Wall clock time and date at job start Wed Apr 1 2020 01:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00227 * 2 1 4 4 H 1.48502 * 109.47305 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47135 * 300.00062 * 3 2 1 6 6 H 1.48502 * 109.46995 * 59.99695 * 3 2 1 7 7 C 1.38815 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99904 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00111 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.05699 * 324.58258 * 10 9 7 12 12 C 1.54725 * 111.53363 * 203.74828 * 10 9 7 13 13 C 1.54114 * 106.75999 * 242.34442 * 12 10 9 14 14 C 1.54453 * 104.73194 * 335.68902 * 13 12 10 15 15 H 1.08998 * 113.73778 * 272.41674 * 14 13 12 16 16 C 1.54887 * 109.70873 * 143.80195 * 14 13 12 17 17 N 1.47356 * 105.01387 * 288.54387 * 16 14 13 18 18 C 1.34775 * 125.70797 * 155.08758 * 17 16 14 19 19 O 1.21513 * 120.00444 * 179.69424 * 18 17 16 20 20 C 1.48174 * 119.99780 * 359.69108 * 18 17 16 21 21 C 1.39307 * 119.72599 * 180.02562 * 20 18 17 22 22 C 1.38583 * 119.05973 * 180.02562 * 21 20 18 23 23 C 1.38625 * 118.49135 * 359.97438 * 22 21 20 24 24 C 1.50701 * 120.32534 * 179.97438 * 23 22 21 25 25 C 1.52997 * 117.49961 * 119.99850 * 24 23 22 26 26 C 1.53001 * 60.00164 * 107.48975 * 25 24 23 27 27 C 1.38560 * 119.34828 * 0.24824 * 23 22 21 28 28 N 1.31521 * 120.90585 * 359.50036 * 27 23 22 29 29 C 1.47034 * 108.59104 * 334.82343 * 17 16 14 30 30 C 1.53910 * 109.91020 * 85.76647 * 10 9 7 31 31 H 1.08997 * 112.92587 * 265.08368 * 30 10 9 32 32 H 0.96998 * 120.00217 * 0.02562 * 1 2 3 33 33 H 0.96996 * 120.00514 * 359.97438 * 9 7 2 34 34 H 1.08993 * 110.72677 * 122.59822 * 12 10 9 35 35 H 1.09005 * 109.25778 * 1.28364 * 12 10 9 36 36 H 1.08998 * 110.38127 * 216.87266 * 13 12 10 37 37 H 1.09001 * 110.47965 * 94.55169 * 13 12 10 38 38 H 1.09001 * 110.45508 * 169.62824 * 16 14 13 39 39 H 1.09004 * 110.28988 * 47.37277 * 16 14 13 40 40 H 1.08004 * 120.46459 * 359.97415 * 21 20 18 41 41 H 1.08000 * 120.75512 * 180.02562 * 22 21 20 42 42 H 1.09003 * 115.56057 * 334.30142 * 24 23 22 43 43 H 1.08999 * 117.50143 * 359.97438 * 25 24 23 44 44 H 1.09010 * 117.49554 * 214.97780 * 25 24 23 45 45 H 1.08994 * 117.50476 * 107.48648 * 26 25 24 46 46 H 1.09002 * 117.49498 * 252.48971 * 26 25 24 47 47 H 1.08000 * 119.54525 * 179.74971 * 27 23 22 48 48 H 1.09001 * 109.82661 * 122.04781 * 29 17 16 49 49 H 1.09003 * 109.82989 * 242.92098 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9676 -3.5634 -0.5929 12 6 1.2010 -4.8073 -0.5791 13 6 1.0169 -5.8377 0.5521 14 6 2.2197 -5.6071 1.4931 15 1 3.1081 -6.1751 1.2169 16 6 1.7799 -5.8149 2.9636 17 7 0.9306 -4.6519 3.2760 18 6 -0.0323 -4.6115 4.2181 19 8 -0.6691 -3.5915 4.3927 20 6 -0.3145 -5.8110 5.0410 21 6 -1.3114 -5.7631 6.0128 22 6 -1.5635 -6.8928 6.7749 23 6 -0.8097 -8.0319 6.5381 24 6 -1.0486 -9.2834 7.3430 25 6 -1.4610 -10.5449 6.5818 26 6 -0.0541 -10.4335 7.1727 27 6 0.1694 -8.0067 5.5580 28 7 0.3846 -6.9222 4.8458 29 6 1.3137 -3.5409 2.3925 30 6 2.4126 -4.0574 1.4437 31 1 3.4128 -3.7403 1.7388 32 1 -0.4850 0.8400 -0.0004 33 1 0.3556 -2.3881 0.0005 34 1 1.7021 -5.2714 -1.4285 35 1 0.2321 -4.4140 -0.8869 36 1 1.0379 -6.8506 0.1501 37 1 0.0809 -5.6595 1.0816 38 1 2.6486 -5.8366 3.6216 39 1 1.2079 -6.7378 3.0602 40 1 -1.8793 -4.8581 6.1706 41 1 -2.3302 -6.8862 7.5354 42 1 -1.4767 -9.1307 8.3338 43 1 -1.5599 -10.4696 5.4990 44 1 -2.1605 -11.2223 7.0719 45 1 0.1722 -11.0375 8.0513 46 1 0.7730 -10.2854 6.4783 47 1 0.7613 -8.8911 5.3736 48 1 0.4497 -3.2137 1.8141 49 1 1.6965 -2.7110 2.9866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026409772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:10:59 Heat of formation + Delta-G solvation = 57.442860 kcal Electronic energy + Delta-G solvation = -29866.595589 eV Core-core repulsion = 25988.007248 eV Total energy + Delta-G solvation = -3878.588341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97443 -39.89657 -38.25950 -37.25313 -34.97200 -33.27685 -32.67851 -31.27415 -30.80867 -29.06618 -28.19455 -25.78697 -25.00382 -24.20371 -23.27809 -22.85801 -22.71726 -21.13239 -19.86793 -19.66898 -18.62851 -17.39262 -17.36612 -17.20624 -15.97074 -15.83366 -15.50590 -15.04727 -14.86734 -14.82486 -14.69480 -13.88775 -13.84477 -13.60033 -13.31503 -13.17693 -12.98415 -12.94941 -12.42904 -12.26972 -12.16420 -12.01095 -11.84223 -11.42726 -11.34924 -10.99523 -10.88443 -10.71227 -10.67548 -10.49501 -10.26695 -10.23609 -10.08665 -10.02202 -9.93007 -9.78661 -9.58908 -9.32234 -9.07650 -8.83555 -8.12600 -6.91464 -5.72504 -3.01912 0.46822 0.99996 2.76886 3.22219 3.40212 3.46857 3.52104 3.54755 3.82849 3.92569 4.16422 4.35195 4.47049 4.53717 4.60448 4.62396 4.68319 4.77827 5.00043 5.04881 5.06021 5.16393 5.18314 5.39070 5.48821 5.55247 5.61189 5.63331 5.66323 5.70706 5.73678 5.83041 5.84686 5.90695 5.92976 6.05462 6.15709 6.21396 6.26130 6.37443 6.39883 6.42901 6.66420 6.69109 6.79235 6.89575 6.93727 7.06124 7.54392 7.75533 7.89584 8.43269 8.45502 9.56511 10.13378 10.47020 11.49734 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002649 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.916889 B =10568.010337 C =11463.846037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.181 3.819 11 H 0.051 0.949 12 C -0.130 4.130 13 C -0.110 4.110 14 C -0.110 4.110 15 H 0.096 0.904 16 C 0.109 3.891 17 N -0.592 5.592 18 C 0.572 3.428 19 O -0.532 6.532 20 C 0.086 3.914 21 C -0.108 4.108 22 C -0.077 4.077 23 C -0.089 4.089 24 C -0.119 4.119 25 C -0.166 4.166 26 C -0.174 4.174 27 C 0.091 3.909 28 N -0.446 5.446 29 C 0.128 3.872 30 C -0.118 4.118 31 H 0.080 0.920 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.159 0.841 48 H 0.091 0.909 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.200 -24.378 13.341 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.070 3.930 11 H 0.069 0.931 12 C -0.168 4.168 13 C -0.148 4.148 14 C -0.130 4.130 15 H 0.115 0.885 16 C -0.014 4.014 17 N -0.324 5.324 18 C 0.358 3.642 19 O -0.409 6.409 20 C -0.052 4.052 21 C -0.129 4.129 22 C -0.103 4.103 23 C -0.091 4.091 24 C -0.138 4.138 25 C -0.203 4.203 26 C -0.211 4.211 27 C -0.068 4.068 28 N -0.157 5.157 29 C 0.007 3.993 30 C -0.140 4.140 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.135 0.865 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.176 0.824 48 H 0.109 0.891 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.155 -23.585 12.777 26.823 hybrid contribution -0.445 0.986 0.814 1.354 sum -0.290 -22.599 13.591 26.372 Atomic orbital electron populations 1.69663 1.05079 1.25593 1.57264 1.24742 0.95455 0.97669 1.02817 0.86163 0.78777 0.84369 0.77139 1.20588 1.21951 1.21895 1.19239 0.90965 0.83979 1.43029 0.91118 1.42563 1.05686 0.99709 1.87851 1.20813 0.94533 0.86254 0.91421 0.93108 1.22545 1.01036 0.95963 0.97258 1.22162 0.97820 0.98319 0.96471 1.23282 0.98392 0.97201 0.94109 0.88550 1.22583 0.94222 0.90025 0.94586 1.48433 1.33896 1.15502 1.34560 1.17462 0.80261 0.86446 0.80053 1.90832 1.49777 1.31616 1.68630 1.21304 0.94689 0.92911 0.96282 1.22142 0.96871 0.99794 0.94089 1.21398 0.98472 0.91614 0.98772 1.20320 0.96702 0.94882 0.97210 1.20969 1.05766 0.87167 0.99854 1.23066 0.98217 0.98594 1.00464 1.23091 0.93421 1.00821 1.03762 1.22746 0.95660 0.96487 0.91897 1.67908 1.24826 0.99023 1.23958 1.22000 0.99395 0.87246 0.90674 1.23567 0.97905 0.93152 0.99382 0.90160 0.93513 0.78090 0.92055 0.91595 0.92417 0.91870 0.92237 0.88120 0.83238 0.84163 0.86535 0.88340 0.88157 0.88092 0.88094 0.82375 0.89076 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.90 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 7 C -0.24 -6.61 9.95 -15.06 -0.15 -6.76 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.72 -17.65 3.61 -52.08 -0.19 -17.84 16 10 C 0.18 3.51 3.24 -66.55 -0.22 3.29 16 11 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 12 C -0.13 -2.13 6.64 -25.24 -0.17 -2.29 16 13 C -0.11 -1.58 5.90 -25.39 -0.15 -1.73 16 14 C -0.11 -1.53 4.22 -87.12 -0.37 -1.90 16 15 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.11 1.54 5.27 -2.58 -0.01 1.52 16 17 N -0.59 -10.48 2.88 -171.71 -0.50 -10.97 16 18 C 0.57 10.59 7.84 -12.18 -0.10 10.49 16 19 O -0.53 -11.80 16.65 5.35 0.09 -11.71 16 20 C 0.09 1.26 6.72 -83.00 -0.56 0.71 16 21 C -0.11 -1.34 9.63 -39.06 -0.38 -1.72 16 22 C -0.08 -0.71 9.88 -39.31 -0.39 -1.10 16 23 C -0.09 -0.76 5.63 -104.36 -0.59 -1.35 16 24 C -0.12 -0.71 6.06 -91.77 -0.56 -1.27 16 25 C -0.17 -0.85 10.17 -26.73 -0.27 -1.13 16 26 C -0.17 -0.84 9.87 -26.73 -0.26 -1.10 16 27 C 0.09 0.88 10.47 -17.57 -0.18 0.70 16 28 N -0.45 -5.63 6.58 -9.80 -0.06 -5.69 16 29 C 0.13 2.59 5.41 -3.18 -0.02 2.58 16 30 C -0.12 -2.06 3.92 -87.83 -0.34 -2.41 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.38 10.28 6.93 -40.82 -0.28 10.00 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.19 7.69 -51.93 -0.40 0.79 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.03 7.39 -51.93 -0.38 0.64 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 1.34 5.79 -51.93 -0.30 1.04 16 40 H 0.15 1.85 7.64 -52.48 -0.40 1.45 16 41 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.10 0.46 6.19 -51.93 -0.32 0.14 16 47 H 0.16 1.11 6.03 -52.49 -0.32 0.79 16 48 H 0.09 2.15 6.16 -51.93 -0.32 1.83 16 49 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -32.96 387.54 -11.26 -44.23 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -7.34 Total: 10.01 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.80 Total: -3.86 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.02 Total: -62.24 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.96 -11.26 -44.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026409772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.670 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds