Wall clock time and date at job start Wed Apr 1 2020 00:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00281 * 2 1 4 4 H 1.48496 * 109.47119 * 266.75065 * 3 2 1 5 5 H 1.48509 * 109.46916 * 26.74563 * 3 2 1 6 6 H 1.48495 * 109.47543 * 146.74807 * 3 2 1 7 7 C 1.38814 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00186 * 345.24441 * 7 2 1 9 9 N 1.36933 * 119.99870 * 165.23625 * 7 2 1 10 10 C 1.47751 * 125.82739 * 325.56740 * 9 7 2 11 11 C 1.54908 * 104.84544 * 204.24955 * 10 9 7 12 12 C 1.55157 * 101.57924 * 322.90866 * 11 10 9 13 13 C 1.47021 * 125.64805 * 145.57053 * 9 7 2 14 14 H 1.09006 * 109.88389 * 59.32353 * 13 9 7 15 15 C 1.52998 * 109.88137 * 298.31345 * 13 9 7 16 16 N 1.46503 * 109.47257 * 61.81680 * 15 13 9 17 17 C 1.34780 * 120.00135 * 186.05888 * 16 15 13 18 18 O 1.21595 * 119.99816 * 0.02562 * 17 16 15 19 19 C 1.47517 * 119.99861 * 180.02562 * 17 16 15 20 20 C 1.39792 * 120.06909 * 180.02562 * 19 17 16 21 21 C 1.37605 * 119.93186 * 179.97438 * 20 19 17 22 22 C 1.39222 * 120.07227 * 359.97438 * 21 20 19 23 23 N 1.39044 * 119.93194 * 180.02562 * 22 21 20 24 24 C 1.48225 * 110.99786 * 119.26016 * 23 22 21 25 25 C 1.51116 * 105.43989 * 92.59512 * 24 23 22 26 26 C 1.30963 * 109.46325 * 16.92437 * 25 24 23 27 27 C 1.48365 * 110.97443 * 232.80765 * 23 22 21 28 28 C 1.39222 * 120.13117 * 0.27151 * 22 21 20 29 29 C 1.37611 * 120.07077 * 359.45141 * 28 22 21 30 30 H 0.97000 * 120.00049 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.43007 * 85.36944 * 10 9 7 32 32 H 1.08995 * 110.37975 * 323.10532 * 10 9 7 33 33 H 1.08996 * 111.00629 * 204.83195 * 11 10 9 34 34 H 1.08995 * 111.00296 * 80.97492 * 11 10 9 35 35 H 1.09003 * 110.72147 * 277.13426 * 12 11 10 36 36 H 1.09002 * 110.86999 * 153.93781 * 12 11 10 37 37 H 1.09000 * 109.47099 * 301.81889 * 15 13 9 38 38 H 1.09005 * 109.47369 * 181.81702 * 15 13 9 39 39 H 0.96998 * 119.99640 * 6.06345 * 16 15 13 40 40 H 1.07999 * 120.03329 * 359.97438 * 20 19 17 41 41 H 1.08003 * 119.96634 * 180.02562 * 21 20 19 42 42 H 1.08995 * 110.27252 * 333.57323 * 24 23 22 43 43 H 1.09006 * 110.26231 * 211.60696 * 24 23 22 44 44 H 1.08000 * 125.27388 * 196.92560 * 25 24 23 45 45 H 1.07998 * 125.27678 * 179.97438 * 26 25 24 46 46 H 1.09002 * 110.18615 * 148.42861 * 27 23 22 47 47 H 1.08995 * 110.37597 * 26.44129 * 27 23 22 48 48 H 1.08001 * 119.95733 * 179.70387 * 28 22 21 49 49 H 1.07995 * 120.03075 * 180.28997 * 29 28 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5665 2.0067 -1.3978 5 1 1.4149 2.6716 0.6301 6 1 3.5117 1.4610 0.7676 7 6 2.0102 -1.2022 0.0005 8 1 1.4970 -2.1220 0.2392 9 7 3.3457 -1.2218 -0.3017 10 6 4.0255 -0.3410 -1.2738 11 6 5.2898 -1.1259 -1.7040 12 6 5.7023 -1.8062 -0.3720 13 6 4.3445 -2.1250 0.2884 14 1 4.0702 -3.1612 0.0903 15 6 4.4318 -1.8895 1.7976 16 7 3.1373 -2.1898 2.4144 17 6 2.9399 -1.9372 3.7236 18 8 3.8360 -1.4597 4.3925 19 6 1.6366 -2.2401 4.3448 20 6 1.4300 -1.9783 5.7023 21 6 0.2130 -2.2615 6.2787 22 6 -0.8122 -2.8077 5.5113 23 7 -2.0409 -3.0922 6.0967 24 6 -3.1281 -2.3171 5.4530 25 6 -3.6716 -3.2137 4.3648 26 6 -3.2836 -4.4458 4.5803 27 6 -2.4417 -4.4964 5.8343 28 6 -0.6078 -3.0744 4.1603 29 6 0.6051 -2.7881 3.5767 30 1 -0.4850 0.8400 -0.0004 31 1 4.3058 0.6010 -0.8025 32 1 3.3820 -0.1572 -2.1341 33 1 6.0690 -0.4494 -2.0550 34 1 5.0485 -1.8691 -2.4639 35 1 6.2812 -1.1213 0.2477 36 1 6.2637 -2.7212 -0.5609 37 1 4.6924 -0.8484 1.9884 38 1 5.1965 -2.5393 2.2232 39 1 2.4224 -2.5704 1.8807 40 1 2.2247 -1.5542 6.2981 41 1 0.0526 -2.0590 7.3274 42 1 -2.7321 -1.3976 5.0220 43 1 -3.9088 -2.0878 6.1784 44 1 -4.2851 -2.8888 3.5375 45 1 -3.5278 -5.2944 3.9585 46 1 -3.0287 -4.8820 6.6679 47 1 -1.5614 -5.1186 5.6733 48 1 -1.4035 -3.5026 3.5687 49 1 0.7613 -2.9909 2.5275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028134838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:57 Heat of formation + Delta-G solvation = 42.512261 kcal Electronic energy + Delta-G solvation = -30191.450318 eV Core-core repulsion = 26312.214538 eV Total energy + Delta-G solvation = -3879.235780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89390 -40.86711 -39.52714 -38.41046 -35.56630 -34.65894 -33.57517 -32.03337 -31.79759 -31.14789 -29.77432 -29.39922 -26.69025 -25.84395 -24.63408 -23.62702 -22.77640 -22.12551 -21.34945 -20.87923 -20.25604 -19.35071 -18.59133 -17.93563 -17.44368 -17.20483 -16.99523 -16.50902 -16.02385 -15.88592 -15.63063 -15.26607 -15.14300 -15.11245 -14.89373 -14.45307 -14.29345 -14.15248 -14.05376 -13.42231 -13.30432 -13.21500 -13.19912 -13.16519 -13.02635 -12.76809 -12.69562 -12.34270 -12.28900 -12.27217 -12.05848 -11.85555 -11.70727 -11.32337 -10.99437 -10.78659 -10.12161 -10.05118 -10.04579 -9.86060 -9.64368 -8.84641 -8.21105 -5.56991 -0.29287 0.35578 1.18043 1.22260 1.33249 1.39929 1.78710 2.30736 2.37967 2.75890 2.80851 3.11898 3.27914 3.76811 3.78640 3.83831 3.84929 3.88307 3.91572 4.01316 4.15834 4.22867 4.31780 4.32681 4.45433 4.49606 4.50788 4.57724 4.64607 4.69341 4.74011 4.79283 4.81060 4.87507 4.96757 5.02043 5.04021 5.13067 5.15889 5.27415 5.31961 5.35263 5.38423 5.44149 5.48054 5.55456 5.67173 5.81283 5.82303 6.11045 6.24716 6.61192 6.77596 7.22857 7.52705 8.18291 8.97405 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.003471 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.402577 B = 8065.001800 C = 8941.754026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.927 3.073 4 H -0.275 1.275 5 H -0.318 1.318 6 H -0.280 1.280 7 C -0.216 4.216 8 H 0.068 0.932 9 N -0.619 5.619 10 C 0.100 3.900 11 C -0.116 4.116 12 C -0.114 4.114 13 C 0.139 3.861 14 H 0.061 0.939 15 C 0.116 3.884 16 N -0.695 5.695 17 C 0.547 3.453 18 O -0.592 6.592 19 C -0.152 4.152 20 C -0.062 4.062 21 C -0.102 4.102 22 C 0.100 3.900 23 N -0.475 5.475 24 C 0.055 3.945 25 C -0.196 4.196 26 C -0.187 4.187 27 C 0.056 3.944 28 C -0.154 4.154 29 C -0.070 4.070 30 H 0.259 0.741 31 H 0.008 0.992 32 H 0.039 0.961 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.409 0.591 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.143 0.857 45 H 0.154 0.846 46 H 0.116 0.884 47 H 0.079 0.921 48 H 0.138 0.862 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.966 -10.335 7.282 12.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.206 4.206 3 Si 0.759 3.241 4 H -0.201 1.201 5 H -0.247 1.247 6 H -0.206 1.206 7 C -0.345 4.345 8 H 0.086 0.914 9 N -0.345 5.345 10 C -0.024 4.024 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.033 3.967 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.346 5.346 17 C 0.335 3.665 18 O -0.475 6.475 19 C -0.155 4.155 20 C -0.081 4.081 21 C -0.121 4.121 22 C 0.005 3.995 23 N -0.195 5.195 24 C -0.071 4.071 25 C -0.215 4.215 26 C -0.206 4.206 27 C -0.070 4.070 28 C -0.174 4.174 29 C -0.089 4.089 30 H 0.068 0.932 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.249 0.751 40 H 0.156 0.844 41 H 0.175 0.825 42 H 0.082 0.918 43 H 0.133 0.867 44 H 0.161 0.839 45 H 0.171 0.829 46 H 0.134 0.866 47 H 0.097 0.903 48 H 0.156 0.844 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.481 -9.792 8.313 12.854 hybrid contribution -0.436 1.243 -1.333 1.875 sum -0.916 -8.549 6.980 11.074 Atomic orbital electron populations 1.69831 1.06527 1.26682 1.55448 1.25726 0.95504 0.99601 0.99727 0.86159 0.77937 0.82185 0.77828 1.20112 1.24669 1.20644 1.18282 0.82339 0.92448 1.41402 0.91430 1.45057 1.03799 1.41443 1.44203 1.22121 0.94859 0.93485 0.91973 1.22662 0.95804 0.99545 0.97410 1.22555 0.94448 1.02269 0.95991 1.21606 0.90798 0.94941 0.89343 0.92125 1.21953 0.84510 0.99327 0.95144 1.46015 1.16891 1.62741 1.08922 1.18577 0.87701 0.77738 0.82443 1.90663 1.45703 1.47444 1.63727 1.20044 0.93971 1.05609 0.95879 1.21260 0.97848 0.96193 0.92850 1.21080 0.90792 0.98993 1.01191 1.19310 0.92291 0.96999 0.90875 1.63076 0.99372 1.05999 1.51014 1.22297 0.93328 0.96497 0.94943 1.24146 1.01725 0.96084 0.99565 1.24192 0.99762 0.98541 0.98137 1.22383 0.99187 0.88687 0.96748 1.21918 0.97506 1.02173 0.95781 1.21274 0.92856 0.95562 0.99224 0.93200 0.97420 0.94244 0.88973 0.89924 0.91018 0.87487 0.94800 0.90537 0.75149 0.84439 0.82542 0.91805 0.86677 0.83904 0.82862 0.86578 0.90283 0.84449 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.80 13.97 21.65 0.30 -55.50 16 2 C -0.01 -0.48 5.47 84.86 0.46 -0.02 16 3 Si 0.93 47.80 24.60 68.60 1.69 49.49 16 4 H -0.27 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.32 -16.98 7.11 99.48 0.71 -16.28 16 6 H -0.28 -14.66 6.68 99.48 0.66 -13.99 16 7 C -0.22 -11.10 8.50 84.03 0.71 -10.39 16 8 H 0.07 3.64 7.12 -2.91 -0.02 3.62 16 9 N -0.62 -27.06 2.73 -667.45 -1.82 -28.88 16 10 C 0.10 3.99 4.95 86.79 0.43 4.42 16 11 C -0.12 -3.22 7.09 31.99 0.23 -2.99 16 12 C -0.11 -3.01 6.48 31.78 0.21 -2.80 16 13 C 0.14 4.83 3.33 45.34 0.15 4.98 16 14 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 15 C 0.12 4.35 5.18 86.38 0.45 4.80 16 16 N -0.70 -27.98 4.76 -466.27 -2.22 -30.19 16 17 C 0.55 23.01 7.76 86.69 0.67 23.68 16 18 O -0.59 -27.57 16.32 -4.01 -0.07 -27.64 16 19 C -0.15 -5.65 5.88 -20.08 -0.12 -5.77 16 20 C -0.06 -2.01 9.58 22.50 0.22 -1.79 16 21 C -0.10 -2.80 9.95 22.36 0.22 -2.58 16 22 C 0.10 2.75 4.53 38.47 0.17 2.92 16 23 N -0.48 -10.84 5.59 -695.08 -3.89 -14.73 16 24 C 0.06 1.19 6.44 85.43 0.55 1.74 16 25 C -0.20 -3.92 9.74 25.82 0.25 -3.67 16 26 C -0.19 -3.35 9.38 25.82 0.24 -3.10 16 27 C 0.06 1.03 6.35 85.41 0.54 1.57 16 28 C -0.15 -4.69 8.47 22.36 0.19 -4.50 16 29 C -0.07 -2.44 9.53 22.50 0.21 -2.23 16 30 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.01 0.35 5.21 -2.39 -0.01 0.34 16 32 H 0.04 1.68 7.92 -2.39 -0.02 1.66 16 33 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 1.86 7.85 -2.39 -0.02 1.84 16 36 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.46 8.12 -2.39 -0.02 1.45 16 38 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.41 16.47 4.21 -92.71 -0.39 16.08 16 40 H 0.14 4.34 7.64 -2.91 -0.02 4.31 16 41 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 42 H 0.06 1.63 7.78 -2.39 -0.02 1.61 16 43 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 44 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 45 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.08 1.49 7.66 -2.39 -0.02 1.47 16 48 H 0.14 3.93 5.34 -2.91 -0.02 3.91 16 49 H 0.12 4.42 6.39 -2.91 -0.02 4.40 16 Total: -1.00 -68.91 382.16 0.32 -68.59 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.53 Total: 34.58 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: 5.80 Total: 4.28 kcal Atomic # 7 Polarization: -121.67 SS G_CDS: -7.62 Total: -129.30 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 1.69 Total: 49.49 kcal Total: -68.91 0.32 -68.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028134838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.098 kcal (2) G-P(sol) polarization free energy of solvation -68.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds