Wall clock time and date at job start Wed Apr 1 2020 00:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48496 * 109.47119 * 266.75065 * 3 2 1 5 5 H 1.48509 * 109.46916 * 26.74563 * 3 2 1 6 6 H 1.48495 * 109.47543 * 146.74807 * 3 2 1 7 7 C 1.38814 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00186 * 345.24441 * 7 2 1 9 9 N 1.36933 * 119.99870 * 165.23625 * 7 2 1 10 10 C 1.47751 * 125.82739 * 325.56740 * 9 7 2 11 11 C 1.54908 * 104.84544 * 204.24955 * 10 9 7 12 12 C 1.55157 * 101.57924 * 322.90866 * 11 10 9 13 13 C 1.47021 * 125.64805 * 145.57053 * 9 7 2 14 14 H 1.09006 * 109.88389 * 59.32353 * 13 9 7 15 15 C 1.52998 * 109.88137 * 298.31345 * 13 9 7 16 16 N 1.46503 * 109.47257 * 61.81680 * 15 13 9 17 17 C 1.34780 * 120.00135 * 186.05888 * 16 15 13 18 18 O 1.21595 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.47517 * 119.99861 * 180.02562 * 17 16 15 20 20 C 1.39792 * 120.06909 * 180.02562 * 19 17 16 21 21 C 1.37605 * 119.93186 * 179.97438 * 20 19 17 22 22 C 1.39222 * 120.07227 * 359.97438 * 21 20 19 23 23 N 1.39044 * 119.93194 * 180.02562 * 22 21 20 24 24 C 1.48225 * 110.99786 * 119.26016 * 23 22 21 25 25 C 1.51116 * 105.43989 * 92.59512 * 24 23 22 26 26 C 1.30963 * 109.46325 * 16.92437 * 25 24 23 27 27 C 1.48365 * 110.97443 * 232.80765 * 23 22 21 28 28 C 1.39222 * 120.13117 * 0.27151 * 22 21 20 29 29 C 1.37611 * 120.07077 * 359.45141 * 28 22 21 30 30 H 0.97000 * 120.00049 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.43007 * 85.36944 * 10 9 7 32 32 H 1.08995 * 110.37975 * 323.10532 * 10 9 7 33 33 H 1.08996 * 111.00629 * 204.83195 * 11 10 9 34 34 H 1.08995 * 111.00296 * 80.97492 * 11 10 9 35 35 H 1.09003 * 110.72147 * 277.13426 * 12 11 10 36 36 H 1.09002 * 110.86999 * 153.93781 * 12 11 10 37 37 H 1.09000 * 109.47099 * 301.81889 * 15 13 9 38 38 H 1.09005 * 109.47369 * 181.81702 * 15 13 9 39 39 H 0.96998 * 119.99640 * 6.06345 * 16 15 13 40 40 H 1.07999 * 120.03329 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.96634 * 180.02562 * 21 20 19 42 42 H 1.08995 * 110.27252 * 333.57323 * 24 23 22 43 43 H 1.09006 * 110.26231 * 211.60696 * 24 23 22 44 44 H 1.08000 * 125.27388 * 196.92560 * 25 24 23 45 45 H 1.07998 * 125.27678 * 179.97438 * 26 25 24 46 46 H 1.09002 * 110.18615 * 148.42861 * 27 23 22 47 47 H 1.08995 * 110.37597 * 26.44129 * 27 23 22 48 48 H 1.08001 * 119.95733 * 179.70387 * 28 22 21 49 49 H 1.07995 * 120.03075 * 180.28997 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5665 2.0067 -1.3978 5 1 1.4149 2.6716 0.6301 6 1 3.5117 1.4610 0.7676 7 6 2.0102 -1.2022 0.0005 8 1 1.4970 -2.1220 0.2392 9 7 3.3457 -1.2218 -0.3017 10 6 4.0255 -0.3410 -1.2738 11 6 5.2898 -1.1259 -1.7040 12 6 5.7023 -1.8062 -0.3720 13 6 4.3445 -2.1250 0.2884 14 1 4.0702 -3.1612 0.0903 15 6 4.4318 -1.8895 1.7976 16 7 3.1373 -2.1898 2.4144 17 6 2.9399 -1.9372 3.7236 18 8 3.8360 -1.4597 4.3925 19 6 1.6366 -2.2401 4.3448 20 6 1.4300 -1.9783 5.7023 21 6 0.2130 -2.2615 6.2787 22 6 -0.8122 -2.8077 5.5113 23 7 -2.0409 -3.0922 6.0967 24 6 -3.1281 -2.3171 5.4530 25 6 -3.6716 -3.2137 4.3648 26 6 -3.2836 -4.4458 4.5803 27 6 -2.4417 -4.4964 5.8343 28 6 -0.6078 -3.0744 4.1603 29 6 0.6051 -2.7881 3.5767 30 1 -0.4850 0.8400 -0.0004 31 1 4.3058 0.6010 -0.8025 32 1 3.3820 -0.1572 -2.1341 33 1 6.0690 -0.4494 -2.0550 34 1 5.0485 -1.8691 -2.4639 35 1 6.2812 -1.1213 0.2477 36 1 6.2637 -2.7212 -0.5609 37 1 4.6924 -0.8484 1.9884 38 1 5.1965 -2.5393 2.2232 39 1 2.4224 -2.5704 1.8807 40 1 2.2247 -1.5542 6.2981 41 1 0.0526 -2.0590 7.3274 42 1 -2.7321 -1.3976 5.0220 43 1 -3.9088 -2.0878 6.1784 44 1 -4.2851 -2.8888 3.5375 45 1 -3.5278 -5.2944 3.9585 46 1 -3.0287 -4.8820 6.6679 47 1 -1.5614 -5.1186 5.6733 48 1 -1.4035 -3.5026 3.5687 49 1 0.7613 -2.9909 2.5275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028134838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:58 Heat of formation + Delta-G solvation = 62.013284 kcal Electronic energy + Delta-G solvation = -30190.604690 eV Core-core repulsion = 26312.214538 eV Total energy + Delta-G solvation = -3878.390152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.81479 -39.40110 -38.04508 -37.09285 -33.96921 -32.72582 -32.48138 -30.77882 -30.03990 -29.76279 -28.54980 -28.50511 -25.15255 -24.21596 -23.28571 -22.36209 -21.43791 -20.84836 -19.76723 -19.45098 -19.42389 -17.78114 -17.09182 -16.62433 -16.12279 -15.65899 -15.28017 -15.15887 -14.64143 -14.49292 -14.33370 -14.14808 -13.83863 -13.46359 -13.20834 -13.00179 -12.91289 -12.73866 -12.54311 -12.45067 -12.32162 -12.02567 -11.87938 -11.73190 -11.45592 -11.28615 -11.18027 -11.06730 -10.93052 -10.69988 -10.54813 -10.19124 -10.02994 -9.58648 -9.39703 -9.16387 -8.96590 -8.79295 -8.74841 -8.56021 -8.22528 -6.97202 -6.09527 -3.52925 1.01582 1.61169 1.98984 3.23473 3.29539 3.43334 3.48585 3.73175 3.82888 4.17873 4.45682 4.65754 4.71827 4.89237 5.01601 5.11161 5.13818 5.21322 5.26200 5.28168 5.35944 5.39066 5.49566 5.50223 5.53378 5.58039 5.62295 5.74913 5.80774 5.88384 5.91630 6.08640 6.10431 6.19913 6.20436 6.24211 6.28919 6.29245 6.36426 6.40974 6.58751 6.61903 6.64262 6.65606 6.74347 6.83164 6.87388 7.13351 7.36047 7.74425 8.16143 8.23065 8.66844 8.83467 9.55082 10.12813 11.05309 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.003471 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.402577 B = 8065.001800 C = 8941.754026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.040 3.960 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.142 3.858 14 H 0.048 0.952 15 C 0.115 3.885 16 N -0.693 5.693 17 C 0.552 3.448 18 O -0.562 6.562 19 C -0.127 4.127 20 C -0.061 4.061 21 C -0.107 4.107 22 C 0.088 3.912 23 N -0.472 5.472 24 C 0.056 3.944 25 C -0.180 4.180 26 C -0.195 4.195 27 C 0.059 3.941 28 C -0.152 4.152 29 C -0.062 4.062 30 H 0.264 0.736 31 H 0.024 0.976 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.410 0.590 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.130 0.870 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 -8.684 7.090 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.161 4.161 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.328 5.328 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.011 4.011 16 N -0.344 5.344 17 C 0.339 3.661 18 O -0.443 6.443 19 C -0.130 4.130 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.006 4.006 23 N -0.191 5.191 24 C -0.070 4.070 25 C -0.199 4.199 26 C -0.214 4.214 27 C -0.068 4.068 28 C -0.172 4.172 29 C -0.081 4.081 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.249 0.751 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.148 0.852 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.318 -8.124 8.148 11.581 hybrid contribution -0.172 0.840 -1.321 1.574 sum -1.490 -7.284 6.828 10.094 Atomic orbital electron populations 1.69750 1.05637 1.26878 1.52022 1.25324 0.95138 0.97774 0.97856 0.86806 0.79566 0.84109 0.77740 1.21233 1.23030 1.19665 1.18273 0.80778 0.93445 1.45023 0.90164 1.44843 1.04075 1.40862 1.42991 1.22015 0.92791 0.93443 0.93047 1.22703 0.97918 0.99480 0.96814 1.22510 0.96339 1.00404 0.96927 1.21377 0.89738 0.95374 0.89970 0.93433 1.21918 0.84242 1.00580 0.94328 1.45939 1.16544 1.63026 1.08929 1.18171 0.87092 0.78392 0.82401 1.90700 1.44561 1.45907 1.63138 1.20100 0.94653 1.03372 0.94848 1.21156 0.96918 0.96335 0.93604 1.20838 0.91725 1.00021 1.00038 1.19122 0.91387 0.98691 0.91423 1.62950 1.00099 1.04642 1.51399 1.22252 0.93322 0.97232 0.94161 1.24078 1.00778 0.95857 0.99228 1.24007 1.00741 0.98244 0.98400 1.22255 0.98846 0.89987 0.95698 1.21812 0.98150 1.02195 0.95049 1.21338 0.92169 0.94883 0.99717 0.92574 0.95887 0.92650 0.91780 0.91302 0.91425 0.91355 0.91894 0.92947 0.75062 0.84631 0.85092 0.89889 0.88502 0.84463 0.84628 0.88661 0.90238 0.85188 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.91 13.97 55.49 0.78 -25.14 16 2 C 0.04 1.11 5.47 -17.43 -0.10 1.01 16 3 Si 0.89 22.58 24.60 -169.99 -4.18 18.40 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 5 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 6 H -0.27 -7.00 6.68 56.52 0.38 -6.63 16 7 C -0.25 -6.29 8.50 -15.06 -0.13 -6.41 16 8 H 0.08 2.11 7.12 -52.49 -0.37 1.73 16 9 N -0.60 -13.32 2.73 -162.32 -0.44 -13.77 16 10 C 0.11 2.30 4.95 -2.35 -0.01 2.28 16 11 C -0.13 -2.05 7.09 -24.58 -0.17 -2.22 16 12 C -0.12 -1.85 6.48 -24.90 -0.16 -2.02 16 13 C 0.14 2.60 3.33 -66.96 -0.22 2.38 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.12 2.19 5.18 -4.04 -0.02 2.17 16 16 N -0.69 -13.72 4.76 -61.35 -0.29 -14.01 16 17 C 0.55 11.32 7.76 -12.48 -0.10 11.22 16 18 O -0.56 -12.79 16.32 5.28 0.09 -12.71 16 19 C -0.13 -2.30 5.88 -104.95 -0.62 -2.91 16 20 C -0.06 -0.98 9.58 -39.23 -0.38 -1.36 16 21 C -0.11 -1.54 9.95 -39.45 -0.39 -1.93 16 22 C 0.09 1.26 4.53 -83.86 -0.38 0.88 16 23 N -0.47 -5.82 5.59 -171.05 -0.96 -6.78 16 24 C 0.06 0.65 6.44 -4.04 -0.03 0.62 16 25 C -0.18 -1.93 9.74 -35.81 -0.35 -2.28 16 26 C -0.19 -1.94 9.38 -35.81 -0.34 -2.28 16 27 C 0.06 0.61 6.35 -3.96 -0.03 0.58 16 28 C -0.15 -2.33 8.47 -39.44 -0.33 -2.67 16 29 C -0.06 -1.05 9.53 -39.23 -0.37 -1.43 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.51 5.21 -51.93 -0.27 0.24 16 32 H 0.06 1.19 7.92 -51.93 -0.41 0.78 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 1.36 8.12 -51.93 -0.42 0.93 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.41 8.04 4.21 -40.82 -0.17 7.87 16 40 H 0.14 2.12 7.64 -52.49 -0.40 1.72 16 41 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 42 H 0.08 1.07 7.78 -51.93 -0.40 0.67 16 43 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.84 7.66 -51.93 -0.40 0.44 16 48 H 0.13 1.89 5.34 -52.49 -0.28 1.61 16 49 H 0.13 2.31 6.39 -52.49 -0.34 1.97 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -30.99 382.16 -10.63 -41.62 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -7.26 Total: 10.96 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -4.12 Total: -4.34 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.92 Total: -59.69 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.18 Total: 18.40 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.99 -10.63 -41.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028134838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.636 kcal (2) G-P(sol) polarization free energy of solvation -30.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds