 18 41 41 H 1.08007 * 120.34693 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.45895 * 180.02562 * 23 22 21 43 43 H 1.08994 * 115.55382 * 147.71990 * 26 25 24 44 44 H 1.09003 * 117.49306 * 0.02562 * 27 26 25 45 45 H 1.08996 * 117.50248 * 145.01958 * 27 26 25 46 46 H 1.09001 * 117.49546 * 252.51181 * 28 27 26 47 47 H 1.08998 * 117.51901 * 107.47956 * 28 27 26 48 48 H 1.09002 * 110.84969 * 143.59514 * 29 17 16 49 49 H 1.08996 * 110.84900 * 267.00551 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9953 -3.5557 0.5456 12 6 2.3241 -4.1324 -1.4627 13 6 1.7629 -5.5899 -1.5447 14 6 1.8375 -6.0256 -0.1008 15 1 2.8783 -6.1446 0.2004 16 6 1.0054 -7.1041 0.5337 17 7 0.7414 -6.6194 1.9200 18 6 0.1414 -7.3183 2.9039 19 8 -0.1075 -6.7817 3.9659 20 6 -0.2140 -8.7376 2.6918 21 6 -0.8275 -9.1475 1.5016 22 6 -1.1393 -10.4872 1.3525 23 6 -0.8384 -11.3703 2.3740 24 7 -0.2600 -10.9554 3.4847 25 6 0.0570 -9.6912 3.6734 26 6 0.7224 -9.2717 4.9589 27 6 1.0428 -10.3665 5.9785 28 6 -0.0965 -9.3812 6.2467 29 6 1.2668 -5.2218 2.0263 30 6 1.2165 -4.7507 0.5935 31 1 0.1803 -4.6394 0.2740 32 1 -0.4851 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 1.8011 -3.4877 -2.1692 35 1 3.3941 -4.1291 -1.6704 36 1 0.7327 -5.5925 -1.9007 37 1 2.3939 -6.2166 -2.1749 38 1 1.5557 -8.0446 0.5591 39 1 0.0687 -7.2263 -0.0101 40 1 -1.0508 -8.4364 0.7201 41 1 -1.6133 -10.8398 0.4483 42 1 -1.0803 -12.4168 2.2600 43 1 1.4219 -8.4399 4.8765 44 1 0.7727 -11.3902 5.7194 45 1 1.9535 -10.2552 6.5671 46 1 0.0646 -8.6216 7.0117 47 1 -1.1166 -9.7563 6.1641 48 1 0.6213 -4.6116 2.6581 49 1 2.2897 -5.2194 2.4029 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026305225.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:08 Heat of formation + Delta-G solvation = 62.717168 kcal Electronic energy + Delta-G solvation = -29682.982368 eV Core-core repulsion = 25804.622739 eV Total energy + Delta-G solvation = -3878.359629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.16666 -40.18941 -38.37882 -37.05508 -35.37600 -33.50062 -32.87320 -31.51693 -30.96191 -29.42613 -28.57596 -25.65547 -24.88895 -24.79628 -23.21709 -22.74276 -22.35954 -21.09591 -20.24452 -19.78079 -19.19069 -17.46884 -17.28203 -17.01389 -16.65354 -16.26579 -15.59303 -15.10863 -14.99664 -14.75967 -14.49071 -14.18171 -13.98241 -13.83481 -13.65879 -13.49721 -13.10464 -12.91014 -12.72236 -12.26096 -11.95821 -11.87256 -11.62882 -11.59758 -11.48233 -11.12854 -10.96217 -10.81672 -10.80752 -10.60988 -10.51356 -10.24251 -10.18916 -10.15859 -10.09238 -9.82863 -9.64918 -9.54831 -9.11957 -8.94422 -8.68245 -7.00480 -5.79877 -3.09251 0.49240 0.86484 2.61589 2.77966 3.34016 3.41661 3.47198 3.48847 3.81400 3.89427 4.01673 4.25354 4.43305 4.44836 4.55395 4.70527 4.78833 4.83760 4.93017 4.96771 5.00010 5.15369 5.19444 5.30727 5.31902 5.37472 5.50936 5.53151 5.55647 5.66093 5.68964 5.72715 5.76983 5.80792 5.88551 5.92591 5.98539 5.98684 6.07001 6.08101 6.13761 6.27204 6.29652 6.31239 6.45306 6.58339 6.73919 7.00919 7.41006 7.61510 7.67697 8.05934 8.38155 9.49631 10.05908 10.40229 11.42479 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.002537 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.415479 B =11031.983662 C =11961.837857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.720 5.720 10 C 0.197 3.803 11 H 0.057 0.943 12 C -0.144 4.144 13 C -0.096 4.096 14 C -0.131 4.131 15 H 0.082 0.918 16 C 0.120 3.880 17 N -0.619 5.619 18 C 0.577 3.423 19 O -0.523 6.523 20 C -0.167 4.167 21 C -0.044 4.044 22 C -0.184 4.184 23 C 0.119 3.881 24 N -0.485 5.485 25 C 0.210 3.790 26 C -0.115 4.115 27 C -0.162 4.162 28 C -0.147 4.147 29 C 0.130 3.870 30 C -0.117 4.117 31 H 0.081 0.919 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -24.986 2.144 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.085 3.915 11 H 0.075 0.925 12 C -0.185 4.185 13 C -0.135 4.135 14 C -0.151 4.151 15 H 0.100 0.900 16 C -0.002 4.002 17 N -0.354 5.354 18 C 0.364 3.636 19 O -0.399 6.399 20 C -0.173 4.173 21 C -0.070 4.070 22 C -0.204 4.204 23 C -0.038 4.038 24 N -0.193 5.193 25 C 0.072 3.928 26 C -0.134 4.134 27 C -0.199 4.199 28 C -0.184 4.184 29 C 0.009 3.991 30 C -0.137 4.137 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.218 0.782 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.177 0.823 43 H 0.139 0.861 44 H 0.125 0.875 45 H 0.114 0.886 46 H 0.119 0.881 47 H 0.111 0.889 48 H 0.104 0.896 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.641 -25.171 3.473 25.418 hybrid contribution -0.156 1.539 -1.024 1.855 sum 0.485 -23.633 2.449 23.764 Atomic orbital electron populations 1.69658 1.05126 1.25729 1.57455 1.24748 0.95492 0.97725 1.02847 0.86210 0.78699 0.83906 0.77484 1.21739 1.21786 1.20737 1.19238 0.90995 0.84076 1.42946 0.91130 1.42488 1.05694 0.99654 1.88139 1.20085 0.94168 0.84996 0.92228 0.92516 1.23812 1.00010 0.93868 1.00767 1.21739 1.01238 0.97283 0.93205 1.22181 0.99954 0.95089 0.97849 0.90010 1.21378 0.99459 0.97230 0.82149 1.49790 1.58392 1.15772 1.11413 1.17653 0.77725 0.85020 0.83171 1.90828 1.53384 1.70271 1.25444 1.20698 1.05180 0.94869 0.96505 1.21909 0.93217 0.96478 0.95433 1.22092 1.03090 0.93791 1.01400 1.22921 0.92252 1.00363 0.88248 1.67447 1.12383 1.16378 1.23131 1.20383 0.91786 0.87532 0.93083 1.20880 1.03715 1.02002 0.86828 1.22993 0.99749 0.96200 1.00985 1.22861 0.96694 1.02027 0.96867 1.21536 0.99435 0.80434 0.97647 1.22529 1.01743 0.95708 0.93697 0.90028 0.93469 0.78156 0.90708 0.92615 0.91604 0.92135 0.91180 0.91283 0.83930 0.84078 0.82252 0.86102 0.87468 0.88623 0.88110 0.88880 0.89576 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.47 9.96 -15.06 -0.15 -6.62 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.15 5.10 -53.21 -0.27 -17.42 16 10 C 0.20 3.58 3.41 -67.71 -0.23 3.35 16 11 H 0.06 1.06 8.09 -51.92 -0.42 0.64 16 12 C -0.14 -2.26 6.73 -23.34 -0.16 -2.42 16 13 C -0.10 -1.16 6.72 -25.91 -0.17 -1.33 16 14 C -0.13 -1.55 2.76 -90.30 -0.25 -1.80 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 16 C 0.12 1.28 5.25 -3.90 -0.02 1.26 16 17 N -0.62 -8.40 3.42 -172.73 -0.59 -8.99 16 18 C 0.58 8.54 6.80 -12.33 -0.08 8.46 16 19 O -0.52 -9.43 15.80 5.31 0.08 -9.35 16 20 C -0.17 -2.08 5.49 -104.82 -0.58 -2.66 16 21 C -0.04 -0.43 8.63 -38.87 -0.34 -0.76 16 22 C -0.18 -1.40 10.10 -39.50 -0.40 -1.79 16 23 C 0.12 1.00 11.17 -17.47 -0.20 0.80 16 24 N -0.48 -5.40 9.28 -9.15 -0.08 -5.48 16 25 C 0.21 2.61 6.49 -82.17 -0.53 2.08 16 26 C -0.12 -1.40 4.74 -91.77 -0.43 -1.83 16 27 C -0.16 -1.60 10.02 -26.73 -0.27 -1.87 16 28 C -0.15 -1.60 10.23 -26.73 -0.27 -1.88 16 29 C 0.13 1.97 6.83 -3.31 -0.02 1.95 16 30 C -0.12 -1.78 2.42 -90.34 -0.22 -2.00 16 31 H 0.08 1.36 7.93 -51.93 -0.41 0.95 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.38 9.87 7.69 -40.82 -0.31 9.55 16 34 H 0.07 1.36 7.98 -51.93 -0.41 0.94 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.07 0.65 6.44 -51.93 -0.33 0.32 16 40 H 0.14 1.17 5.94 -52.49 -0.31 0.86 16 41 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 42 H 0.16 0.81 8.06 -52.48 -0.42 0.39 16 43 H 0.12 1.59 7.16 -51.93 -0.37 1.22 16 44 H 0.11 1.06 7.54 -51.93 -0.39 0.67 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.09 1.49 8.05 -51.93 -0.42 1.08 16 49 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 393.07 15.07 5.92 5.92 Total: -1.00 -31.98 393.07 -11.24 -43.22 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.58 Total: 9.54 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.42 Total: -7.50 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.22 Total: -58.89 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.35 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.98 -11.24 -43.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305225.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.933 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds