Wall clock time and date at job start Wed Apr 1 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99632 * 2 1 4 4 H 1.48497 * 109.47427 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46769 * 239.99739 * 3 2 1 6 6 H 1.48502 * 109.47507 * 119.99886 * 3 2 1 7 7 C 1.38808 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99504 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00396 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99868 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.91491 * 34.65799 * 10 9 7 12 12 C 1.53869 * 109.92139 * 273.53922 * 10 9 7 13 13 C 1.54127 * 106.49812 * 242.35469 * 12 10 9 14 14 C 1.54834 * 104.63262 * 335.50247 * 13 12 10 15 15 H 1.08999 * 113.73540 * 272.72188 * 14 13 12 16 16 C 1.54214 * 108.04862 * 145.45658 * 14 13 12 17 17 N 1.46912 * 107.63046 * 272.98727 * 16 14 13 18 18 C 1.34778 * 125.61589 * 181.48100 * 17 16 14 19 19 O 1.21273 * 120.00105 * 175.15103 * 18 17 16 20 20 C 1.50705 * 119.99743 * 355.14668 * 18 17 16 21 21 C 1.50694 * 115.55416 * 280.17264 * 20 18 17 22 22 C 1.38681 * 120.41485 * 329.94463 * 21 20 18 23 23 C 1.38631 * 118.41710 * 179.78209 * 22 21 20 24 24 C 1.38226 * 119.16124 * 0.46596 * 23 22 21 25 25 N 1.31857 * 120.76614 * 359.77555 * 24 23 22 26 26 C 1.31885 * 121.72299 * 359.97438 * 25 24 23 27 27 C 1.52999 * 117.49328 * 134.46780 * 20 18 17 28 28 C 1.53002 * 117.49483 * 65.84560 * 20 18 17 29 29 C 1.47342 * 108.76273 * 1.52367 * 17 16 14 30 30 C 1.53718 * 109.91926 * 155.98464 * 10 9 7 31 31 H 1.08994 * 112.96693 * 264.45810 * 30 10 9 32 32 H 0.97000 * 119.99985 * 180.02562 * 1 2 3 33 33 H 0.96996 * 119.99863 * 359.97438 * 9 7 2 34 34 H 1.09005 * 110.05246 * 1.62029 * 12 10 9 35 35 H 1.09006 * 110.05093 * 123.04037 * 12 10 9 36 36 H 1.09000 * 110.40272 * 94.29154 * 13 12 10 37 37 H 1.09005 * 110.40584 * 216.70874 * 13 12 10 38 38 H 1.08996 * 109.82160 * 32.51337 * 16 14 13 39 39 H 1.08994 * 109.82223 * 153.46722 * 16 14 13 40 40 H 1.07995 * 120.79059 * 0.02562 * 22 21 20 41 41 H 1.07995 * 120.41994 * 180.22531 * 23 22 21 42 42 H 1.07997 * 119.62023 * 179.74864 * 24 23 22 43 43 H 1.07997 * 119.61910 * 180.02562 * 26 25 24 44 44 H 1.08999 * 117.50311 * 359.97438 * 27 20 18 45 45 H 1.08997 * 117.49796 * 145.01999 * 27 20 18 46 46 H 1.08999 * 117.49406 * 214.96839 * 28 20 18 47 47 H 1.09000 * 117.50057 * 0.02562 * 28 20 18 48 48 H 1.08996 * 110.30164 * 95.02226 * 29 17 16 49 49 H 1.09004 * 110.29439 * 217.05736 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6964 -1.2125 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9739 -3.5567 0.5833 12 6 2.3977 -4.0661 -1.4433 13 6 1.6727 -5.4014 -1.7017 14 6 1.4828 -6.0218 -0.2958 15 1 2.3300 -6.6212 0.0373 16 6 0.1420 -6.7836 -0.2868 17 7 -0.9123 -5.8246 0.0694 18 6 -2.2213 -6.1133 0.2094 19 8 -2.9929 -5.2599 0.5928 20 6 -2.7261 -7.4968 -0.1104 21 6 -2.9386 -7.7891 -1.5734 22 6 -3.2875 -6.7719 -2.4491 23 6 -3.4683 -7.0864 -3.7872 24 6 -3.3056 -8.3957 -4.1992 25 7 -2.9782 -9.3384 -3.3373 26 6 -2.7935 -9.0748 -2.0584 27 6 -3.6876 -8.1461 0.8870 28 6 -2.2459 -8.6468 0.7773 29 6 -0.3030 -4.4949 0.2474 30 6 1.1769 -4.7704 0.5887 31 1 1.3568 -4.9390 1.6504 32 1 -0.4850 -0.8400 0.0004 33 1 0.3557 -2.3881 0.0005 34 1 2.0426 -3.3069 -2.1403 35 1 3.4744 -4.1975 -1.5512 36 1 0.7057 -5.2239 -2.1725 37 1 2.2858 -6.0525 -2.3248 38 1 -0.0541 -7.1982 -1.2756 39 1 0.1773 -7.5851 0.4510 40 1 -3.4114 -5.7583 -2.0978 41 1 -3.7367 -6.3188 -4.4979 42 1 -3.4486 -8.6497 -5.2391 43 1 -2.5256 -9.8732 -1.3821 44 1 -3.9546 -7.5728 1.7748 45 1 -4.4741 -8.7847 0.4852 46 1 -2.0842 -9.6148 0.3031 47 1 -1.5652 -8.4026 1.5928 48 1 -0.3776 -3.9182 -0.6745 49 1 -0.7886 -3.9630 1.0656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026338491.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:52:28 Heat of formation + Delta-G solvation = 52.764778 kcal Electronic energy + Delta-G solvation = -30646.618822 eV Core-core repulsion = 26767.827625 eV Total energy + Delta-G solvation = -3878.791197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.19645 -40.22427 -38.88533 -36.77256 -35.28962 -33.52941 -32.69312 -31.12873 -30.97077 -29.42883 -28.32816 -25.98285 -25.07050 -23.95999 -23.64754 -23.23519 -22.64160 -21.72724 -19.86354 -19.10188 -19.02367 -17.75412 -17.33454 -17.14298 -16.35220 -16.22568 -15.92504 -15.29579 -14.94655 -14.82450 -14.58758 -14.13619 -13.77281 -13.68974 -13.48566 -13.44024 -13.20229 -13.05061 -12.66700 -12.62838 -12.42098 -12.18809 -11.81183 -11.63136 -11.39574 -11.22794 -10.99127 -10.76005 -10.67580 -10.57441 -10.52240 -10.38639 -10.08100 -10.01825 -9.94788 -9.90181 -9.53006 -9.16729 -9.11854 -8.92289 -8.56639 -7.05227 -6.10053 -3.11268 0.76847 1.01018 2.50041 2.85244 3.25976 3.51203 3.54571 3.67407 3.72462 3.99294 4.21640 4.25834 4.43602 4.45621 4.54389 4.60499 4.68891 4.72960 4.73393 4.86506 4.97632 5.14039 5.20282 5.31292 5.33691 5.39050 5.40545 5.43844 5.50076 5.53768 5.60396 5.65466 5.73795 5.78218 5.82077 5.85630 5.89758 5.94471 5.99129 6.10083 6.23133 6.32436 6.37669 6.39100 6.42342 6.53832 6.70554 6.98777 7.53164 7.66544 7.80863 8.13451 8.74474 9.20949 10.07266 10.21188 11.37479 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.003032 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.456741 B = 9232.523246 C = 9254.337142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.334 4.334 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.189 3.811 11 H 0.055 0.945 12 C -0.145 4.145 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.104 0.896 16 C 0.109 3.891 17 N -0.606 5.606 18 C 0.564 3.436 19 O -0.529 6.529 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.063 4.063 23 C -0.164 4.164 24 C 0.093 3.907 25 N -0.480 5.480 26 C 0.101 3.899 27 C -0.133 4.133 28 C -0.159 4.159 29 C 0.116 3.884 30 C -0.104 4.104 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.369 0.631 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.157 0.843 43 H 0.156 0.844 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 -22.246 -3.387 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.465 4.465 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.078 3.922 11 H 0.073 0.927 12 C -0.185 4.185 13 C -0.153 4.153 14 C -0.121 4.121 15 H 0.122 0.878 16 C -0.014 4.014 17 N -0.339 5.339 18 C 0.350 3.650 19 O -0.405 6.405 20 C -0.117 4.117 21 C -0.090 4.090 22 C -0.089 4.089 23 C -0.183 4.183 24 C -0.064 4.064 25 N -0.189 5.189 26 C -0.056 4.056 27 C -0.170 4.170 28 C -0.196 4.196 29 C -0.006 4.006 30 C -0.124 4.124 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.204 0.796 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.124 0.876 48 H 0.097 0.903 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.421 -20.931 -3.478 21.492 hybrid contribution -0.084 -0.708 0.136 0.726 sum -3.505 -21.639 -3.343 22.174 Atomic orbital electron populations 1.70890 1.06031 1.28435 1.53273 1.25762 0.97026 1.00999 1.00384 0.83253 0.74217 0.75713 0.75807 1.21057 1.22311 1.22285 1.20036 0.92000 0.85791 1.48676 0.91745 1.42702 1.04905 1.00671 1.89765 1.20606 0.93773 0.85029 0.92810 0.92711 1.22957 0.98949 0.95948 1.00673 1.22409 1.00587 0.97182 0.95099 1.23173 0.95767 0.96065 0.97133 0.87815 1.22021 0.87340 0.91919 1.00120 1.48431 1.06015 1.11187 1.68253 1.18876 0.80751 0.87727 0.77606 1.90754 1.54959 1.48747 1.46084 1.19944 1.08126 0.93068 0.90545 1.19700 1.01425 0.95053 0.92813 1.21554 0.94347 0.99869 0.93105 1.22185 1.01342 0.98418 0.96398 1.22796 0.95099 0.88965 0.99500 1.67734 1.11620 1.36538 1.02962 1.22595 0.96165 0.94740 0.92146 1.23113 0.93123 1.01290 0.99453 1.23243 0.98316 0.96913 1.01123 1.22188 0.92348 0.83540 1.02529 1.23198 0.94388 0.95422 0.99415 0.89303 0.93424 0.79564 0.90915 0.92874 0.92010 0.92285 0.91658 0.91664 0.84729 0.84418 0.82586 0.82690 0.87353 0.87573 0.87310 0.87576 0.90276 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.27 13.70 55.49 0.76 -28.51 16 2 C -0.04 -1.27 5.50 -17.43 -0.10 -1.36 16 3 Si 1.08 25.91 29.92 -169.99 -5.09 20.83 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.30 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.30 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.33 -9.23 9.95 -15.06 -0.15 -9.38 16 8 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 9 N -0.74 -17.85 4.79 -52.63 -0.25 -18.10 16 10 C 0.19 3.56 3.24 -67.11 -0.22 3.35 16 11 H 0.05 1.07 8.09 -51.93 -0.42 0.65 16 12 C -0.14 -2.44 6.56 -25.69 -0.17 -2.61 16 13 C -0.11 -1.55 5.58 -25.18 -0.14 -1.69 16 14 C -0.10 -1.23 4.25 -87.26 -0.37 -1.60 16 15 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 16 C 0.11 1.24 5.45 -3.18 -0.02 1.22 16 17 N -0.61 -8.75 3.32 -171.10 -0.57 -9.32 16 18 C 0.56 8.54 5.92 -10.98 -0.06 8.48 16 19 O -0.53 -10.26 17.22 5.56 0.10 -10.16 16 20 C -0.11 -1.26 1.70 -156.81 -0.27 -1.53 16 21 C -0.09 -0.97 5.49 -104.48 -0.57 -1.54 16 22 C -0.06 -0.75 9.44 -39.27 -0.37 -1.12 16 23 C -0.16 -1.63 10.11 -39.44 -0.40 -2.03 16 24 C 0.09 0.89 11.18 -17.55 -0.20 0.70 16 25 N -0.48 -5.24 10.36 -13.25 -0.14 -5.38 16 26 C 0.10 1.00 10.53 -17.55 -0.18 0.81 16 27 C -0.13 -1.23 9.83 -26.73 -0.26 -1.50 16 28 C -0.16 -1.26 8.50 -26.73 -0.23 -1.49 16 29 C 0.12 2.00 4.42 -2.87 -0.01 1.98 16 30 C -0.10 -1.62 4.03 -87.78 -0.35 -1.97 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.25 7.87 6.77 -40.82 -0.28 7.59 16 33 H 0.37 9.30 4.16 -40.82 -0.17 9.13 16 34 H 0.07 1.45 7.91 -51.93 -0.41 1.04 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.91 7.28 -51.93 -0.38 0.54 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 39 H 0.07 0.61 7.01 -51.93 -0.36 0.25 16 40 H 0.13 1.81 7.44 -52.49 -0.39 1.42 16 41 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.16 1.16 5.97 -52.49 -0.31 0.84 16 44 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.11 0.62 6.13 -51.93 -0.32 0.30 16 47 H 0.11 0.83 7.75 -51.93 -0.40 0.43 16 48 H 0.08 1.55 6.30 -51.93 -0.33 1.22 16 49 H 0.08 1.57 7.97 -51.93 -0.41 1.15 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -34.03 385.72 -10.63 -44.66 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.18 Total: 11.44 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -4.07 Total: -11.28 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.20 Total: -61.31 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.10 Total: -10.16 kcal Atomic # 14 Polarization: 25.91 SS G_CDS: -5.09 Total: 20.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.03 -10.63 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026338491.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.426 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds