Wall clock time and date at job start Wed Apr 1 2020 00:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31605 * 1 3 3 Si 1.86800 * 120.00055 * 2 1 4 4 H 1.48495 * 109.47291 * 270.00104 * 3 2 1 5 5 H 1.48505 * 109.46905 * 29.99892 * 3 2 1 6 6 H 1.48502 * 109.47427 * 149.99598 * 3 2 1 7 7 C 1.38813 * 120.00427 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99972 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00293 * 179.73006 * 7 2 1 10 10 C 1.46498 * 120.00138 * 180.27582 * 9 7 2 11 11 H 1.08999 * 110.47854 * 353.87942 * 10 9 7 12 12 C 1.55060 * 110.53597 * 231.06154 * 10 9 7 13 13 C 1.54195 * 102.50665 * 280.82036 * 12 10 9 14 14 C 1.54321 * 104.34630 * 321.00203 * 13 12 10 15 15 H 1.09008 * 111.68683 * 261.64229 * 14 13 12 16 16 C 1.53768 * 109.79451 * 137.15432 * 14 13 12 17 17 N 1.47211 * 106.38173 * 227.23865 * 16 14 13 18 18 C 1.34776 * 126.70707 * 211.27900 * 17 16 14 19 19 O 1.21554 * 120.00245 * 185.29040 * 18 17 16 20 20 C 1.47838 * 119.99594 * 5.29095 * 18 17 16 21 21 C 1.40023 * 120.56253 * 323.25586 * 20 18 17 22 22 C 1.38352 * 118.28810 * 180.02562 * 21 20 18 23 23 C 1.38352 * 119.30599 * 0.02562 * 22 21 20 24 24 N 1.31923 * 121.07930 * 359.97438 * 23 22 21 25 25 C 1.31696 * 121.87822 * 359.74845 * 24 23 22 26 26 C 1.50702 * 119.71555 * 180.26623 * 25 24 23 27 27 C 1.53002 * 117.49822 * 1.98761 * 26 25 24 28 28 C 1.52999 * 117.49692 * 293.32575 * 26 25 24 29 29 C 1.47216 * 106.59342 * 31.28301 * 17 16 14 30 30 C 1.53775 * 106.37809 * 328.71540 * 29 17 16 31 31 H 1.08998 * 112.38677 * 256.84720 * 30 29 17 32 32 H 0.96999 * 120.00845 * 0.02562 * 1 2 3 33 33 H 0.97002 * 120.00248 * 0.26814 * 9 7 2 34 34 H 1.09005 * 110.89896 * 39.64626 * 12 10 9 35 35 H 1.08998 * 110.90516 * 163.23687 * 12 10 9 36 36 H 1.09004 * 111.31796 * 201.75460 * 13 12 10 37 37 H 1.09005 * 109.47286 * 79.32569 * 13 12 10 38 38 H 1.08993 * 110.07655 * 346.47296 * 16 14 13 39 39 H 1.09005 * 110.07457 * 107.95909 * 16 14 13 40 40 H 1.07997 * 120.85142 * 359.97438 * 21 20 18 41 41 H 1.08005 * 120.34788 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.45729 * 179.97438 * 23 22 21 43 43 H 1.09003 * 115.54730 * 147.65690 * 26 25 24 44 44 H 1.08992 * 117.49945 * 359.97438 * 27 26 25 45 45 H 1.09002 * 117.50044 * 145.02331 * 27 26 25 46 46 H 1.09010 * 117.49478 * 214.97619 * 28 26 25 47 47 H 1.08993 * 117.50391 * 359.97438 * 28 26 25 48 48 H 1.08996 * 110.07288 * 209.49037 * 29 17 16 49 49 H 1.08998 * 110.07340 * 87.94329 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3795 -1.2021 -0.0061 10 6 4.1120 -2.4707 -0.0128 11 1 3.4239 -3.3090 0.0964 12 6 5.1789 -2.4887 1.1123 13 6 6.3228 -1.6547 0.5011 14 6 6.3525 -2.0762 -0.9832 15 1 7.1224 -2.8239 -1.1743 16 6 6.5314 -0.8353 -1.8734 17 7 5.5295 -0.9461 -2.9463 18 6 5.6473 -0.4895 -4.2089 19 8 4.7039 -0.5619 -4.9719 20 6 6.9241 0.0993 -4.6657 21 6 7.6995 0.8785 -3.7984 22 6 8.8858 1.4070 -4.2752 23 6 9.2643 1.1518 -5.5813 24 7 8.5132 0.4139 -6.3761 25 6 7.3788 -0.1154 -5.9672 26 6 6.5620 -0.9557 -6.9148 27 6 7.1280 -1.1920 -8.3165 28 6 5.9348 -0.2531 -8.1206 29 6 4.3736 -1.6531 -2.3707 30 6 4.9368 -2.6129 -1.3095 31 1 4.9659 -3.6455 -1.6572 32 1 -0.4851 0.8400 -0.0004 33 1 3.8646 -0.3620 -0.0058 34 1 4.7939 -2.0254 2.0207 35 1 5.5188 -3.5054 1.3098 36 1 7.2758 -1.8774 0.9810 37 1 6.0884 -0.5941 0.5927 38 1 6.3584 0.0703 -1.2921 39 1 7.5352 -0.8209 -2.2980 40 1 7.3793 1.0627 -2.7836 41 1 9.5100 2.0125 -3.6347 42 1 10.1897 1.5636 -5.9562 43 1 5.9982 -1.7680 -6.4561 44 1 8.0907 -0.7394 -8.5534 45 1 6.9360 -2.1596 -8.7803 46 1 4.9585 -0.6036 -8.4555 47 1 6.1126 0.8168 -8.2283 48 1 3.8551 -2.2161 -3.1467 49 1 3.6923 -0.9402 -1.9064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026305227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:14 Heat of formation + Delta-G solvation = 39.618299 kcal Electronic energy + Delta-G solvation = -30716.086259 eV Core-core repulsion = 26836.724988 eV Total energy + Delta-G solvation = -3879.361272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.12767 -41.08887 -39.49370 -37.90234 -36.66313 -35.18363 -33.76185 -33.06782 -32.27760 -30.65655 -30.08115 -26.93867 -26.11538 -25.56492 -24.88182 -23.98667 -23.22772 -21.96643 -21.19644 -20.73455 -20.36545 -19.67183 -18.46095 -18.06064 -17.36393 -17.27153 -16.82027 -16.64789 -16.19793 -15.94787 -15.65397 -15.50522 -15.11540 -14.86349 -14.74317 -14.57190 -14.43146 -14.16374 -13.87216 -13.65289 -13.38753 -13.36729 -12.98741 -12.78260 -12.43464 -12.41717 -12.23013 -12.07325 -11.93996 -11.77674 -11.64359 -11.53503 -11.48489 -11.45695 -11.42352 -11.16795 -11.00729 -10.88169 -10.45692 -9.97359 -9.76357 -9.19020 -8.04927 -5.36202 -0.34202 0.11031 1.27163 1.33844 1.39410 1.62126 1.88844 2.43040 2.55189 3.00838 3.10475 3.23609 3.28629 3.43213 3.51710 3.61836 3.76021 3.83362 3.90617 3.95734 4.07918 4.10414 4.17257 4.23757 4.33308 4.41672 4.42795 4.52189 4.57818 4.59763 4.71016 4.72543 4.73946 4.83882 4.91783 4.96124 4.96652 5.01904 5.07636 5.10605 5.12862 5.22372 5.26019 5.36771 5.40983 5.42713 5.57530 5.59642 5.79108 6.20375 6.45355 6.84764 6.99065 7.06331 7.83130 7.99733 9.16863 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012444 B = 0.003693 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.554649 B = 7581.062731 C = 8159.863332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.059 4.059 3 Si 0.937 3.063 4 H -0.295 1.295 5 H -0.296 1.296 6 H -0.240 1.240 7 C -0.223 4.223 8 H 0.062 0.938 9 N -0.732 5.732 10 C 0.169 3.831 11 H 0.060 0.940 12 C -0.131 4.131 13 C -0.108 4.108 14 C -0.088 4.088 15 H 0.114 0.886 16 C 0.094 3.906 17 N -0.609 5.609 18 C 0.565 3.435 19 O -0.573 6.573 20 C -0.192 4.192 21 C -0.050 4.050 22 C -0.168 4.168 23 C 0.122 3.878 24 N -0.499 5.499 25 C 0.198 3.802 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.155 4.155 29 C 0.099 3.901 30 C -0.114 4.114 31 H 0.095 0.905 32 H 0.255 0.745 33 H 0.365 0.635 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.156 0.844 41 H 0.184 0.816 42 H 0.200 0.800 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.040 0.960 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.513 -0.773 -6.520 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.251 4.251 3 Si 0.766 3.234 4 H -0.223 1.223 5 H -0.223 1.223 6 H -0.164 1.164 7 C -0.354 4.354 8 H 0.080 0.920 9 N -0.373 5.373 10 C 0.060 3.940 11 H 0.079 0.921 12 C -0.170 4.170 13 C -0.145 4.145 14 C -0.107 4.107 15 H 0.132 0.868 16 C -0.027 4.027 17 N -0.340 5.340 18 C 0.354 3.646 19 O -0.453 6.453 20 C -0.197 4.197 21 C -0.076 4.076 22 C -0.187 4.187 23 C -0.035 4.035 24 N -0.208 5.208 25 C 0.060 3.940 26 C -0.152 4.152 27 C -0.174 4.174 28 C -0.192 4.192 29 C -0.024 4.024 30 C -0.135 4.135 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.198 0.802 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.173 0.827 41 H 0.201 0.799 42 H 0.216 0.784 43 H 0.117 0.883 44 H 0.130 0.870 45 H 0.129 0.871 46 H 0.116 0.884 47 H 0.107 0.893 48 H 0.058 0.942 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 27.069 -1.007 -7.822 28.194 hybrid contribution -1.326 1.242 0.792 1.982 sum 25.743 0.235 -7.030 26.687 Atomic orbital electron populations 1.69847 1.07058 1.26359 1.60037 1.25359 0.95883 1.00649 1.03172 0.85670 0.79530 0.80930 0.77288 1.22276 1.22278 1.16438 1.19081 0.82601 0.93304 1.40381 0.92046 1.42722 1.02181 1.04042 1.88363 1.21319 0.92415 0.87442 0.92842 0.92141 1.22842 0.95347 1.01310 0.97501 1.22331 0.99525 0.99417 0.93254 1.22614 0.96448 0.96393 0.95250 0.86828 1.22757 0.92722 0.99301 0.87950 1.48611 1.19342 1.56207 1.09832 1.18232 0.87788 0.78119 0.80421 1.90773 1.41382 1.58351 1.54840 1.20572 0.96594 1.05586 0.96998 1.22233 0.93314 0.92284 0.99805 1.22522 0.96902 1.01361 0.97896 1.23688 0.98547 0.90918 0.90356 1.67491 1.04810 1.10504 1.38005 1.20375 0.90906 0.92714 0.89968 1.20840 1.02991 1.01635 0.89699 1.23041 0.98247 1.01170 0.94979 1.22861 0.98424 0.98688 0.99266 1.22399 0.88770 0.96194 0.95030 1.23092 0.95914 0.98626 0.95894 0.88640 0.93557 0.80162 0.92210 0.89086 0.88260 0.92650 0.90698 0.88057 0.82677 0.79878 0.78366 0.88310 0.86961 0.87117 0.88379 0.89337 0.94156 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.50 13.97 21.65 0.30 -63.20 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.94 45.73 27.73 68.60 1.90 47.63 16 4 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 5 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.24 -10.10 6.52 99.48 0.65 -9.45 16 7 C -0.22 -12.25 10.07 84.03 0.85 -11.40 16 8 H 0.06 3.72 7.92 -2.91 -0.02 3.69 16 9 N -0.73 -31.50 2.73 -317.49 -0.87 -32.37 16 10 C 0.17 5.63 3.54 46.15 0.16 5.80 16 11 H 0.06 2.19 7.85 -2.39 -0.02 2.17 16 12 C -0.13 -3.21 6.56 31.70 0.21 -3.01 16 13 C -0.11 -2.08 6.14 31.45 0.19 -1.89 16 14 C -0.09 -1.80 3.87 -9.44 -0.04 -1.84 16 15 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 16 C 0.09 2.09 4.84 86.50 0.42 2.51 16 17 N -0.61 -19.56 3.32 -818.60 -2.72 -22.27 16 18 C 0.56 20.03 7.09 86.78 0.62 20.65 16 19 O -0.57 -25.25 15.19 -3.88 -0.06 -25.30 16 20 C -0.19 -5.35 5.54 -19.99 -0.11 -5.46 16 21 C -0.05 -0.98 7.94 22.73 0.18 -0.80 16 22 C -0.17 -2.14 10.10 22.32 0.23 -1.92 16 23 C 0.12 1.79 11.17 84.71 0.95 2.73 16 24 N -0.50 -11.18 9.28 -182.84 -1.70 -12.88 16 25 C 0.20 5.40 6.49 42.89 0.28 5.68 16 26 C -0.13 -3.75 4.62 -11.54 -0.05 -3.80 16 27 C -0.14 -2.97 10.03 30.62 0.31 -2.66 16 28 C -0.15 -3.98 10.24 30.62 0.31 -3.66 16 29 C 0.10 3.69 6.38 86.50 0.55 4.25 16 30 C -0.11 -3.26 3.90 -9.44 -0.04 -3.30 16 31 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 33 H 0.36 15.29 5.15 -92.71 -0.48 14.81 16 34 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.21 6.96 -2.38 -0.02 1.19 16 38 H 0.07 1.61 6.80 -2.39 -0.02 1.59 16 39 H 0.10 1.70 6.05 -2.38 -0.01 1.68 16 40 H 0.16 2.55 5.83 -2.91 -0.02 2.54 16 41 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.10 3.22 6.95 -2.39 -0.02 3.20 16 44 H 0.11 2.29 7.54 -2.39 -0.02 2.28 16 45 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.04 1.68 7.98 -2.39 -0.02 1.66 16 49 H 0.08 3.69 5.16 -2.39 -0.01 3.68 16 Total: -1.00 -78.71 380.72 2.78 -75.93 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.44 Total: 33.59 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.48 Total: -1.13 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -4.98 Total: -130.72 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.06 Total: -25.30 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.63 kcal Total: -78.71 2.78 -75.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.546 kcal (2) G-P(sol) polarization free energy of solvation -78.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds